Wall clock time and date at job start Tue Mar 31 2020 07:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 H 1.09004 * 109.46930 * 304.99750 * 3 2 1 5 5 C 1.50696 * 109.47300 * 184.99855 * 3 2 1 6 6 O 1.21284 * 120.00096 * 239.99841 * 5 3 2 7 7 N 1.34774 * 119.99838 * 59.99778 * 5 3 2 8 8 C 1.46506 * 120.00072 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00542 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00563 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99513 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47173 * 90.00033 * 14 12 10 16 16 H 1.48502 * 109.46811 * 209.99659 * 14 12 10 17 17 H 1.48495 * 109.47087 * 329.99741 * 14 12 10 18 18 C 1.50695 * 109.47399 * 64.99527 * 3 2 1 19 19 C 1.38273 * 119.94378 * 59.72426 * 18 3 2 20 20 C 1.38142 * 120.05734 * 179.72476 * 19 18 3 21 21 C 1.38738 * 119.94155 * 0.55083 * 20 19 18 22 22 O 1.35896 * 120.05319 * 179.74546 * 21 20 19 23 23 C 1.42900 * 117.00251 * 359.97438 * 22 21 20 24 24 C 1.38728 * 119.88653 * 359.72745 * 21 20 19 25 25 C 1.38137 * 119.94832 * 359.97438 * 24 21 20 26 26 H 1.08994 * 109.47423 * 300.00280 * 1 2 3 27 27 H 1.09004 * 109.47026 * 60.00811 * 1 2 3 28 28 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47235 * 240.00008 * 2 1 3 30 30 H 1.08996 * 109.47141 * 119.99457 * 2 1 3 31 31 H 0.97001 * 120.00676 * 359.97438 * 7 5 3 32 32 H 1.09001 * 109.47060 * 300.00359 * 8 7 5 33 33 H 1.09004 * 109.47073 * 59.99848 * 8 7 5 34 34 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 35 35 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 36 36 H 0.96999 * 120.00061 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.96645 * 0.02562 * 19 18 3 38 38 H 1.07995 * 120.02882 * 180.27623 * 20 19 18 39 39 H 1.08999 * 109.47405 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46830 * 299.99728 * 23 22 21 41 41 H 1.09004 * 109.47330 * 59.99663 * 23 22 21 42 42 H 1.08008 * 120.02296 * 179.97438 * 24 21 20 43 43 H 1.08001 * 119.97216 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 8 4.2216 1.9437 0.7478 7 7 4.1297 0.8912 -1.2031 8 6 5.5899 0.8925 -1.3232 9 6 5.9946 0.2091 -2.6308 10 6 7.4965 0.2099 -2.7541 11 1 8.1019 0.6539 -1.9776 12 6 8.0980 -0.3561 -3.8581 13 7 9.4088 -0.3549 -3.9659 14 14 7.0511 -1.1246 -5.2008 15 1 6.7182 -0.0959 -6.2187 16 1 7.8046 -2.2312 -5.8435 17 1 5.7985 -1.6577 -4.6077 18 6 1.6413 2.1164 1.2876 19 6 2.0727 1.6038 2.4972 20 6 1.7133 2.2229 3.6786 21 6 0.9093 3.3533 3.6514 22 8 0.5500 3.9611 4.8125 23 6 1.0358 3.3820 6.0253 24 6 0.4730 3.8621 2.4368 25 6 0.8403 3.2430 1.2578 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.5862 0.4915 -1.9000 32 1 5.9535 1.9201 -1.3229 33 1 6.0242 0.3532 -0.4813 34 1 5.6309 -0.8184 -2.6315 35 1 5.5603 0.7488 -3.4724 36 1 9.8318 -0.7528 -4.7428 37 1 2.6952 0.7216 2.5180 38 1 2.0542 1.8248 4.6229 39 1 0.6768 3.9631 6.8747 40 1 0.6757 2.3565 6.1079 41 1 2.1258 3.3849 6.0182 42 1 -0.1534 4.7418 2.4130 43 1 0.5012 3.6390 0.3120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273054965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:45 Heat of formation + Delta-G solvation = -68.819110 kcal Electronic energy + Delta-G solvation = -22705.890196 eV Core-core repulsion = 19329.750015 eV Total energy + Delta-G solvation = -3376.140181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55153 -39.49827 -37.61041 -34.96315 -34.83277 -32.75627 -31.15370 -30.36207 -30.20079 -28.00597 -26.74528 -24.60369 -23.18136 -22.18754 -21.46611 -20.78114 -19.63527 -18.29357 -17.04812 -16.84223 -16.44203 -15.90048 -15.78220 -15.06897 -14.84563 -14.62143 -14.29321 -14.15413 -13.79779 -13.70918 -13.47358 -13.20084 -12.71884 -12.63994 -12.53110 -12.21674 -12.07628 -11.79280 -11.49800 -11.39266 -11.20436 -11.08754 -10.89853 -10.76900 -10.39142 -10.24849 -9.97186 -9.46013 -9.28075 -9.00632 -8.64834 -8.51710 -8.15981 -6.11973 -4.12154 1.29047 1.36356 2.93967 3.10454 3.24256 3.31806 3.32998 3.49392 3.84706 4.36649 4.50482 4.62519 4.75549 4.80235 4.90085 4.91287 4.96596 5.12675 5.20540 5.20905 5.26933 5.30924 5.34465 5.46144 5.57993 5.63929 5.81332 5.92612 5.96983 6.06610 6.11427 6.19722 6.20332 6.30587 6.55454 6.58857 6.66042 6.76540 7.13382 7.22403 7.25522 7.65927 7.91712 8.42813 8.59162 8.92476 9.48099 11.01108 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.002953 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.309779 B = 9480.753128 C =10090.029626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.067 4.067 4 H 0.102 0.898 5 C 0.509 3.491 6 O -0.538 6.538 7 N -0.726 5.726 8 C 0.130 3.870 9 C -0.022 4.022 10 C -0.523 4.523 11 H 0.075 0.925 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.093 4.093 19 C -0.043 4.043 20 C -0.207 4.207 21 C 0.122 3.878 22 O -0.321 6.321 23 C 0.028 3.972 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.395 0.605 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.265 0.735 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.128 0.872 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.796 3.403 13.111 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.088 4.088 4 H 0.120 0.880 5 C 0.294 3.706 6 O -0.414 6.414 7 N -0.376 5.376 8 C 0.008 3.992 9 C -0.059 4.059 10 C -0.561 4.561 11 H 0.093 0.907 12 C -0.133 4.133 13 N -0.537 5.537 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.094 4.094 19 C -0.061 4.061 20 C -0.226 4.226 21 C 0.077 3.923 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.174 4.174 25 C -0.092 4.092 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.229 0.771 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.146 0.854 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.229 3.874 13.658 26.376 hybrid contribution -0.333 -0.785 -1.029 1.336 sum -22.562 3.089 12.629 26.040 Atomic orbital electron populations 1.21765 0.94901 1.01788 1.02210 1.21556 0.96714 0.93734 1.03117 1.20357 0.93274 0.98052 0.97130 0.87996 1.20412 0.89677 0.78354 0.82150 1.90706 1.65393 1.45186 1.40160 1.46327 1.09521 1.59354 1.22428 1.21494 0.76501 1.01213 0.99977 1.19788 0.98327 0.95687 0.92139 1.20923 0.89138 1.38839 1.07229 0.90659 1.25007 0.94862 0.95444 0.97997 1.69904 1.08796 1.45204 1.29786 0.86748 0.80783 0.79327 0.82195 1.20224 1.21278 1.19064 1.19174 0.99777 0.96766 0.93650 1.20701 0.95638 0.98742 0.91061 1.21173 1.03755 0.98238 0.99447 1.19015 0.95018 0.92226 0.86070 1.86038 1.71056 1.53397 1.12972 1.23035 0.99737 0.99194 0.84778 1.20298 1.04981 1.02453 0.89618 1.20796 0.96690 0.94244 0.97462 0.92309 0.92527 0.92522 0.90940 0.91206 0.77133 0.92046 0.92031 0.96029 0.96460 0.92545 0.85991 0.85669 0.88413 0.92728 0.92564 0.85404 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.73 37.16 0.36 -0.84 16 2 C -0.11 -1.09 5.24 -26.73 -0.14 -1.23 16 3 C -0.07 -0.77 2.38 -92.93 -0.22 -0.99 16 4 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 5 C 0.51 8.09 7.03 -10.99 -0.08 8.02 16 6 O -0.54 -10.71 15.13 5.55 0.08 -10.63 16 7 N -0.73 -11.65 5.42 -60.29 -0.33 -11.98 16 8 C 0.13 2.64 5.61 -4.04 -0.02 2.62 16 9 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 10 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 11 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 14 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 18 C -0.09 -1.14 3.38 -104.60 -0.35 -1.50 16 19 C -0.04 -0.56 7.87 -39.60 -0.31 -0.87 16 20 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 21 C 0.12 1.46 6.69 -39.22 -0.26 1.20 16 22 O -0.32 -3.56 10.50 -19.41 -0.20 -3.76 16 23 C 0.03 0.20 9.81 101.05 0.99 1.19 16 24 C -0.15 -1.76 9.99 -39.44 -0.39 -2.15 16 25 C -0.07 -0.82 9.66 -39.61 -0.38 -1.20 16 26 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.66 7.43 -51.93 -0.39 0.27 16 30 H 0.07 0.71 7.20 -51.93 -0.37 0.34 16 31 H 0.40 5.23 7.83 -40.82 -0.32 4.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.12 1.58 7.48 -52.49 -0.39 1.19 16 38 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 41 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.13 1.11 7.94 -52.49 -0.42 0.70 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -33.44 353.52 -7.43 -40.86 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.70 Total: 2.75 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.71 Total: -12.27 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.45 Total: -38.54 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.44 -7.43 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273054965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.954 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds