Wall clock time and date at job start Tue Mar 31 2020 07:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.09002 * 109.46752 * 55.00097 * 3 2 1 5 5 C 1.52998 * 109.47085 * 295.00297 * 3 2 1 6 6 C 1.52995 * 109.47029 * 175.00151 * 3 2 1 7 7 H 1.08994 * 109.47576 * 60.00026 * 6 3 2 8 8 C 1.53007 * 109.47218 * 299.99840 * 6 3 2 9 9 C 1.50702 * 109.47286 * 180.02562 * 6 3 2 10 10 O 1.21288 * 119.99848 * 359.97438 * 9 6 3 11 11 N 1.34777 * 120.00158 * 180.02562 * 9 6 3 12 12 C 1.39924 * 119.99817 * 184.24939 * 11 9 6 13 13 C 1.38967 * 120.03911 * 324.64541 * 12 11 9 14 14 C 1.38150 * 120.06707 * 179.74605 * 13 12 11 15 15 C 1.38165 * 120.14089 * 0.54671 * 14 13 12 16 16 C 1.38912 * 120.06916 * 359.70670 * 15 14 13 17 17 O 1.35755 * 120.03291 * 179.97438 * 16 15 14 18 18 C 1.34823 * 116.99803 * 185.36267 * 17 16 15 19 19 H 1.08001 * 120.00363 * 354.96523 * 18 17 16 20 20 C 1.38652 * 119.99849 * 174.96584 * 18 17 16 21 21 N 1.31555 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00251 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46906 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47033 * 119.99728 * 22 20 18 25 25 H 1.48497 * 109.47271 * 239.99955 * 22 20 18 26 26 C 1.38714 * 120.03724 * 144.91473 * 12 11 9 27 27 H 1.09007 * 109.46927 * 299.99580 * 1 2 3 28 28 H 1.09001 * 109.47565 * 59.99736 * 1 2 3 29 29 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47068 * 240.00117 * 2 1 3 31 31 H 1.08996 * 109.47327 * 119.99874 * 2 1 3 32 32 H 1.08994 * 109.46816 * 299.99542 * 5 3 2 33 33 H 1.08998 * 109.46911 * 59.99802 * 5 3 2 34 34 H 1.09004 * 109.46472 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.46983 * 179.97438 * 8 6 3 36 36 H 1.08994 * 109.47000 * 300.00539 * 8 6 3 37 37 H 1.08996 * 109.46517 * 60.00474 * 8 6 3 38 38 H 0.96993 * 120.00033 * 4.52198 * 11 9 6 39 39 H 1.08002 * 119.95938 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.93067 * 180.27287 * 14 13 12 41 41 H 1.08002 * 119.96699 * 179.71634 * 15 14 13 42 42 H 0.97004 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.06431 * 359.95706 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.9994 0.9054 -0.7161 8 6 3.9696 0.7603 1.4331 9 6 4.0671 2.8652 0.1263 10 8 3.2827 3.7858 0.0347 11 7 5.3880 3.1129 0.2276 12 6 5.8476 4.4314 0.3178 13 6 5.1992 5.4434 -0.3798 14 6 5.6493 6.7462 -0.2870 15 6 6.7517 7.0457 0.4901 16 6 7.4075 6.0378 1.1857 17 8 8.4909 6.3328 1.9487 18 6 9.1466 5.2957 2.5074 19 1 8.7576 4.2933 2.4066 20 6 10.3206 5.5162 3.2116 21 7 10.7948 6.7372 3.3340 22 14 11.2288 4.0795 3.9864 23 1 10.4941 2.8199 3.7055 24 1 12.5965 3.9921 3.4146 25 1 11.3182 4.2841 5.4545 26 6 6.9544 4.7290 1.0992 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5876 -2.1491 33 1 0.5488 2.1252 -1.3968 34 1 1.9981 3.1544 -1.3070 35 1 5.0560 0.7612 1.5224 36 1 3.5349 1.2993 2.2748 37 1 3.6063 -0.2673 1.4330 38 1 6.0203 2.3774 0.2340 39 1 4.3398 5.2117 -0.9915 40 1 5.1410 7.5317 -0.8266 41 1 7.1040 8.0645 0.5570 42 1 11.6163 6.8914 3.8263 43 1 7.4623 3.9438 1.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272437349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:33 Heat of formation + Delta-G solvation = -55.355374 kcal Electronic energy + Delta-G solvation = -23061.530226 eV Core-core repulsion = 19685.973876 eV Total energy + Delta-G solvation = -3375.556350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51374 -38.85771 -37.21092 -36.10548 -34.31184 -32.39263 -32.12541 -29.54558 -29.14174 -28.45112 -25.37077 -24.66311 -24.36910 -21.90648 -21.77972 -20.21066 -19.67722 -17.97630 -17.72907 -16.75031 -15.73226 -15.33501 -15.24407 -14.94238 -14.62041 -14.40693 -14.19262 -13.90653 -13.61463 -13.41930 -13.21543 -12.97341 -12.68874 -12.32061 -12.07007 -12.02811 -11.83109 -11.70267 -11.56290 -11.34629 -11.15920 -11.03033 -10.81502 -10.77195 -10.71404 -10.58812 -10.44931 -9.69846 -9.51485 -9.25608 -8.81720 -7.72962 -7.16030 -6.45633 -4.05432 1.98480 2.38559 2.84317 3.10482 3.11285 3.16733 3.28721 3.94787 4.44698 4.52158 4.61620 4.67325 4.91705 5.02274 5.08172 5.09822 5.28351 5.29067 5.39695 5.42645 5.53086 5.61962 5.66054 5.72637 5.79092 5.83770 5.87273 6.00306 6.02439 6.04723 6.09448 6.24461 6.28130 6.29178 6.46790 6.66018 6.98609 7.00900 7.13255 7.32038 7.42505 7.72242 7.82450 7.98748 8.35897 8.99855 9.70644 10.72579 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.003561 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.208898 B = 7860.536403 C = 9061.914829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.161 4.161 6 C -0.106 4.106 7 H 0.096 0.904 8 C -0.149 4.149 9 C 0.514 3.486 10 O -0.516 6.516 11 N -0.669 5.669 12 C 0.178 3.822 13 C -0.205 4.205 14 C -0.065 4.065 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.256 4.256 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.405 0.595 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 -13.850 -6.611 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.218 4.218 6 C -0.127 4.127 7 H 0.114 0.886 8 C -0.206 4.206 9 C 0.302 3.698 10 O -0.391 6.391 11 N -0.313 5.313 12 C 0.085 3.915 13 C -0.225 4.225 14 C -0.084 4.084 15 C -0.220 4.220 16 C 0.113 3.887 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.278 4.278 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.240 0.760 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.283 -12.905 -6.483 20.312 hybrid contribution 0.889 -1.187 0.465 1.554 sum -13.395 -14.092 -6.019 20.353 Atomic orbital electron populations 1.21808 0.95826 1.01298 1.02102 1.21671 0.96058 0.96246 1.01999 1.20951 0.92093 0.95980 0.99913 0.90457 1.22114 1.01045 1.02933 0.95676 1.21388 0.97848 0.92944 1.00549 0.88582 1.21871 1.01845 1.00946 0.95951 1.20716 0.81790 0.91570 0.75734 1.90635 1.54908 1.46226 1.47330 1.43533 1.07719 1.07470 1.72627 1.17444 0.94834 0.83254 0.96006 1.20673 1.03902 0.92432 1.05533 1.20555 0.94931 0.95651 0.97275 1.20266 0.99608 0.98585 1.03506 1.19071 0.88230 0.91798 0.89582 1.84007 1.34483 1.34737 1.54829 1.21317 1.05603 0.87290 1.32607 0.89207 1.25275 0.96044 0.98023 0.97165 1.70045 1.21001 1.19698 1.39018 0.85662 0.79264 0.79710 0.78839 1.19212 1.20149 1.20152 1.20826 1.02057 0.97858 1.07035 0.92735 0.92434 0.93002 0.92067 0.91627 0.93621 0.92852 0.89805 0.91970 0.91853 0.91062 0.75977 0.85909 0.86670 0.86423 0.92075 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.94 5.19 -26.73 -0.14 -1.08 16 3 C -0.07 -0.70 1.61 -90.62 -0.15 -0.85 16 4 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 5 C -0.16 -1.71 8.63 37.16 0.32 -1.39 16 6 C -0.11 -1.06 2.32 -91.77 -0.21 -1.28 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -1.30 8.75 37.16 0.33 -0.98 16 9 C 0.51 7.33 6.70 -10.98 -0.07 7.25 16 10 O -0.52 -8.96 11.12 5.55 0.06 -8.90 16 11 N -0.67 -9.98 5.19 -9.88 -0.05 -10.03 16 12 C 0.18 3.39 6.29 -83.72 -0.53 2.87 16 13 C -0.20 -3.94 8.69 -39.34 -0.34 -4.29 16 14 C -0.07 -1.24 10.03 -39.64 -0.40 -1.64 16 15 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 16 C 0.17 4.07 6.65 -39.14 -0.26 3.81 16 17 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 18 C -0.39 -10.84 9.49 30.89 0.29 -10.54 16 19 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 22 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.26 -5.55 9.08 -39.21 -0.36 -5.90 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 6.17 -51.93 -0.32 0.14 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.52 6.56 -51.93 -0.34 0.17 16 34 H 0.08 1.12 5.51 -51.93 -0.29 0.84 16 35 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16 38 H 0.41 4.83 8.39 -40.82 -0.34 4.49 16 39 H 0.12 2.30 6.25 -52.49 -0.33 1.98 16 40 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 2.73 5.63 -52.49 -0.30 2.44 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -31.86 344.84 -6.89 -38.76 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.19 Total: 7.78 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.65 Total: -18.53 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.71 Total: -34.47 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.06 Total: -13.94 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.86 -6.89 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272437349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds