Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 H 1.09004 * 109.46930 * 304.99750 * 3 2 1 5 5 C 1.50696 * 109.47300 * 184.99855 * 3 2 1 6 6 O 1.21284 * 120.00096 * 239.99841 * 5 3 2 7 7 N 1.34774 * 119.99838 * 59.99778 * 5 3 2 8 8 C 1.46506 * 120.00072 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00542 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00563 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99513 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47173 * 90.00033 * 14 12 10 16 16 H 1.48502 * 109.46811 * 209.99659 * 14 12 10 17 17 H 1.48495 * 109.47087 * 329.99741 * 14 12 10 18 18 C 1.50695 * 109.47399 * 64.99527 * 3 2 1 19 19 C 1.38273 * 119.94378 * 59.72426 * 18 3 2 20 20 C 1.38142 * 120.05734 * 179.72476 * 19 18 3 21 21 C 1.38738 * 119.94155 * 0.55083 * 20 19 18 22 22 O 1.35896 * 120.05319 * 179.74546 * 21 20 19 23 23 C 1.42900 * 117.00251 * 359.97438 * 22 21 20 24 24 C 1.38728 * 119.88653 * 359.72745 * 21 20 19 25 25 C 1.38137 * 119.94832 * 359.97438 * 24 21 20 26 26 H 1.08994 * 109.47423 * 300.00280 * 1 2 3 27 27 H 1.09004 * 109.47026 * 60.00811 * 1 2 3 28 28 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47235 * 240.00008 * 2 1 3 30 30 H 1.08996 * 109.47141 * 119.99457 * 2 1 3 31 31 H 0.97001 * 120.00676 * 359.97438 * 7 5 3 32 32 H 1.09001 * 109.47060 * 300.00359 * 8 7 5 33 33 H 1.09004 * 109.47073 * 59.99848 * 8 7 5 34 34 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 35 35 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 36 36 H 0.96999 * 120.00061 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.96645 * 0.02562 * 19 18 3 38 38 H 1.07995 * 120.02882 * 180.27623 * 20 19 18 39 39 H 1.08999 * 109.47405 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46830 * 299.99728 * 23 22 21 41 41 H 1.09004 * 109.47330 * 59.99663 * 23 22 21 42 42 H 1.08008 * 120.02296 * 179.97438 * 24 21 20 43 43 H 1.08001 * 119.97216 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 8 4.2216 1.9437 0.7478 7 7 4.1297 0.8912 -1.2031 8 6 5.5899 0.8925 -1.3232 9 6 5.9946 0.2091 -2.6308 10 6 7.4965 0.2099 -2.7541 11 1 8.1019 0.6539 -1.9776 12 6 8.0980 -0.3561 -3.8581 13 7 9.4088 -0.3549 -3.9659 14 14 7.0511 -1.1246 -5.2008 15 1 6.7182 -0.0959 -6.2187 16 1 7.8046 -2.2312 -5.8435 17 1 5.7985 -1.6577 -4.6077 18 6 1.6413 2.1164 1.2876 19 6 2.0727 1.6038 2.4972 20 6 1.7133 2.2229 3.6786 21 6 0.9093 3.3533 3.6514 22 8 0.5500 3.9611 4.8125 23 6 1.0358 3.3820 6.0253 24 6 0.4730 3.8621 2.4368 25 6 0.8403 3.2430 1.2578 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.5862 0.4915 -1.9000 32 1 5.9535 1.9201 -1.3229 33 1 6.0242 0.3532 -0.4813 34 1 5.6309 -0.8184 -2.6315 35 1 5.5603 0.7488 -3.4724 36 1 9.8318 -0.7528 -4.7428 37 1 2.6952 0.7216 2.5180 38 1 2.0542 1.8248 4.6229 39 1 0.6768 3.9631 6.8747 40 1 0.6757 2.3565 6.1079 41 1 2.1258 3.3849 6.0182 42 1 -0.1534 4.7418 2.4130 43 1 0.5012 3.6390 0.3120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273054965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -90.756418 kcal Electronic energy + Delta-G solvation = -22706.841469 eV Core-core repulsion = 19329.750015 eV Total energy + Delta-G solvation = -3377.091454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52812 -40.56528 -38.56615 -36.58826 -35.72765 -34.72111 -32.07185 -31.94429 -31.13825 -28.83276 -27.75361 -26.25612 -24.01831 -22.98014 -22.84573 -22.32364 -20.78775 -19.10833 -18.99238 -18.10332 -17.41273 -16.88669 -16.63355 -16.40614 -16.23791 -15.94161 -15.51472 -15.20866 -15.03955 -14.74120 -14.55682 -14.54897 -14.15790 -13.52425 -13.45377 -13.32401 -13.04683 -12.89399 -12.87627 -12.57569 -12.21884 -12.14823 -12.07364 -11.87428 -11.75509 -11.62731 -11.57860 -11.51140 -10.78758 -10.70776 -10.02120 -9.89402 -9.03635 -8.30015 -6.37568 0.41857 0.45806 1.39627 1.42490 1.53770 1.68637 2.28181 2.37283 2.39407 2.86876 3.05153 3.60062 3.75675 3.91500 3.99997 4.07264 4.26670 4.32812 4.36252 4.38756 4.42113 4.44676 4.53467 4.58219 4.66479 4.72826 4.75483 4.77495 4.93636 5.10463 5.14727 5.17869 5.24169 5.34139 5.40802 5.41279 5.44882 5.47084 5.65764 5.69773 5.82855 6.22221 6.44610 6.64435 6.72203 7.27019 7.33611 8.86922 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.002953 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.309779 B = 9480.753128 C =10090.029626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.054 4.054 4 H 0.131 0.869 5 C 0.508 3.492 6 O -0.583 6.583 7 N -0.715 5.715 8 C 0.146 3.854 9 C -0.012 4.012 10 C -0.540 4.540 11 H 0.026 0.974 12 C 0.002 3.998 13 N -0.952 5.952 14 Si 0.960 3.040 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.234 1.234 18 C -0.106 4.106 19 C -0.061 4.061 20 C -0.217 4.217 21 C 0.111 3.889 22 O -0.334 6.334 23 C 0.019 3.981 24 C -0.163 4.163 25 C -0.073 4.073 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.414 0.586 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.144 0.856 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.314 2.974 11.813 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.075 4.075 4 H 0.149 0.851 5 C 0.295 3.705 6 O -0.463 6.463 7 N -0.367 5.367 8 C 0.022 3.978 9 C -0.050 4.050 10 C -0.578 4.578 11 H 0.044 0.956 12 C -0.194 4.194 13 N -0.592 5.592 14 Si 0.782 3.218 15 H -0.190 1.190 16 H -0.213 1.213 17 H -0.157 1.157 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.236 4.236 21 C 0.066 3.934 22 O -0.248 6.248 23 C -0.075 4.075 24 C -0.182 4.182 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.250 0.750 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.162 0.838 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.794 3.440 12.372 28.814 hybrid contribution 0.844 -0.583 -0.469 1.129 sum -24.950 2.856 11.902 27.791 Atomic orbital electron populations 1.21715 0.93264 1.02504 1.02562 1.21574 0.98020 0.92190 1.03107 1.20368 0.89417 0.99803 0.97924 0.85092 1.21240 0.91540 0.76793 0.80915 1.90692 1.66904 1.46992 1.41667 1.46066 1.07611 1.59637 1.23370 1.20986 0.79259 0.99332 0.98260 1.19643 0.94632 0.97013 0.93667 1.21271 0.91967 1.38435 1.06177 0.95563 1.26116 0.96270 0.95961 1.01097 1.70082 1.11332 1.46737 1.31054 0.85520 0.79645 0.78330 0.78268 1.18966 1.21347 1.15688 1.19334 1.00337 0.97448 0.93587 1.20768 0.96212 0.98931 0.92047 1.21336 1.03950 0.98484 0.99796 1.19232 0.95032 0.92266 0.86856 1.86021 1.71300 1.53897 1.13604 1.23298 0.99860 1.00239 0.84099 1.20621 1.05020 1.02953 0.89596 1.21099 0.95948 0.93458 0.98583 0.93083 0.91006 0.91671 0.89823 0.92419 0.74953 0.94174 0.94102 0.94362 0.94546 0.92339 0.87149 0.84508 0.86040 0.91756 0.92665 0.83812 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.73 71.98 0.70 -1.15 16 2 C -0.11 -1.87 5.24 30.60 0.16 -1.71 16 3 C -0.05 -1.13 2.38 -12.29 -0.03 -1.16 16 4 H 0.13 2.00 7.87 -2.38 -0.02 1.98 16 5 C 0.51 15.64 7.03 87.66 0.62 16.26 16 6 O -0.58 -23.59 15.13 -3.04 -0.05 -23.64 16 7 N -0.71 -21.77 5.42 -463.05 -2.51 -24.27 16 8 C 0.15 5.93 5.61 86.38 0.48 6.42 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C -0.54 -30.89 9.66 25.60 0.25 -30.64 16 11 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 12 C 0.00 0.14 5.47 84.65 0.46 0.61 16 13 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 14 Si 0.96 41.93 27.47 68.60 1.88 43.82 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 16 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.23 -8.96 6.54 99.48 0.65 -8.31 16 18 C -0.11 -2.47 3.38 -19.85 -0.07 -2.54 16 19 C -0.06 -1.58 7.87 22.26 0.18 -1.40 16 20 C -0.22 -5.14 9.04 22.37 0.20 -4.94 16 21 C 0.11 2.59 6.69 22.51 0.15 2.74 16 22 O -0.33 -7.10 10.50 -92.38 -0.97 -8.07 16 23 C 0.02 0.26 9.81 113.37 1.11 1.38 16 24 C -0.16 -3.47 9.99 22.36 0.22 -3.24 16 25 C -0.07 -1.47 9.66 22.25 0.22 -1.25 16 26 H 0.05 0.75 7.38 -2.39 -0.02 0.73 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.22 7.43 -2.39 -0.02 1.20 16 30 H 0.06 1.11 7.20 -2.39 -0.02 1.10 16 31 H 0.41 9.55 7.83 -92.71 -0.73 8.82 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 34 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 35 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.11 2.99 7.48 -2.91 -0.02 2.97 16 38 H 0.14 2.71 6.30 -2.91 -0.02 2.70 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.74 7.66 -2.38 -0.02 0.72 16 41 H 0.05 0.76 7.66 -2.38 -0.02 0.74 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.15 2.16 7.94 -2.91 -0.02 2.13 16 Total: -1.00 -75.54 353.52 3.66 -71.88 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.22 Total: 20.54 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 4.78 Total: -21.04 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.21 Total: -83.50 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.02 Total: -31.71 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -75.54 3.66 -71.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273054965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.872 kcal (2) G-P(sol) polarization free energy of solvation -75.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds