Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 C 1.53000 * 109.47561 * 120.00502 * 2 1 3 5 5 O 1.42896 * 109.47632 * 174.99656 * 4 2 1 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47034 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47486 * 90.00046 * 19 17 15 21 21 H 1.48507 * 109.47160 * 210.00309 * 19 17 15 22 22 H 1.48501 * 109.47007 * 329.99773 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.46996 * 299.99733 * 1 2 3 26 26 H 1.08997 * 109.47347 * 59.99746 * 1 2 3 27 27 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46810 * 239.99971 * 2 1 3 29 29 H 1.09000 * 109.47358 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47061 * 300.00429 * 3 2 1 31 31 H 1.08999 * 109.46811 * 60.00154 * 3 2 1 32 32 H 1.09007 * 109.46974 * 54.99048 * 4 2 1 33 33 H 1.09005 * 109.46584 * 295.00094 * 4 2 1 34 34 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 38 38 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 39 39 H 1.08997 * 109.47263 * 300.00438 * 14 13 12 40 40 H 1.09005 * 109.47165 * 59.99794 * 14 13 12 41 41 H 0.96999 * 120.00277 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.04691 * 180.02562 * 23 9 8 43 43 H 1.07999 * 119.95155 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8240 1.1919 6 6 4.0797 -1.4417 2.2316 7 6 3.3244 -1.9451 3.2843 8 6 3.9456 -2.5679 4.3438 9 6 5.3363 -2.7039 4.3541 10 6 6.0057 -3.3766 5.4845 11 8 5.3469 -3.8138 6.4082 12 7 7.3471 -3.5063 5.4929 13 6 8.0116 -4.1746 6.6147 14 6 9.5229 -4.1881 6.3775 15 6 10.2064 -4.8750 7.5316 16 1 9.6213 -5.2634 8.3521 17 6 11.5786 -5.0085 7.5397 18 7 12.2913 -4.5360 6.5404 19 14 12.4258 -5.8605 8.9701 20 1 12.5348 -7.3140 8.6863 21 1 13.7841 -5.2886 9.1528 22 1 11.6320 -5.6561 10.2084 23 6 6.0916 -2.2015 3.2912 24 6 5.4632 -1.5752 2.2380 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 2.2492 -1.8437 3.2736 35 1 3.3584 -2.9549 5.1635 36 1 7.8727 -3.1578 4.7558 37 1 7.7931 -3.6381 7.5380 38 1 7.6474 -5.1988 6.6946 39 1 9.7410 -4.7247 5.4541 40 1 9.8874 -3.1639 6.2972 41 1 13.2567 -4.6296 6.5463 42 1 7.1666 -2.3049 3.2953 43 1 6.0462 -1.1871 1.4159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273076845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -76.804127 kcal Electronic energy + Delta-G solvation = -21800.500112 eV Core-core repulsion = 18424.013674 eV Total energy + Delta-G solvation = -3376.486437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55648 -39.31939 -37.45343 -35.57444 -34.88987 -32.89339 -31.26963 -30.71222 -29.13884 -27.62796 -27.07239 -24.99081 -23.09309 -22.84565 -21.00066 -20.65817 -20.09504 -18.55402 -17.44692 -16.57380 -16.41422 -16.10982 -15.25289 -14.91846 -14.90354 -14.68331 -14.50050 -14.21798 -13.83447 -13.65867 -13.35304 -13.16116 -12.88670 -12.69840 -12.52030 -12.43473 -12.26564 -11.62648 -11.56280 -11.34541 -11.18508 -11.05083 -10.97070 -10.89220 -10.63530 -10.32465 -9.84307 -9.48330 -9.23187 -9.21379 -8.60350 -8.42818 -8.24564 -6.08809 -4.11557 0.88236 1.19711 2.81506 3.03853 3.30156 3.36161 3.40181 3.68929 3.91999 4.26195 4.33340 4.42546 4.57583 4.61334 4.65309 4.89756 4.95069 5.00117 5.09251 5.15598 5.18866 5.26076 5.28244 5.38014 5.41461 5.45055 5.58966 5.77504 5.83891 5.86384 6.02982 6.12433 6.24576 6.35928 6.40977 6.49006 6.74504 6.91441 7.12764 7.52220 7.62046 7.89383 8.01668 8.28364 8.64681 8.94344 9.53202 11.02779 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.045294 B = 0.002190 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.039672 B =12784.835156 C =13292.306662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.061 3.939 5 O -0.311 6.311 6 C 0.149 3.851 7 C -0.220 4.220 8 C -0.021 4.021 9 C -0.166 4.166 10 C 0.551 3.449 11 O -0.552 6.552 12 N -0.717 5.717 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.046 4.046 24 C -0.159 4.159 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.137 0.863 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.458 10.595 -15.213 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.015 4.015 5 O -0.224 6.224 6 C 0.103 3.897 7 C -0.239 4.239 8 C -0.040 4.040 9 C -0.170 4.170 10 C 0.338 3.662 11 O -0.431 6.431 12 N -0.367 5.367 13 C -0.001 4.001 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.064 4.064 24 C -0.178 4.178 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.634 10.378 -14.766 28.174 hybrid contribution 0.684 -0.355 0.493 0.915 sum -20.951 10.024 -14.273 27.260 Atomic orbital electron populations 1.21788 0.93740 1.02292 1.02588 1.21133 0.95851 0.97038 0.97342 1.21830 1.02038 0.94874 1.01790 1.22974 0.78521 1.00588 0.99373 1.86005 1.21819 1.73121 1.41433 1.19222 0.92330 0.91472 0.86648 1.21189 1.00203 1.06418 0.96070 1.21061 0.93319 0.92975 0.96644 1.20034 0.94446 1.05531 0.96971 1.18161 0.82630 0.79539 0.85854 1.90738 1.64925 1.50195 1.37289 1.46268 1.06217 1.58969 1.25247 1.21754 0.95360 0.95878 0.87082 1.19335 0.87204 0.97968 0.98067 1.21048 0.91807 1.37563 1.05580 0.92218 1.25000 0.97514 0.95568 0.96240 1.69954 1.06314 1.45920 1.31097 0.86505 0.78758 0.79640 0.82606 1.20568 1.21175 1.19737 1.21217 1.00058 0.93566 0.91592 1.20342 0.91326 1.05177 1.00960 0.92265 0.91656 0.92279 0.90000 0.91749 0.92449 0.92666 0.91792 0.91750 0.85096 0.84412 0.76891 0.92399 0.92414 0.95892 0.95884 0.92849 0.84551 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.19 37.15 0.34 -0.29 16 2 C -0.10 -0.56 3.16 -90.62 -0.29 -0.84 16 3 C -0.15 -0.89 9.09 37.16 0.34 -0.55 16 4 C 0.06 0.43 4.11 37.16 0.15 0.58 16 5 O -0.31 -3.08 9.66 -18.81 -0.18 -3.26 16 6 C 0.15 1.65 6.70 -39.02 -0.26 1.39 16 7 C -0.22 -2.38 9.01 -39.49 -0.36 -2.73 16 8 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 9 C -0.17 -2.41 5.87 -104.96 -0.62 -3.03 16 10 C 0.55 9.99 7.76 -12.44 -0.10 9.89 16 11 O -0.55 -11.83 16.34 5.29 0.09 -11.75 16 12 N -0.72 -13.00 5.51 -61.33 -0.34 -13.34 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 14 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.05 -0.55 9.53 -39.22 -0.37 -0.93 16 24 C -0.16 -1.77 9.97 -39.50 -0.39 -2.16 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 7.82 -51.93 -0.41 0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 7.64 -51.93 -0.40 0.01 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 1.09 6.28 -52.48 -0.33 0.76 16 35 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 36 H 0.40 6.17 6.49 -40.82 -0.27 5.91 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 1.43 6.39 -52.48 -0.34 1.10 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -32.24 360.37 -8.51 -40.75 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.72 Total: 0.99 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.50 Total: -9.86 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.40 Total: -38.74 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.10 Total: -15.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.24 -8.51 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273076845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.055 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds