Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 C 1.53000 * 109.47561 * 120.00502 * 2 1 3 5 5 O 1.42896 * 109.47632 * 174.99656 * 4 2 1 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47034 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47486 * 90.00046 * 19 17 15 21 21 H 1.48507 * 109.47160 * 210.00309 * 19 17 15 22 22 H 1.48501 * 109.47007 * 329.99773 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.46996 * 299.99733 * 1 2 3 26 26 H 1.08997 * 109.47347 * 59.99746 * 1 2 3 27 27 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46810 * 239.99971 * 2 1 3 29 29 H 1.09000 * 109.47358 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47061 * 300.00429 * 3 2 1 31 31 H 1.08999 * 109.46811 * 60.00154 * 3 2 1 32 32 H 1.09007 * 109.46974 * 54.99048 * 4 2 1 33 33 H 1.09005 * 109.46584 * 295.00094 * 4 2 1 34 34 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 38 38 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 39 39 H 1.08997 * 109.47263 * 300.00438 * 14 13 12 40 40 H 1.09005 * 109.47165 * 59.99794 * 14 13 12 41 41 H 0.96999 * 120.00277 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.04691 * 180.02562 * 23 9 8 43 43 H 1.07999 * 119.95155 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8240 1.1919 6 6 4.0797 -1.4417 2.2316 7 6 3.3244 -1.9451 3.2843 8 6 3.9456 -2.5679 4.3438 9 6 5.3363 -2.7039 4.3541 10 6 6.0057 -3.3766 5.4845 11 8 5.3469 -3.8138 6.4082 12 7 7.3471 -3.5063 5.4929 13 6 8.0116 -4.1746 6.6147 14 6 9.5229 -4.1881 6.3775 15 6 10.2064 -4.8750 7.5316 16 1 9.6213 -5.2634 8.3521 17 6 11.5786 -5.0085 7.5397 18 7 12.2913 -4.5360 6.5404 19 14 12.4258 -5.8605 8.9701 20 1 12.5348 -7.3140 8.6863 21 1 13.7841 -5.2886 9.1528 22 1 11.6320 -5.6561 10.2084 23 6 6.0916 -2.2015 3.2912 24 6 5.4632 -1.5752 2.2380 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 2.2492 -1.8437 3.2736 35 1 3.3584 -2.9549 5.1635 36 1 7.8727 -3.1578 4.7558 37 1 7.7931 -3.6381 7.5380 38 1 7.6474 -5.1988 6.6946 39 1 9.7410 -4.7247 5.4541 40 1 9.8874 -3.1639 6.2972 41 1 13.2567 -4.6296 6.5463 42 1 7.1666 -2.3049 3.2953 43 1 6.0462 -1.1871 1.4159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273076845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -95.780850 kcal Electronic energy + Delta-G solvation = -21801.323004 eV Core-core repulsion = 18424.013674 eV Total energy + Delta-G solvation = -3377.309330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51090 -40.54412 -38.40361 -36.64236 -36.13945 -34.86365 -32.36061 -31.97801 -30.64990 -28.04157 -27.70908 -26.82378 -24.37057 -23.73556 -22.79766 -21.55224 -21.04596 -19.43393 -18.75536 -18.36955 -17.32974 -17.06040 -16.52243 -16.47911 -16.41369 -15.89891 -15.36486 -15.03428 -14.92984 -14.86331 -14.54584 -14.30526 -14.10747 -13.61476 -13.49295 -13.32569 -13.21430 -12.98760 -12.92996 -12.53720 -12.29245 -12.19238 -12.04496 -12.01674 -11.69135 -11.58560 -11.50960 -11.47214 -10.97156 -10.60514 -10.14998 -10.09368 -9.28555 -8.23957 -6.34366 -0.15000 0.28790 1.42119 1.42604 1.54095 1.82094 2.10372 2.22037 2.45053 2.81397 3.10691 3.67058 3.75586 3.78309 3.85708 3.92429 4.12555 4.15779 4.30248 4.42820 4.48144 4.48753 4.50847 4.57911 4.67672 4.80887 4.83874 4.95667 4.99938 5.02082 5.10229 5.18702 5.22405 5.26681 5.32128 5.38213 5.41309 5.47978 5.57434 5.59783 5.78269 6.15796 6.33555 6.58445 6.78445 7.20790 7.34757 8.87843 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.045294 B = 0.002190 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.039672 B =12784.835156 C =13292.306662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.148 4.148 4 C 0.051 3.949 5 O -0.316 6.316 6 C 0.156 3.844 7 C -0.214 4.214 8 C -0.027 4.027 9 C -0.191 4.191 10 C 0.552 3.448 11 O -0.591 6.591 12 N -0.713 5.713 13 C 0.140 3.860 14 C 0.022 3.978 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.042 4.042 24 C -0.162 4.162 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.409 0.591 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.149 0.851 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 11.139 -16.128 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.023 4.023 5 O -0.229 6.229 6 C 0.109 3.891 7 C -0.232 4.232 8 C -0.046 4.046 9 C -0.194 4.194 10 C 0.342 3.658 11 O -0.474 6.474 12 N -0.364 5.364 13 C 0.016 3.984 14 C -0.015 4.015 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.060 4.060 24 C -0.180 4.180 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.697 10.941 -15.715 29.695 hybrid contribution 0.915 -0.442 0.649 1.205 sum -21.782 10.499 -15.066 28.490 Atomic orbital electron populations 1.21776 0.92393 1.02814 1.03147 1.21149 0.96861 0.96585 0.96561 1.21832 1.01080 0.95253 1.02385 1.23267 0.76993 1.01613 1.00460 1.86025 1.23500 1.72501 1.40829 1.19378 0.92534 0.90502 0.86700 1.21377 1.01533 1.05307 0.95012 1.21113 0.92767 0.93393 0.97335 1.19792 0.95128 1.07740 0.96763 1.18699 0.82096 0.78742 0.86304 1.90706 1.65591 1.52018 1.39104 1.46066 1.06637 1.58911 1.24760 1.21274 0.93511 0.95614 0.87966 1.19145 0.89069 0.96570 0.96743 1.21459 0.92585 1.38089 1.06442 0.92296 1.25875 0.98212 0.96147 0.98966 1.70055 1.06752 1.46836 1.32841 0.85434 0.77646 0.78646 0.79248 1.19766 1.20468 1.19125 1.21318 1.00613 0.93028 0.91067 1.20570 0.91775 1.04658 1.01021 0.91853 0.91001 0.91792 0.90368 0.93197 0.91559 0.92444 0.90702 0.90866 0.82447 0.84912 0.75384 0.93382 0.93371 0.97159 0.97158 0.92523 0.83365 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.19 71.98 0.66 -0.23 16 2 C -0.09 -0.89 3.16 -10.80 -0.03 -0.92 16 3 C -0.15 -1.52 9.09 71.98 0.65 -0.87 16 4 C 0.05 0.60 4.11 71.98 0.30 0.90 16 5 O -0.32 -5.52 9.66 -90.23 -0.87 -6.39 16 6 C 0.16 3.09 6.70 22.63 0.15 3.24 16 7 C -0.21 -4.19 9.01 22.33 0.20 -3.99 16 8 C -0.03 -0.68 9.58 22.51 0.22 -0.47 16 9 C -0.19 -5.48 5.87 -20.08 -0.12 -5.60 16 10 C 0.55 20.34 7.76 86.71 0.67 21.01 16 11 O -0.59 -26.07 16.34 -3.99 -0.07 -26.13 16 12 N -0.71 -26.26 5.51 -466.22 -2.57 -28.83 16 13 C 0.14 6.21 5.61 86.38 0.48 6.70 16 14 C 0.02 1.13 5.09 29.85 0.15 1.28 16 15 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.39 5.46 84.65 0.46 0.85 16 18 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 19 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.04 -0.96 9.53 22.51 0.21 -0.75 16 24 C -0.16 -3.26 9.97 22.33 0.22 -3.04 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.74 7.64 -2.38 -0.02 0.72 16 33 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 34 H 0.16 2.16 6.28 -2.91 -0.02 2.14 16 35 H 0.13 3.44 7.64 -2.91 -0.02 3.42 16 36 H 0.41 12.81 6.49 -92.71 -0.60 12.21 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.15 2.95 6.39 -2.91 -0.02 2.94 16 43 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -69.01 360.37 3.67 -65.33 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.39 Total: 16.72 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.47 Total: -12.54 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.28 Total: -82.92 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.94 Total: -32.52 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.01 3.67 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273076845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.448 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds