Wall clock time and date at job start Tue Mar 31 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.09002 * 109.46752 * 55.00097 * 3 2 1 5 5 C 1.52998 * 109.47085 * 295.00297 * 3 2 1 6 6 C 1.52995 * 109.47029 * 175.00151 * 3 2 1 7 7 H 1.08994 * 109.47576 * 60.00026 * 6 3 2 8 8 C 1.53007 * 109.47218 * 299.99840 * 6 3 2 9 9 C 1.50702 * 109.47286 * 180.02562 * 6 3 2 10 10 O 1.21288 * 119.99848 * 359.97438 * 9 6 3 11 11 N 1.34777 * 120.00158 * 180.02562 * 9 6 3 12 12 C 1.39924 * 119.99817 * 184.24939 * 11 9 6 13 13 C 1.38967 * 120.03911 * 324.64541 * 12 11 9 14 14 C 1.38150 * 120.06707 * 179.74605 * 13 12 11 15 15 C 1.38165 * 120.14089 * 0.54671 * 14 13 12 16 16 C 1.38912 * 120.06916 * 359.70670 * 15 14 13 17 17 O 1.35755 * 120.03291 * 179.97438 * 16 15 14 18 18 C 1.34823 * 116.99803 * 185.36267 * 17 16 15 19 19 H 1.08001 * 120.00363 * 354.96523 * 18 17 16 20 20 C 1.38652 * 119.99849 * 174.96584 * 18 17 16 21 21 N 1.31555 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00251 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46906 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47033 * 119.99728 * 22 20 18 25 25 H 1.48497 * 109.47271 * 239.99955 * 22 20 18 26 26 C 1.38714 * 120.03724 * 144.91473 * 12 11 9 27 27 H 1.09007 * 109.46927 * 299.99580 * 1 2 3 28 28 H 1.09001 * 109.47565 * 59.99736 * 1 2 3 29 29 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47068 * 240.00117 * 2 1 3 31 31 H 1.08996 * 109.47327 * 119.99874 * 2 1 3 32 32 H 1.08994 * 109.46816 * 299.99542 * 5 3 2 33 33 H 1.08998 * 109.46911 * 59.99802 * 5 3 2 34 34 H 1.09004 * 109.46472 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.46983 * 179.97438 * 8 6 3 36 36 H 1.08994 * 109.47000 * 300.00539 * 8 6 3 37 37 H 1.08996 * 109.46517 * 60.00474 * 8 6 3 38 38 H 0.96993 * 120.00033 * 4.52198 * 11 9 6 39 39 H 1.08002 * 119.95938 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.93067 * 180.27287 * 14 13 12 41 41 H 1.08002 * 119.96699 * 179.71634 * 15 14 13 42 42 H 0.97004 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.06431 * 359.95706 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.9994 0.9054 -0.7161 8 6 3.9696 0.7603 1.4331 9 6 4.0671 2.8652 0.1263 10 8 3.2827 3.7858 0.0347 11 7 5.3880 3.1129 0.2276 12 6 5.8476 4.4314 0.3178 13 6 5.1992 5.4434 -0.3798 14 6 5.6493 6.7462 -0.2870 15 6 6.7517 7.0457 0.4901 16 6 7.4075 6.0378 1.1857 17 8 8.4909 6.3328 1.9487 18 6 9.1466 5.2957 2.5074 19 1 8.7576 4.2933 2.4066 20 6 10.3206 5.5162 3.2116 21 7 10.7948 6.7372 3.3340 22 14 11.2288 4.0795 3.9864 23 1 10.4941 2.8199 3.7055 24 1 12.5965 3.9921 3.4146 25 1 11.3182 4.2841 5.4545 26 6 6.9544 4.7290 1.0992 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5876 -2.1491 33 1 0.5488 2.1252 -1.3968 34 1 1.9981 3.1544 -1.3070 35 1 5.0560 0.7612 1.5224 36 1 3.5349 1.2993 2.2748 37 1 3.6063 -0.2673 1.4330 38 1 6.0203 2.3774 0.2340 39 1 4.3398 5.2117 -0.9915 40 1 5.1410 7.5317 -0.8266 41 1 7.1040 8.0645 0.5570 42 1 11.6163 6.8914 3.8263 43 1 7.4623 3.9438 1.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272437349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:32 Heat of formation + Delta-G solvation = -74.511185 kcal Electronic energy + Delta-G solvation = -23062.360884 eV Core-core repulsion = 19685.973876 eV Total energy + Delta-G solvation = -3376.387008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76991 -40.51593 -38.53942 -37.38936 -35.70434 -34.24754 -33.07833 -30.95861 -30.25382 -29.91116 -27.33411 -25.52923 -25.24388 -23.49816 -23.17892 -21.41439 -20.65714 -19.76780 -19.27100 -18.06066 -17.24696 -16.78607 -16.39886 -16.22281 -15.93678 -15.79930 -15.51094 -15.29984 -15.09431 -14.58743 -14.42666 -14.09941 -13.93738 -13.57404 -13.38514 -13.23857 -12.84638 -12.76562 -12.72185 -12.58944 -12.46380 -12.42840 -12.11921 -12.07995 -11.67216 -11.46693 -11.40415 -11.27356 -11.13940 -10.74571 -10.48218 -9.35009 -8.88852 -8.46369 -6.15385 0.40258 0.69410 1.36326 1.44643 1.54726 1.62603 2.08198 2.18287 2.83395 3.16066 3.48974 3.58128 3.72435 3.92733 4.10612 4.20218 4.32661 4.36019 4.39045 4.45465 4.58223 4.64810 4.68443 4.73674 4.78236 4.83388 4.92063 4.98668 5.02456 5.11651 5.13230 5.17412 5.23607 5.35254 5.35683 5.42009 5.48702 5.55679 5.62872 5.67075 5.70500 6.01906 6.18228 6.49180 6.97968 7.17531 7.77623 8.76965 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.003561 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.208898 B = 7860.536403 C = 9061.914829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.069 4.069 4 H 0.055 0.945 5 C -0.159 4.159 6 C -0.096 4.096 7 H 0.124 0.876 8 C -0.148 4.148 9 C 0.511 3.489 10 O -0.548 6.548 11 N -0.663 5.663 12 C 0.185 3.815 13 C -0.200 4.200 14 C -0.054 4.054 15 C -0.215 4.215 16 C 0.133 3.867 17 O -0.227 6.227 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.247 1.247 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.260 4.260 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.421 0.579 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.273 0.727 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 -17.203 -7.473 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.216 4.216 6 C -0.117 4.117 7 H 0.142 0.858 8 C -0.205 4.205 9 C 0.301 3.699 10 O -0.425 6.425 11 N -0.309 5.309 12 C 0.091 3.909 13 C -0.221 4.221 14 C -0.073 4.073 15 C -0.235 4.235 16 C 0.082 3.918 17 O -0.134 6.134 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.170 1.170 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.281 4.281 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.259 0.741 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.601 -16.301 -7.378 23.739 hybrid contribution 0.996 -0.123 0.555 1.147 sum -14.605 -16.424 -6.823 23.013 Atomic orbital electron populations 1.21822 0.95756 1.01983 1.01648 1.21640 0.96103 0.94463 1.03156 1.20941 0.91930 0.97335 0.98605 0.92622 1.22061 1.01479 1.01361 0.96653 1.21447 0.97830 0.89975 1.02424 0.85805 1.21906 1.02276 1.01977 0.94349 1.21606 0.80899 0.93208 0.74217 1.90630 1.55559 1.47761 1.48526 1.43568 1.08643 1.06222 1.72438 1.17496 0.93566 0.85392 0.94476 1.20987 1.03657 0.92595 1.04817 1.20935 0.93607 0.96737 0.95982 1.20486 1.00543 0.98338 1.04128 1.19595 0.88071 0.93748 0.90373 1.83977 1.36479 1.35853 1.57044 1.21863 1.06187 0.87924 1.32914 0.87870 1.26611 0.96681 1.01294 0.97467 1.70194 1.22070 1.22544 1.41106 0.84522 0.77753 0.76270 0.77613 1.17013 1.19410 1.19604 1.20854 1.02892 0.96883 1.07486 0.93437 0.92731 0.91742 0.90744 0.90535 0.92316 0.92312 0.92750 0.91337 0.93444 0.88449 0.74088 0.84818 0.83029 0.86416 0.91843 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 71.98 0.70 -1.20 16 2 C -0.12 -1.40 5.19 30.59 0.16 -1.24 16 3 C -0.07 -1.21 1.61 -10.79 -0.02 -1.23 16 4 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 5 C -0.16 -3.08 8.63 71.98 0.62 -2.46 16 6 C -0.10 -1.63 2.32 -11.54 -0.03 -1.66 16 7 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 8 C -0.15 -2.11 8.75 71.98 0.63 -1.48 16 9 C 0.51 13.55 6.70 87.66 0.59 14.14 16 10 O -0.55 -18.41 11.12 -3.06 -0.03 -18.44 16 11 N -0.66 -18.44 5.19 -303.55 -1.58 -20.02 16 12 C 0.19 6.88 6.29 38.14 0.24 7.12 16 13 C -0.20 -7.40 8.69 22.42 0.19 -7.21 16 14 C -0.05 -2.00 10.03 22.23 0.22 -1.77 16 15 C -0.22 -9.48 9.99 22.41 0.22 -9.26 16 16 C 0.13 6.70 6.65 22.56 0.15 6.85 16 17 O -0.23 -13.61 9.76 -22.72 -0.22 -13.83 16 18 C -0.41 -23.62 9.49 67.92 0.64 -22.97 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.16 13.67 21.61 0.30 -55.86 16 22 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 23 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 C -0.26 -11.30 9.08 22.51 0.20 -11.10 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.05 0.69 6.57 -2.39 -0.02 0.68 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.77 6.17 -2.39 -0.01 0.76 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.05 6.56 -2.39 -0.02 1.03 16 34 H 0.05 1.40 5.51 -2.38 -0.01 1.39 16 35 H 0.07 0.91 7.67 -2.38 -0.02 0.89 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 0.92 6.32 -2.39 -0.02 0.90 16 38 H 0.42 8.96 8.39 -92.71 -0.78 8.18 16 39 H 0.13 4.75 6.25 -2.91 -0.02 4.73 16 40 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.13 5.50 5.63 -2.91 -0.02 5.49 16 Total: -1.00 -73.10 344.84 5.73 -67.37 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.25 Total: 31.28 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.99 Total: -34.30 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.28 Total: -75.88 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.26 Total: -32.27 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.10 5.73 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272437349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.143 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds