Wall clock time and date at job start Tue Mar 31 2020 07:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46807 * 2 1 4 4 H 1.09000 * 109.47251 * 307.79691 * 3 2 1 5 5 C 1.50707 * 109.46653 * 187.80086 * 3 2 1 6 6 O 1.21291 * 120.00344 * 253.89426 * 5 3 2 7 7 N 1.34773 * 119.99874 * 73.90128 * 5 3 2 8 8 C 1.37099 * 120.00341 * 4.87485 * 7 5 3 9 9 H 1.08002 * 119.99659 * 28.68028 * 8 7 5 10 10 C 1.38943 * 120.00510 * 208.68605 * 8 7 5 11 11 N 1.31411 * 119.99762 * 347.05642 * 10 8 7 12 12 Si 1.86801 * 120.00387 * 167.05908 * 10 8 7 13 13 H 1.48500 * 109.47025 * 94.98369 * 12 10 8 14 14 H 1.48505 * 109.47307 * 214.98242 * 12 10 8 15 15 H 1.48504 * 109.47071 * 334.98400 * 12 10 8 16 16 C 1.46500 * 120.00437 * 184.87592 * 7 5 3 17 17 C 1.53006 * 109.47127 * 83.82178 * 16 7 5 18 18 C 1.50693 * 109.47297 * 67.80365 * 3 2 1 19 19 C 1.38267 * 119.94470 * 59.72762 * 18 3 2 20 20 C 1.38154 * 120.05476 * 179.72597 * 19 18 3 21 21 C 1.38725 * 119.94239 * 0.54586 * 20 19 18 22 22 O 1.35903 * 120.05712 * 179.74651 * 21 20 19 23 23 C 1.42901 * 116.99627 * 359.97438 * 22 21 20 24 24 C 1.38734 * 119.89151 * 359.72413 * 21 20 19 25 25 C 1.38144 * 119.94332 * 0.02562 * 24 21 20 26 26 H 1.09004 * 109.47447 * 300.00173 * 1 2 3 27 27 H 1.08994 * 109.47087 * 60.00007 * 1 2 3 28 28 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47313 * 239.99828 * 2 1 3 30 30 H 1.09002 * 109.47080 * 119.99350 * 2 1 3 31 31 H 0.97006 * 119.99857 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.47534 * 203.83026 * 16 7 5 33 33 H 1.09003 * 109.46818 * 323.82859 * 16 7 5 34 34 H 1.08995 * 109.46869 * 300.00731 * 17 16 7 35 35 H 1.08999 * 109.46590 * 60.00137 * 17 16 7 36 36 H 1.09001 * 109.46775 * 180.02562 * 17 16 7 37 37 H 1.07996 * 119.97435 * 359.97438 * 19 18 3 38 38 H 1.08001 * 120.02688 * 180.26956 * 20 19 18 39 39 H 1.09003 * 109.46980 * 299.99170 * 23 22 21 40 40 H 1.08996 * 109.47430 * 59.99302 * 23 22 21 41 41 H 1.09007 * 109.46875 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.02976 * 179.97438 * 24 21 20 43 43 H 1.08003 * 119.97680 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5672 1.9951 -0.8120 5 6 3.5346 1.4469 -0.1929 6 8 4.2661 1.6941 0.7425 7 7 4.0584 1.1763 -1.4048 8 6 3.2323 0.9956 -2.4839 9 1 2.2737 1.4918 -2.5191 10 6 3.6283 0.1742 -3.5322 11 7 4.8775 -0.2243 -3.6190 12 14 2.3849 -0.3638 -4.8184 13 1 2.4479 0.5558 -5.9828 14 1 2.6979 -1.7461 -5.2618 15 1 1.0206 -0.3286 -4.2331 16 6 5.5107 1.0750 -1.5692 17 6 5.9699 -0.3344 -1.1900 18 6 1.7013 2.0951 1.3154 19 6 2.1880 1.5631 2.4953 20 6 1.8836 2.1628 3.7021 21 6 1.0797 3.2930 3.7304 22 8 0.7746 3.8817 4.9167 23 6 1.3157 3.2831 6.0961 24 6 0.5880 3.8215 2.5457 25 6 0.8995 3.2212 1.3411 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.1541 -0.7975 -4.3511 32 1 5.7737 1.2759 -2.6076 33 1 6.0010 1.8030 -0.9228 34 1 5.7068 -0.5351 -0.1515 35 1 5.4794 -1.0623 -1.8363 36 1 7.0504 -0.4095 -1.3119 37 1 2.8099 0.6805 2.4731 38 1 2.2676 1.7494 4.6230 39 1 0.9593 2.2563 6.1786 40 1 2.4041 3.2864 6.0387 41 1 0.9964 3.8502 6.9706 42 1 -0.0384 4.7011 2.5652 43 1 0.5173 3.6325 0.4185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271735346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:34 Heat of formation + Delta-G solvation = -59.100126 kcal Electronic energy + Delta-G solvation = -24120.750747 eV Core-core repulsion = 20745.032012 eV Total energy + Delta-G solvation = -3375.718734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37110 -40.44335 -38.53018 -36.81640 -35.49705 -33.36862 -31.96352 -31.65359 -31.04019 -28.58353 -27.33165 -26.54493 -23.97487 -23.88226 -22.85298 -21.73576 -20.77583 -19.07858 -18.58524 -18.06750 -16.97427 -16.59200 -16.52419 -16.01299 -15.90490 -15.52028 -15.42247 -15.00330 -14.76385 -14.47897 -14.30324 -14.09340 -13.62817 -13.41587 -13.31982 -13.19200 -12.91751 -12.79695 -12.72711 -12.55341 -12.39406 -12.21810 -12.03036 -11.97502 -11.80179 -11.69953 -11.48398 -11.45695 -10.65325 -10.19135 -9.80861 -9.52068 -8.95053 -8.16516 -5.89040 0.47905 0.54915 1.46681 1.53145 1.63137 2.11151 2.34835 2.42773 2.80742 3.12475 3.22604 3.89461 3.91758 4.01848 4.19153 4.32791 4.38885 4.40296 4.40810 4.52024 4.59653 4.61283 4.70778 4.75762 4.80721 4.84473 4.90260 4.96722 5.06433 5.14031 5.18780 5.22538 5.29273 5.41564 5.45569 5.47162 5.54631 5.59310 5.83378 5.86228 5.87908 6.02645 6.50342 6.57476 7.20802 7.69432 8.10255 8.79511 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.004608 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.953570 B = 6074.399019 C = 6738.050350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.037 4.037 4 H 0.094 0.906 5 C 0.456 3.544 6 O -0.631 6.631 7 N -0.454 5.454 8 C -0.345 4.345 9 H 0.103 0.897 10 C 0.003 3.997 11 N -0.884 5.884 12 Si 0.978 3.022 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.255 1.255 16 C 0.136 3.864 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.054 4.054 20 C -0.214 4.214 21 C 0.111 3.889 22 O -0.332 6.332 23 C 0.019 3.981 24 C -0.160 4.160 25 C -0.081 4.081 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.017 0.983 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.123 0.877 42 H 0.147 0.853 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 2.143 9.534 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.058 4.058 4 H 0.112 0.888 5 C 0.246 3.754 6 O -0.520 6.520 7 N -0.172 5.172 8 C -0.473 4.473 9 H 0.120 0.880 10 C -0.199 4.199 11 N -0.523 5.523 12 Si 0.802 3.198 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.179 1.179 16 C 0.013 3.987 17 C -0.182 4.182 18 C -0.103 4.103 19 C -0.072 4.072 20 C -0.233 4.233 21 C 0.066 3.934 22 O -0.246 6.246 23 C -0.075 4.075 24 C -0.178 4.178 25 C -0.099 4.099 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.165 0.835 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.257 2.311 9.866 13.725 hybrid contribution 0.452 -0.588 -0.736 1.045 sum -8.805 1.723 9.130 12.801 Atomic orbital electron populations 1.21673 0.93407 1.02185 1.02077 1.21321 0.97453 0.93412 1.01607 1.19940 0.91937 0.98566 0.95336 0.88805 1.20799 0.91254 0.81242 0.82089 1.90491 1.63061 1.56499 1.41912 1.43918 1.05748 1.60765 1.06812 1.19815 1.01473 1.28013 0.97956 0.87975 1.26093 0.97849 0.95468 1.00492 1.70169 1.15992 1.34158 1.31967 0.85142 0.79361 0.77362 0.77962 1.20440 1.21121 1.17866 1.21118 0.81367 0.95517 1.00665 1.21888 0.99629 0.98997 0.97640 1.19521 0.99576 0.97241 0.93986 1.20708 0.95707 0.98937 0.91880 1.21313 1.04123 0.98640 0.99183 1.19107 0.95480 0.92444 0.86363 1.86010 1.71157 1.53975 1.13443 1.23302 0.99127 0.99922 0.85172 1.20538 1.04897 1.02856 0.89510 1.21044 0.96712 0.93967 0.98199 0.92499 0.92074 0.91681 0.91765 0.93271 0.92180 0.89238 0.96448 0.97142 0.90959 0.93144 0.87760 0.84198 0.91883 0.92668 0.85841 0.83546 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.75 71.98 0.70 -3.11 16 2 C -0.10 -3.58 5.20 30.60 0.16 -3.42 16 3 C -0.04 -1.44 1.61 -12.28 -0.02 -1.46 16 4 H 0.09 3.54 6.47 -2.39 -0.02 3.52 16 5 C 0.46 22.24 6.75 87.66 0.59 22.83 16 6 O -0.63 -33.99 14.36 -3.06 -0.04 -34.04 16 7 N -0.45 -22.95 2.64 -635.53 -1.68 -24.62 16 8 C -0.35 -16.71 7.67 84.04 0.64 -16.06 16 9 H 0.10 4.64 6.39 -2.91 -0.02 4.62 16 10 C 0.00 0.15 5.43 84.92 0.46 0.61 16 11 N -0.88 -43.81 7.85 21.66 0.17 -43.64 16 12 Si 0.98 37.60 29.57 68.60 2.03 39.63 16 13 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.29 -11.09 7.11 99.48 0.71 -10.39 16 15 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 16 C 0.14 6.92 5.27 86.38 0.46 7.38 16 17 C -0.12 -5.88 9.63 71.98 0.69 -5.19 16 18 C -0.10 -3.71 3.66 -19.85 -0.07 -3.79 16 19 C -0.05 -1.96 7.74 22.26 0.17 -1.79 16 20 C -0.21 -6.63 9.04 22.37 0.20 -6.43 16 21 C 0.11 3.29 6.69 22.50 0.15 3.44 16 22 O -0.33 -8.54 10.50 -92.46 -0.97 -9.52 16 23 C 0.02 0.33 9.81 113.37 1.11 1.44 16 24 C -0.16 -4.59 9.99 22.37 0.22 -4.37 16 25 C -0.08 -2.52 9.66 22.25 0.22 -2.30 16 26 H 0.06 1.52 7.48 -2.39 -0.02 1.51 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.57 6.92 -2.39 -0.02 2.55 16 30 H 0.05 1.78 7.12 -2.39 -0.02 1.77 16 31 H 0.27 12.64 8.31 -92.70 -0.77 11.87 16 32 H 0.09 4.72 6.16 -2.39 -0.01 4.70 16 33 H 0.02 0.90 7.55 -2.39 -0.02 0.88 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 3.63 6.04 -2.39 -0.01 3.61 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.10 4.12 7.13 -2.91 -0.02 4.09 16 38 H 0.14 3.62 6.30 -2.91 -0.02 3.60 16 39 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 40 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 41 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 43 H 0.14 3.79 7.94 -2.91 -0.02 3.76 16 Total: -1.00 -60.46 342.07 6.20 -54.26 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 1.00 Total: 30.15 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.69 Total: -12.22 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -1.51 Total: -68.26 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.01 Total: -43.55 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -60.46 6.20 -54.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271735346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.842 kcal (2) G-P(sol) polarization free energy of solvation -60.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds