Wall clock time and date at job start Tue Mar 31 2020 07:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46807 * 2 1 4 4 H 1.09000 * 109.47251 * 307.79691 * 3 2 1 5 5 C 1.50707 * 109.46653 * 187.80086 * 3 2 1 6 6 O 1.21291 * 120.00344 * 253.89426 * 5 3 2 7 7 N 1.34773 * 119.99874 * 73.90128 * 5 3 2 8 8 C 1.37099 * 120.00341 * 4.87485 * 7 5 3 9 9 H 1.08002 * 119.99659 * 28.68028 * 8 7 5 10 10 C 1.38943 * 120.00510 * 208.68605 * 8 7 5 11 11 N 1.31411 * 119.99762 * 347.05642 * 10 8 7 12 12 Si 1.86801 * 120.00387 * 167.05908 * 10 8 7 13 13 H 1.48500 * 109.47025 * 94.98369 * 12 10 8 14 14 H 1.48505 * 109.47307 * 214.98242 * 12 10 8 15 15 H 1.48504 * 109.47071 * 334.98400 * 12 10 8 16 16 C 1.46500 * 120.00437 * 184.87592 * 7 5 3 17 17 C 1.53006 * 109.47127 * 83.82178 * 16 7 5 18 18 C 1.50693 * 109.47297 * 67.80365 * 3 2 1 19 19 C 1.38267 * 119.94470 * 59.72762 * 18 3 2 20 20 C 1.38154 * 120.05476 * 179.72597 * 19 18 3 21 21 C 1.38725 * 119.94239 * 0.54586 * 20 19 18 22 22 O 1.35903 * 120.05712 * 179.74651 * 21 20 19 23 23 C 1.42901 * 116.99627 * 359.97438 * 22 21 20 24 24 C 1.38734 * 119.89151 * 359.72413 * 21 20 19 25 25 C 1.38144 * 119.94332 * 0.02562 * 24 21 20 26 26 H 1.09004 * 109.47447 * 300.00173 * 1 2 3 27 27 H 1.08994 * 109.47087 * 60.00007 * 1 2 3 28 28 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47313 * 239.99828 * 2 1 3 30 30 H 1.09002 * 109.47080 * 119.99350 * 2 1 3 31 31 H 0.97006 * 119.99857 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.47534 * 203.83026 * 16 7 5 33 33 H 1.09003 * 109.46818 * 323.82859 * 16 7 5 34 34 H 1.08995 * 109.46869 * 300.00731 * 17 16 7 35 35 H 1.08999 * 109.46590 * 60.00137 * 17 16 7 36 36 H 1.09001 * 109.46775 * 180.02562 * 17 16 7 37 37 H 1.07996 * 119.97435 * 359.97438 * 19 18 3 38 38 H 1.08001 * 120.02688 * 180.26956 * 20 19 18 39 39 H 1.09003 * 109.46980 * 299.99170 * 23 22 21 40 40 H 1.08996 * 109.47430 * 59.99302 * 23 22 21 41 41 H 1.09007 * 109.46875 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.02976 * 179.97438 * 24 21 20 43 43 H 1.08003 * 119.97680 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5672 1.9951 -0.8120 5 6 3.5346 1.4469 -0.1929 6 8 4.2661 1.6941 0.7425 7 7 4.0584 1.1763 -1.4048 8 6 3.2323 0.9956 -2.4839 9 1 2.2737 1.4918 -2.5191 10 6 3.6283 0.1742 -3.5322 11 7 4.8775 -0.2243 -3.6190 12 14 2.3849 -0.3638 -4.8184 13 1 2.4479 0.5558 -5.9828 14 1 2.6979 -1.7461 -5.2618 15 1 1.0206 -0.3286 -4.2331 16 6 5.5107 1.0750 -1.5692 17 6 5.9699 -0.3344 -1.1900 18 6 1.7013 2.0951 1.3154 19 6 2.1880 1.5631 2.4953 20 6 1.8836 2.1628 3.7021 21 6 1.0797 3.2930 3.7304 22 8 0.7746 3.8817 4.9167 23 6 1.3157 3.2831 6.0961 24 6 0.5880 3.8215 2.5457 25 6 0.8995 3.2212 1.3411 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.1541 -0.7975 -4.3511 32 1 5.7737 1.2759 -2.6076 33 1 6.0010 1.8030 -0.9228 34 1 5.7068 -0.5351 -0.1515 35 1 5.4794 -1.0623 -1.8363 36 1 7.0504 -0.4095 -1.3119 37 1 2.8099 0.6805 2.4731 38 1 2.2676 1.7494 4.6230 39 1 0.9593 2.2563 6.1786 40 1 2.4041 3.2864 6.0387 41 1 0.9964 3.8502 6.9706 42 1 -0.0384 4.7011 2.5652 43 1 0.5173 3.6325 0.4185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271735346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:34 Heat of formation + Delta-G solvation = -45.365724 kcal Electronic energy + Delta-G solvation = -24120.155178 eV Core-core repulsion = 20745.032012 eV Total energy + Delta-G solvation = -3375.123166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03011 -38.89794 -37.17300 -34.95653 -34.05522 -31.49064 -30.70808 -29.88253 -29.70160 -27.52420 -25.99685 -24.69790 -22.65220 -22.12989 -21.60061 -20.18815 -18.99395 -17.92226 -16.85844 -16.43838 -15.64413 -15.58237 -15.02083 -14.35546 -14.26233 -14.04989 -13.93699 -13.47321 -13.37361 -13.15321 -12.82746 -12.44855 -12.31233 -11.96204 -11.87415 -11.63505 -11.59437 -11.25363 -11.16123 -10.96216 -10.81484 -10.77355 -10.62831 -10.46800 -10.25375 -10.13336 -10.05309 -9.74838 -8.76661 -8.63689 -8.25543 -7.69025 -7.59130 -6.32666 -3.99392 1.73374 1.83786 3.08813 3.19597 3.21557 3.42384 3.92088 4.05146 4.16820 4.84178 5.01486 5.02980 5.15030 5.17110 5.27515 5.34816 5.44067 5.61773 5.70171 5.73920 5.80405 5.90457 5.99198 6.16950 6.29226 6.36651 6.46736 6.48882 6.58458 6.66797 6.71920 6.73271 6.81295 6.90967 6.95878 7.06830 7.12786 7.20463 7.35348 7.53587 7.64231 7.79192 7.91283 8.46950 9.07632 9.57035 9.97322 10.62386 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.004608 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.953570 B = 6074.399019 C = 6738.050350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.048 4.048 4 H 0.090 0.910 5 C 0.468 3.532 6 O -0.601 6.601 7 N -0.443 5.443 8 C -0.331 4.331 9 H 0.093 0.907 10 C 0.041 3.959 11 N -0.862 5.862 12 Si 0.913 3.087 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.135 3.865 17 C -0.140 4.140 18 C -0.082 4.082 19 C -0.037 4.037 20 C -0.211 4.211 21 C 0.110 3.890 22 O -0.324 6.324 23 C 0.030 3.970 24 C -0.158 4.158 25 C -0.081 4.081 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.029 0.971 34 H 0.021 0.979 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 1.723 9.084 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.069 4.069 4 H 0.108 0.892 5 C 0.256 3.744 6 O -0.487 6.487 7 N -0.161 5.161 8 C -0.458 4.458 9 H 0.111 0.889 10 C -0.163 4.163 11 N -0.500 5.500 12 Si 0.739 3.261 13 H -0.205 1.205 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.012 3.988 17 C -0.198 4.198 18 C -0.082 4.082 19 C -0.055 4.055 20 C -0.230 4.230 21 C 0.066 3.934 22 O -0.238 6.238 23 C -0.066 4.066 24 C -0.177 4.177 25 C -0.099 4.099 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.132 1.887 9.406 11.954 hybrid contribution -0.278 -0.506 -0.703 0.910 sum -7.410 1.381 8.703 11.514 Atomic orbital electron populations 1.21754 0.96208 1.00905 1.01458 1.21389 0.95119 0.94750 1.03092 1.20037 0.95307 0.97353 0.94217 0.89195 1.20017 0.89305 0.82212 0.82855 1.90528 1.61761 1.55343 1.41101 1.43690 1.05792 1.60613 1.06028 1.19534 1.01189 1.27267 0.97852 0.88905 1.25350 0.96361 0.95819 0.98803 1.70080 1.14634 1.33989 1.31322 0.86138 0.81044 0.78348 0.80566 1.20538 1.20743 1.19184 1.21204 0.80586 0.95196 1.01792 1.22061 0.98609 1.00163 0.98926 1.19550 0.97910 0.95962 0.94816 1.20768 0.95066 0.98891 0.90782 1.21150 1.04169 0.98508 0.99182 1.18953 0.96206 0.92868 0.85363 1.86010 1.71021 1.53659 1.13098 1.22971 0.98931 0.98793 0.85880 1.20233 1.05115 1.02413 0.89900 1.20843 0.97325 0.94822 0.96884 0.93136 0.92766 0.93270 0.89536 0.92604 0.92256 0.88146 0.95229 0.95995 0.89782 0.95006 0.85799 0.86143 0.92905 0.92790 0.88758 0.85870 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.75 37.16 0.36 -1.81 16 2 C -0.11 -1.90 5.20 -26.73 -0.14 -2.03 16 3 C -0.05 -0.94 1.61 -92.92 -0.15 -1.09 16 4 H 0.09 1.72 6.47 -51.93 -0.34 1.38 16 5 C 0.47 11.13 6.75 -10.98 -0.07 11.05 16 6 O -0.60 -15.66 14.36 5.55 0.08 -15.58 16 7 N -0.44 -10.94 2.64 -114.81 -0.30 -11.24 16 8 C -0.33 -7.97 7.67 -14.93 -0.11 -8.08 16 9 H 0.09 2.13 6.39 -52.49 -0.34 1.80 16 10 C 0.04 0.98 5.43 -17.47 -0.09 0.88 16 11 N -0.86 -21.20 7.85 55.50 0.44 -20.77 16 12 Si 0.91 18.63 29.57 -169.99 -5.03 13.61 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 16 C 0.13 3.32 5.27 -4.04 -0.02 3.30 16 17 C -0.14 -3.25 9.63 37.16 0.36 -2.89 16 18 C -0.08 -1.49 3.66 -104.60 -0.38 -1.88 16 19 C -0.04 -0.67 7.74 -39.60 -0.31 -0.97 16 20 C -0.21 -3.38 9.04 -39.43 -0.36 -3.73 16 21 C 0.11 1.74 6.69 -39.22 -0.26 1.48 16 22 O -0.32 -4.58 10.50 -19.44 -0.20 -4.78 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.16 -2.45 9.99 -39.43 -0.39 -2.84 16 25 C -0.08 -1.31 9.66 -39.60 -0.38 -1.70 16 26 H 0.05 0.73 7.48 -51.93 -0.39 0.34 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.72 6.92 -51.93 -0.36 1.36 16 30 H 0.06 0.99 7.12 -51.93 -0.37 0.62 16 31 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.10 2.57 6.16 -51.93 -0.32 2.25 16 33 H 0.03 0.74 7.55 -51.93 -0.39 0.35 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 2.07 6.04 -51.93 -0.31 1.76 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.12 2.34 7.13 -52.49 -0.37 1.97 16 38 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 39 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.12 1.78 7.94 -52.48 -0.42 1.36 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -28.05 342.07 -7.23 -35.28 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.40 Total: 7.35 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.97 Total: -9.03 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.13 Total: -32.01 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.12 Total: -20.36 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.05 -7.23 -35.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271735346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.085 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds