Wall clock time and date at job start Tue Mar 31 2020 07:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09004 * 109.46898 * 55.00461 * 3 2 1 5 5 C 1.52997 * 109.47355 * 295.00059 * 3 2 1 6 6 C 1.53000 * 109.46973 * 174.99802 * 3 2 1 7 7 C 1.53005 * 109.47023 * 185.00404 * 6 3 2 8 8 C 1.50702 * 109.47234 * 180.02562 * 7 6 3 9 9 O 1.21287 * 119.99573 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.39921 * 119.99877 * 174.78368 * 10 8 7 12 12 C 1.38965 * 120.03677 * 326.32563 * 11 10 8 13 13 C 1.38157 * 120.06801 * 180.02562 * 12 11 10 14 14 C 1.38169 * 120.13706 * 359.70116 * 13 12 11 15 15 C 1.38906 * 120.07315 * 0.55189 * 14 13 12 16 16 O 1.35748 * 120.03767 * 179.74321 * 15 14 13 17 17 C 1.34831 * 117.00041 * 173.82629 * 16 15 14 18 18 H 1.07995 * 120.00225 * 354.59241 * 17 16 15 19 19 C 1.38659 * 119.99714 * 174.59445 * 17 16 15 20 20 N 1.31558 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47232 * 120.00013 * 21 19 17 24 24 H 1.48497 * 109.47380 * 240.00174 * 21 19 17 25 25 C 1.38716 * 120.03490 * 146.34353 * 11 10 8 26 26 H 1.09006 * 109.47211 * 59.99598 * 1 2 3 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47260 * 299.99824 * 1 2 3 29 29 H 1.08998 * 109.47260 * 240.00176 * 2 1 3 30 30 H 1.08999 * 109.46846 * 120.00276 * 2 1 3 31 31 H 1.09007 * 109.46969 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.46885 * 299.99510 * 5 3 2 33 33 H 1.09003 * 109.47040 * 60.00077 * 5 3 2 34 34 H 1.08998 * 109.47156 * 65.00352 * 6 3 2 35 35 H 1.09002 * 109.47440 * 305.00127 * 6 3 2 36 36 H 1.08998 * 109.47197 * 59.99973 * 7 6 3 37 37 H 1.09002 * 109.46786 * 300.00124 * 7 6 3 38 38 H 0.96999 * 120.00281 * 354.77895 * 10 8 7 39 39 H 1.08000 * 119.96674 * 0.02638 * 12 11 10 40 40 H 1.08000 * 119.93094 * 179.97438 * 13 12 11 41 41 H 1.08006 * 119.96415 * 180.29447 * 14 13 12 42 42 H 0.96997 * 120.00343 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.06977 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4442 0.1258 7 6 4.0645 2.8849 0.2513 8 6 5.5665 2.8868 0.3745 9 8 6.1771 1.8389 0.3626 10 7 6.2311 4.0528 0.4969 11 6 7.6123 4.0506 0.7208 12 6 8.1927 3.0401 1.4779 13 6 9.5563 3.0376 1.6998 14 6 10.3480 4.0357 1.1648 15 6 9.7733 5.0514 0.4115 16 8 10.5512 6.0344 -0.1094 17 6 9.9521 6.9164 -0.9347 18 1 8.9217 6.7717 -1.2236 19 6 10.6592 8.0093 -1.4126 20 7 11.9147 8.1853 -1.0611 21 14 9.8295 9.2308 -2.5566 22 1 8.4260 8.8092 -2.7972 23 1 9.8410 10.5788 -1.9339 24 1 10.5616 9.2757 -3.8478 25 6 8.4038 5.0573 0.1874 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9983 3.1544 -1.3070 32 1 2.0699 1.5876 -2.1490 33 1 0.5489 2.1253 -1.3968 34 1 4.0029 0.9835 -0.7596 35 1 3.8570 0.8799 1.0114 36 1 3.6264 3.3456 1.1366 37 1 3.7723 3.4493 -0.6343 38 1 5.7521 4.8935 0.4298 39 1 7.5771 2.2560 1.8934 40 1 10.0050 2.2515 2.2889 41 1 11.4144 4.0283 1.3361 42 1 12.4094 8.9496 -1.3957 43 1 7.9550 5.8440 -0.4007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285205929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:10 Heat of formation + Delta-G solvation = -65.037462 kcal Electronic energy + Delta-G solvation = -22328.893038 eV Core-core repulsion = 18952.916842 eV Total energy + Delta-G solvation = -3375.976197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22407 -38.72999 -37.45012 -36.35336 -34.19903 -32.54839 -32.21661 -29.66982 -29.01865 -28.30641 -26.08546 -25.28323 -23.25257 -21.82619 -21.47056 -20.10744 -19.91132 -17.97305 -17.69737 -16.79786 -15.94106 -15.59102 -15.28707 -15.03172 -14.69263 -14.36204 -14.24618 -13.88964 -13.61216 -13.53657 -13.38733 -12.97856 -12.79946 -12.39026 -12.22284 -11.95918 -11.93963 -11.72361 -11.57438 -11.19333 -11.11304 -11.03906 -10.83029 -10.77761 -10.72993 -10.67654 -10.43854 -9.90364 -9.54736 -9.40995 -8.81300 -7.72677 -7.15627 -6.45785 -4.05401 1.97418 2.37435 2.88296 3.11139 3.11354 3.17044 3.28722 3.94967 4.44346 4.53125 4.58975 4.61135 4.84347 4.96826 5.07793 5.10934 5.14221 5.26366 5.27523 5.27662 5.40012 5.50187 5.65537 5.71429 5.74700 5.77669 5.81872 5.83129 5.99011 5.99821 6.08072 6.15958 6.21211 6.26687 6.28655 6.63875 6.97903 6.99901 7.12713 7.30968 7.41908 7.71486 7.81975 7.98676 8.34694 8.99725 9.70474 10.72386 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002975 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.578346 B = 9410.581254 C =10676.781198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.099 4.099 7 C -0.141 4.141 8 C 0.508 3.492 9 O -0.521 6.521 10 N -0.672 5.672 11 C 0.180 3.820 12 C -0.206 4.206 13 C -0.063 4.063 14 C -0.201 4.201 15 C 0.168 3.832 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.257 4.257 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.406 0.594 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.303 -9.633 2.231 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.137 4.137 7 C -0.181 4.181 8 C 0.295 3.705 9 O -0.396 6.396 10 N -0.317 5.317 11 C 0.087 3.913 12 C -0.227 4.227 13 C -0.082 4.082 14 C -0.221 4.221 15 C 0.114 3.886 16 O -0.080 6.080 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.279 4.279 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.241 0.759 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.493 -10.180 2.197 22.100 hybrid contribution -0.684 1.198 -0.661 1.530 sum -20.176 -8.981 1.535 22.138 Atomic orbital electron populations 1.21827 0.96023 1.01444 1.01812 1.21564 0.95687 0.96324 1.02213 1.21201 0.95217 0.96313 0.98435 0.91173 1.21964 1.01206 1.00554 0.97260 1.21403 0.94128 0.94614 1.03594 1.21758 0.91533 1.00422 1.04376 1.20836 0.90213 0.83532 0.75897 1.90718 1.69675 1.31281 1.47968 1.43585 1.07363 1.09268 1.71468 1.17431 0.81637 0.96388 0.95836 1.20529 0.95277 1.01410 1.05438 1.20532 0.92927 0.96852 0.97920 1.20249 0.99942 0.96282 1.05583 1.19093 0.89037 0.89232 0.91282 1.84018 1.35013 1.34180 1.54791 1.21314 0.98133 1.03858 1.23443 0.89238 1.25283 0.95774 0.97257 0.98231 1.70044 1.08238 1.28926 1.42494 0.85658 0.78953 0.79614 0.79229 1.19210 1.20160 1.20139 1.20830 0.93718 1.03446 1.09860 0.92535 0.92965 0.92854 0.91915 0.91928 0.92506 0.92582 0.92576 0.91054 0.91116 0.88825 0.88694 0.75897 0.86419 0.86630 0.86381 0.92069 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.69 2.39 -90.62 -0.22 -0.91 16 4 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.06 8.70 37.16 0.32 -0.74 16 6 C -0.10 -0.95 3.97 -26.73 -0.11 -1.05 16 7 C -0.14 -1.33 5.46 -27.88 -0.15 -1.48 16 8 C 0.51 7.30 7.56 -10.99 -0.08 7.21 16 9 O -0.52 -9.49 13.69 5.55 0.08 -9.42 16 10 N -0.67 -10.07 5.34 -9.88 -0.05 -10.13 16 11 C 0.18 3.48 6.27 -83.72 -0.52 2.96 16 12 C -0.21 -4.01 8.65 -39.34 -0.34 -4.35 16 13 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.36 9.99 -39.36 -0.39 -4.76 16 15 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 16 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 17 C -0.39 -10.86 9.44 30.89 0.29 -10.56 16 18 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 21 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.26 -5.61 9.04 -39.20 -0.35 -5.97 16 26 H 0.06 0.34 6.57 -51.93 -0.34 -0.01 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.37 6.57 -51.92 -0.34 0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.75 6.57 -51.93 -0.34 0.40 16 38 H 0.41 4.73 8.82 -40.82 -0.36 4.37 16 39 H 0.12 2.23 6.44 -52.49 -0.34 1.90 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.13 2.76 5.72 -52.49 -0.30 2.46 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -32.66 352.20 -7.45 -40.11 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.42 Total: 6.37 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.09 Total: -18.05 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.71 Total: -34.56 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.66 -7.45 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285205929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.930 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds