Wall clock time and date at job start Tue Mar 31 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37094 * 119.99733 * 2 1 4 4 H 1.08007 * 119.99696 * 183.14208 * 3 2 1 5 5 C 1.38946 * 120.00406 * 3.15003 * 3 2 1 6 6 N 1.31414 * 119.99649 * 7.21212 * 5 3 2 7 7 Si 1.86800 * 120.00200 * 187.21469 * 5 3 2 8 8 H 1.48495 * 109.47117 * 59.99589 * 7 5 3 9 9 H 1.48495 * 109.47091 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46916 * 299.99679 * 7 5 3 11 11 C 1.34774 * 119.99836 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00228 * 354.69322 * 11 2 1 13 13 C 1.50703 * 119.99879 * 174.69353 * 11 2 1 14 14 C 1.53000 * 109.46939 * 62.33963 * 13 11 2 15 15 C 1.52996 * 109.47326 * 302.33849 * 13 11 2 16 16 C 1.52999 * 109.46837 * 182.33675 * 13 11 2 17 17 O 1.42901 * 109.46836 * 180.02562 * 16 13 11 18 18 C 1.42906 * 113.99988 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.38226 * 119.99934 * 90.00527 * 19 18 17 21 21 C 1.38237 * 119.99836 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00191 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00050 * 0.27835 * 22 21 20 24 24 C 1.38238 * 119.99463 * 359.51056 * 23 22 21 25 25 H 1.08998 * 109.46730 * 174.46535 * 1 2 3 26 26 H 1.09004 * 109.46790 * 294.46000 * 1 2 3 27 27 H 1.08997 * 109.47287 * 54.46574 * 1 2 3 28 28 H 0.97001 * 119.99356 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.47137 * 189.62720 * 14 13 11 30 30 H 1.09001 * 109.47159 * 309.63161 * 14 13 11 31 31 H 1.09008 * 109.47107 * 69.63468 * 14 13 11 32 32 H 1.08999 * 109.47084 * 303.55216 * 15 13 11 33 33 H 1.09008 * 109.46832 * 63.54318 * 15 13 11 34 34 H 1.08994 * 109.47208 * 183.54284 * 15 13 11 35 35 H 1.08998 * 109.46994 * 60.00559 * 16 13 11 36 36 H 1.08991 * 109.47710 * 299.99910 * 16 13 11 37 37 H 1.09001 * 109.47105 * 60.00463 * 18 17 16 38 38 H 1.08999 * 109.47177 * 300.00161 * 18 17 16 39 39 H 1.07998 * 120.00374 * 359.96764 * 20 19 18 40 40 H 1.07997 * 120.00057 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.00359 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00195 * 179.72602 * 23 22 21 43 43 H 1.07996 * 119.99809 * 180.27890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2293 1.1880 -0.0513 5 6 1.4574 2.3897 0.0661 6 7 0.1593 2.3894 0.2711 7 14 2.3706 4.0066 -0.1364 8 1 3.0245 4.0423 -1.4691 9 1 1.4108 5.1344 -0.0261 10 1 3.4024 4.1286 0.9247 11 6 2.1389 -1.1672 -0.0005 12 8 1.5363 -2.2155 0.0962 13 6 3.6411 -1.1700 -0.1212 14 6 4.2505 -0.4434 1.0795 15 6 4.0505 -0.4559 -1.4109 16 6 4.1473 -2.6134 -0.1546 17 8 5.5718 -2.6160 -0.2685 18 6 6.1493 -3.9225 -0.3088 19 6 7.6471 -3.8062 -0.4284 20 6 8.4289 -3.7478 0.7100 21 6 9.8028 -3.6417 0.6003 22 6 10.3949 -3.5943 -0.6479 23 6 9.6126 -3.6474 -1.7865 24 6 8.2391 -3.7580 -1.6767 25 1 -0.3633 -1.0229 -0.0991 26 1 -0.3633 0.4255 0.9355 27 1 -0.3634 0.5972 -0.8363 28 1 -0.3245 3.2289 0.3176 29 1 5.3170 -0.2945 0.9110 30 1 3.7638 0.5239 1.2042 31 1 4.1049 -1.0421 1.9787 32 1 3.5655 -0.9353 -2.2613 33 1 3.7449 0.5892 -1.3603 34 1 5.1324 -0.5127 -1.5300 35 1 3.7132 -3.1309 -1.0100 36 1 3.8558 -3.1221 0.7641 37 1 5.7570 -4.4668 -1.1679 38 1 5.8988 -4.4589 0.6064 39 1 7.9664 -3.7851 1.6852 40 1 10.4136 -3.5957 1.4897 41 1 11.4683 -3.5118 -0.7337 42 1 10.0749 -3.6060 -2.7617 43 1 7.6283 -3.8040 -2.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282015239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:54 Heat of formation + Delta-G solvation = -35.521801 kcal Electronic energy + Delta-G solvation = -23505.494095 eV Core-core repulsion = 20130.797793 eV Total energy + Delta-G solvation = -3374.696302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.54053 -39.16436 -37.28855 -34.85822 -34.14377 -31.79797 -31.30482 -30.99262 -26.96827 -26.51125 -25.98571 -25.17056 -24.56353 -22.66704 -21.36605 -20.79966 -18.63349 -17.44087 -16.84736 -16.21401 -15.84739 -15.39496 -15.27243 -14.67240 -14.38591 -14.16414 -13.92857 -13.72190 -13.50046 -12.93534 -12.86684 -12.76759 -12.67071 -12.06867 -11.76162 -11.62838 -11.40159 -11.27363 -11.21117 -11.05107 -10.98815 -10.91080 -10.57602 -10.45400 -10.32924 -10.25024 -9.31733 -9.26658 -9.07137 -9.00815 -8.91042 -8.21972 -7.88940 -6.29785 -3.87675 1.19023 1.31292 3.10101 3.18245 3.19084 3.53491 3.90331 4.02131 4.16292 4.74531 4.76680 4.89632 5.00636 5.07276 5.13771 5.23699 5.37990 5.44286 5.55974 5.58581 5.61807 5.78868 5.88330 5.95198 6.08777 6.21976 6.24337 6.34924 6.39148 6.49410 6.54757 6.57865 6.63844 6.73394 6.88886 6.92288 7.03529 7.07324 7.26256 7.44848 7.50017 7.51877 7.74768 8.38319 9.05160 9.53877 9.92787 10.63746 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003697 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.758701 B = 7571.405362 C = 8351.055944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.438 5.438 3 C -0.341 4.341 4 H 0.125 0.875 5 C 0.032 3.968 6 N -0.874 5.874 7 Si 0.920 3.080 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.459 3.541 12 O -0.620 6.620 13 C -0.056 4.056 14 C -0.152 4.152 15 C -0.147 4.147 16 C 0.092 3.908 17 O -0.377 6.377 18 C 0.101 3.899 19 C -0.082 4.082 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.099 4.099 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.369 -7.803 -1.720 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.155 5.155 3 C -0.468 4.468 4 H 0.142 0.858 5 C -0.172 4.172 6 N -0.513 5.513 7 Si 0.747 3.253 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.196 1.196 11 C 0.247 3.753 12 O -0.508 6.508 13 C -0.059 4.059 14 C -0.209 4.209 15 C -0.204 4.204 16 C 0.015 3.985 17 O -0.297 6.297 18 C 0.024 3.976 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.117 4.117 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.960 -7.939 -1.661 17.017 hybrid contribution 0.166 0.733 -0.076 0.756 sum 15.126 -7.206 -1.737 16.844 Atomic orbital electron populations 1.21530 0.79813 0.97364 1.03300 1.43606 1.06107 1.04661 1.61094 1.20278 0.93425 0.82680 1.50401 0.85837 1.25341 0.95739 0.99741 0.96339 1.70219 1.07016 1.27247 1.46828 0.86086 0.79039 0.80967 0.79249 1.19658 1.20775 1.19613 1.19641 0.88308 0.83771 0.83609 1.90502 1.70145 1.31752 1.58427 1.20268 0.93528 0.94017 0.98068 1.22110 1.00438 1.02680 0.95652 1.22041 1.00569 1.02871 0.94927 1.22257 0.78856 0.96876 1.00508 1.87909 1.21034 1.25779 1.94961 1.21240 0.89262 0.86331 1.00721 1.19697 0.94494 1.00531 0.93473 1.21102 0.93701 0.98620 0.98299 1.21136 0.94805 1.00768 0.97597 1.21162 0.99746 1.00138 0.92735 1.21137 0.93816 1.00769 0.98587 1.21103 0.94866 0.98657 0.97115 0.94846 0.91487 0.92077 0.92211 0.92560 0.88758 0.93720 0.93651 0.89303 0.92487 0.93190 0.93042 0.92720 0.92717 0.85898 0.86062 0.86230 0.86065 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.12 8.85 59.85 0.53 3.65 16 2 N -0.44 -11.22 3.02 -122.19 -0.37 -11.59 16 3 C -0.34 -8.42 6.81 -14.94 -0.10 -8.52 16 4 H 0.12 2.84 3.00 -52.48 -0.16 2.68 16 5 C 0.03 0.80 5.41 -17.47 -0.09 0.71 16 6 N -0.87 -22.55 9.53 55.50 0.53 -22.02 16 7 Si 0.92 19.14 29.56 -169.99 -5.02 14.11 16 8 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 C 0.46 11.32 6.46 -10.98 -0.07 11.25 16 12 O -0.62 -16.71 15.34 5.54 0.09 -16.62 16 13 C -0.06 -1.15 0.58 -155.66 -0.09 -1.24 16 14 C -0.15 -2.95 7.84 37.16 0.29 -2.66 16 15 C -0.15 -2.84 8.02 37.16 0.30 -2.54 16 16 C 0.09 1.71 4.08 37.16 0.15 1.86 16 17 O -0.38 -6.30 9.10 -35.23 -0.32 -6.62 16 18 C 0.10 1.36 6.06 36.01 0.22 1.58 16 19 C -0.08 -1.03 5.51 -104.62 -0.58 -1.61 16 20 C -0.10 -1.15 9.70 -39.59 -0.38 -1.53 16 21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 25 H 0.03 0.83 6.95 -51.93 -0.36 0.47 16 26 H 0.07 1.76 7.01 -51.93 -0.36 1.39 16 27 H 0.06 1.57 7.12 -51.93 -0.37 1.20 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 30 H 0.09 1.97 4.72 -51.93 -0.25 1.73 16 31 H 0.04 0.85 8.12 -51.92 -0.42 0.43 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.80 4.87 -51.92 -0.25 1.55 16 34 H 0.06 1.01 7.58 -51.93 -0.39 0.61 16 35 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 36 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 37 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -29.01 343.46 -7.66 -36.67 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.33 Total: 6.35 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.41 Total: -5.46 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.16 Total: -33.61 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.24 Total: -23.24 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.01 -7.66 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282015239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.145 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds