Wall clock time and date at job start Tue Mar 31 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37094 * 119.99733 * 2 1 4 4 H 1.08007 * 119.99696 * 183.14208 * 3 2 1 5 5 C 1.38946 * 120.00406 * 3.15003 * 3 2 1 6 6 N 1.31414 * 119.99649 * 7.21212 * 5 3 2 7 7 Si 1.86800 * 120.00200 * 187.21469 * 5 3 2 8 8 H 1.48495 * 109.47117 * 59.99589 * 7 5 3 9 9 H 1.48495 * 109.47091 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46916 * 299.99679 * 7 5 3 11 11 C 1.34774 * 119.99836 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00228 * 354.69322 * 11 2 1 13 13 C 1.50703 * 119.99879 * 174.69353 * 11 2 1 14 14 C 1.53000 * 109.46939 * 62.33963 * 13 11 2 15 15 C 1.52996 * 109.47326 * 302.33849 * 13 11 2 16 16 C 1.52999 * 109.46837 * 182.33675 * 13 11 2 17 17 O 1.42901 * 109.46836 * 180.02562 * 16 13 11 18 18 C 1.42906 * 113.99988 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.38226 * 119.99934 * 90.00527 * 19 18 17 21 21 C 1.38237 * 119.99836 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00191 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00050 * 0.27835 * 22 21 20 24 24 C 1.38238 * 119.99463 * 359.51056 * 23 22 21 25 25 H 1.08998 * 109.46730 * 174.46535 * 1 2 3 26 26 H 1.09004 * 109.46790 * 294.46000 * 1 2 3 27 27 H 1.08997 * 109.47287 * 54.46574 * 1 2 3 28 28 H 0.97001 * 119.99356 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.47137 * 189.62720 * 14 13 11 30 30 H 1.09001 * 109.47159 * 309.63161 * 14 13 11 31 31 H 1.09008 * 109.47107 * 69.63468 * 14 13 11 32 32 H 1.08999 * 109.47084 * 303.55216 * 15 13 11 33 33 H 1.09008 * 109.46832 * 63.54318 * 15 13 11 34 34 H 1.08994 * 109.47208 * 183.54284 * 15 13 11 35 35 H 1.08998 * 109.46994 * 60.00559 * 16 13 11 36 36 H 1.08991 * 109.47710 * 299.99910 * 16 13 11 37 37 H 1.09001 * 109.47105 * 60.00463 * 18 17 16 38 38 H 1.08999 * 109.47177 * 300.00161 * 18 17 16 39 39 H 1.07998 * 120.00374 * 359.96764 * 20 19 18 40 40 H 1.07997 * 120.00057 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.00359 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00195 * 179.72602 * 23 22 21 43 43 H 1.07996 * 119.99809 * 180.27890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2293 1.1880 -0.0513 5 6 1.4574 2.3897 0.0661 6 7 0.1593 2.3894 0.2711 7 14 2.3706 4.0066 -0.1364 8 1 3.0245 4.0423 -1.4691 9 1 1.4108 5.1344 -0.0261 10 1 3.4024 4.1286 0.9247 11 6 2.1389 -1.1672 -0.0005 12 8 1.5363 -2.2155 0.0962 13 6 3.6411 -1.1700 -0.1212 14 6 4.2505 -0.4434 1.0795 15 6 4.0505 -0.4559 -1.4109 16 6 4.1473 -2.6134 -0.1546 17 8 5.5718 -2.6160 -0.2685 18 6 6.1493 -3.9225 -0.3088 19 6 7.6471 -3.8062 -0.4284 20 6 8.4289 -3.7478 0.7100 21 6 9.8028 -3.6417 0.6003 22 6 10.3949 -3.5943 -0.6479 23 6 9.6126 -3.6474 -1.7865 24 6 8.2391 -3.7580 -1.6767 25 1 -0.3633 -1.0229 -0.0991 26 1 -0.3633 0.4255 0.9355 27 1 -0.3634 0.5972 -0.8363 28 1 -0.3245 3.2289 0.3176 29 1 5.3170 -0.2945 0.9110 30 1 3.7638 0.5239 1.2042 31 1 4.1049 -1.0421 1.9787 32 1 3.5655 -0.9353 -2.2613 33 1 3.7449 0.5892 -1.3603 34 1 5.1324 -0.5127 -1.5300 35 1 3.7132 -3.1309 -1.0100 36 1 3.8558 -3.1221 0.7641 37 1 5.7570 -4.4668 -1.1679 38 1 5.8988 -4.4589 0.6064 39 1 7.9664 -3.7851 1.6852 40 1 10.4136 -3.5957 1.4897 41 1 11.4683 -3.5118 -0.7337 42 1 10.0749 -3.6060 -2.7617 43 1 7.6283 -3.8040 -2.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282015239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:54 Heat of formation + Delta-G solvation = -50.385679 kcal Electronic energy + Delta-G solvation = -23506.138641 eV Core-core repulsion = 20130.797793 eV Total energy + Delta-G solvation = -3375.340848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17792 -40.20822 -38.63940 -36.83782 -35.72829 -33.33546 -32.65363 -31.76773 -28.66785 -28.08053 -27.43118 -26.79973 -26.18968 -23.44973 -22.57969 -22.21423 -20.50096 -19.15129 -17.91316 -17.54949 -17.00881 -16.95626 -16.43727 -16.05232 -15.99927 -15.80348 -15.54275 -15.07038 -14.63277 -14.35746 -14.26358 -14.18387 -13.60780 -13.52045 -13.34114 -13.25126 -13.11966 -12.90420 -12.75231 -12.53875 -12.46616 -12.16679 -12.03502 -11.93448 -11.80711 -11.79812 -11.03838 -10.97276 -10.57799 -10.15967 -9.89299 -9.79862 -9.73408 -8.19858 -5.84058 0.36139 0.52381 1.45478 1.49774 1.58830 2.00469 2.27413 2.48934 2.96035 3.18541 3.34397 3.81474 3.92437 3.99426 4.01894 4.16099 4.18568 4.31845 4.35291 4.42892 4.50447 4.59048 4.68689 4.69429 4.79123 4.82658 4.96245 5.01653 5.05227 5.09411 5.15115 5.18153 5.24441 5.32699 5.42752 5.47233 5.57287 5.62831 5.66037 5.70736 5.79533 6.11711 6.21346 6.43687 7.12062 7.58943 7.97439 8.75313 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003697 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.758701 B = 7571.405362 C = 8351.055944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.451 5.451 3 C -0.354 4.354 4 H 0.142 0.858 5 C -0.013 4.013 6 N -0.904 5.904 7 Si 0.987 3.013 8 H -0.262 1.262 9 H -0.286 1.286 10 H -0.261 1.261 11 C 0.447 3.553 12 O -0.649 6.649 13 C -0.055 4.055 14 C -0.142 4.142 15 C -0.137 4.137 16 C 0.105 3.895 17 O -0.382 6.382 18 C 0.097 3.903 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.114 4.114 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.405 -7.230 -2.081 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.167 5.167 3 C -0.480 4.480 4 H 0.159 0.841 5 C -0.214 4.214 6 N -0.544 5.544 7 Si 0.810 3.190 8 H -0.187 1.187 9 H -0.211 1.211 10 H -0.185 1.185 11 C 0.237 3.763 12 O -0.540 6.540 13 C -0.058 4.058 14 C -0.200 4.200 15 C -0.194 4.194 16 C 0.028 3.972 17 O -0.302 6.302 18 C 0.021 3.979 19 C -0.103 4.103 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.132 4.132 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.014 -7.376 -2.023 19.570 hybrid contribution -0.749 0.480 0.045 0.891 sum 17.265 -6.897 -1.978 18.696 Atomic orbital electron populations 1.21302 0.80580 0.96639 1.02211 1.43877 1.06064 1.05590 1.61153 1.20744 0.94368 0.82430 1.50471 0.84100 1.26245 0.96479 1.02919 0.95708 1.70337 1.08461 1.28057 1.47551 0.85067 0.77870 0.76398 0.79701 1.18688 1.21126 1.18499 1.20420 0.90184 0.83002 0.82724 1.90469 1.71287 1.32682 1.59567 1.20264 0.90520 0.95749 0.99273 1.22011 1.01352 1.01527 0.95061 1.21948 1.01714 1.01823 0.93943 1.21946 0.80237 0.95265 0.99792 1.87875 1.19406 1.27949 1.94991 1.21423 0.90099 0.84968 1.01431 1.19716 0.93771 1.02424 0.94419 1.21287 0.94607 0.99087 0.98241 1.21456 0.94419 0.99977 0.98899 1.21554 1.01217 0.98706 0.92289 1.21461 0.93310 0.99954 1.00014 1.21292 0.95880 0.99078 0.96941 0.95245 0.92787 0.92839 0.92206 0.90463 0.90179 0.93846 0.94099 0.90227 0.90444 0.93889 0.93922 0.91977 0.92057 0.85549 0.83874 0.83523 0.83845 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.11 8.85 127.77 1.13 8.24 16 2 N -0.45 -23.37 3.02 -658.87 -1.99 -25.36 16 3 C -0.35 -17.36 6.81 84.04 0.57 -16.79 16 4 H 0.14 6.30 3.00 -2.91 -0.01 6.30 16 5 C -0.01 -0.62 5.41 84.93 0.46 -0.16 16 6 N -0.90 -47.09 9.53 21.66 0.21 -46.88 16 7 Si 0.99 38.32 29.56 68.60 2.03 40.35 16 8 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 9 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 C 0.45 22.28 6.46 87.66 0.57 22.85 16 12 O -0.65 -35.70 15.34 -3.08 -0.05 -35.75 16 13 C -0.06 -2.23 0.58 -52.93 -0.03 -2.26 16 14 C -0.14 -5.36 7.84 71.98 0.56 -4.79 16 15 C -0.14 -5.10 8.02 71.98 0.58 -4.53 16 16 C 0.10 3.85 4.08 71.98 0.29 4.15 16 17 O -0.38 -12.29 9.10 -148.98 -1.36 -13.64 16 18 C 0.10 2.51 6.06 71.24 0.43 2.95 16 19 C -0.10 -2.47 5.51 -19.87 -0.11 -2.58 16 20 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 22 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.11 -2.44 9.70 22.27 0.22 -2.23 16 25 H 0.03 1.51 6.95 -2.39 -0.02 1.50 16 26 H 0.05 2.93 7.01 -2.38 -0.02 2.91 16 27 H 0.05 2.83 7.12 -2.39 -0.02 2.81 16 28 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 29 H 0.08 2.57 7.95 -2.39 -0.02 2.55 16 30 H 0.08 3.26 4.72 -2.39 -0.01 3.25 16 31 H 0.04 1.61 8.12 -2.38 -0.02 1.59 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 3.11 4.87 -2.38 -0.01 3.10 16 34 H 0.08 2.55 7.58 -2.39 -0.02 2.54 16 35 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 36 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.06 1.48 8.08 -2.39 -0.02 1.47 16 39 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -61.67 343.46 5.40 -56.27 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 1.00 Total: 28.25 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.56 Total: -3.23 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.79 Total: -72.24 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.40 Total: -49.39 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -61.67 5.40 -56.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282015239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.885 kcal (2) G-P(sol) polarization free energy of solvation -61.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds