Wall clock time and date at job start Tue Mar 31 2020 07:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09004 * 109.46898 * 55.00461 * 3 2 1 5 5 C 1.52997 * 109.47355 * 295.00059 * 3 2 1 6 6 C 1.53000 * 109.46973 * 174.99802 * 3 2 1 7 7 C 1.53005 * 109.47023 * 185.00404 * 6 3 2 8 8 C 1.50702 * 109.47234 * 180.02562 * 7 6 3 9 9 O 1.21287 * 119.99573 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.39921 * 119.99877 * 174.78368 * 10 8 7 12 12 C 1.38965 * 120.03677 * 326.32563 * 11 10 8 13 13 C 1.38157 * 120.06801 * 180.02562 * 12 11 10 14 14 C 1.38169 * 120.13706 * 359.70116 * 13 12 11 15 15 C 1.38906 * 120.07315 * 0.55189 * 14 13 12 16 16 O 1.35748 * 120.03767 * 179.74321 * 15 14 13 17 17 C 1.34831 * 117.00041 * 173.82629 * 16 15 14 18 18 H 1.07995 * 120.00225 * 354.59241 * 17 16 15 19 19 C 1.38659 * 119.99714 * 174.59445 * 17 16 15 20 20 N 1.31558 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47232 * 120.00013 * 21 19 17 24 24 H 1.48497 * 109.47380 * 240.00174 * 21 19 17 25 25 C 1.38716 * 120.03490 * 146.34353 * 11 10 8 26 26 H 1.09006 * 109.47211 * 59.99598 * 1 2 3 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47260 * 299.99824 * 1 2 3 29 29 H 1.08998 * 109.47260 * 240.00176 * 2 1 3 30 30 H 1.08999 * 109.46846 * 120.00276 * 2 1 3 31 31 H 1.09007 * 109.46969 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.46885 * 299.99510 * 5 3 2 33 33 H 1.09003 * 109.47040 * 60.00077 * 5 3 2 34 34 H 1.08998 * 109.47156 * 65.00352 * 6 3 2 35 35 H 1.09002 * 109.47440 * 305.00127 * 6 3 2 36 36 H 1.08998 * 109.47197 * 59.99973 * 7 6 3 37 37 H 1.09002 * 109.46786 * 300.00124 * 7 6 3 38 38 H 0.96999 * 120.00281 * 354.77895 * 10 8 7 39 39 H 1.08000 * 119.96674 * 0.02638 * 12 11 10 40 40 H 1.08000 * 119.93094 * 179.97438 * 13 12 11 41 41 H 1.08006 * 119.96415 * 180.29447 * 14 13 12 42 42 H 0.96997 * 120.00343 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.06977 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4442 0.1258 7 6 4.0645 2.8849 0.2513 8 6 5.5665 2.8868 0.3745 9 8 6.1771 1.8389 0.3626 10 7 6.2311 4.0528 0.4969 11 6 7.6123 4.0506 0.7208 12 6 8.1927 3.0401 1.4779 13 6 9.5563 3.0376 1.6998 14 6 10.3480 4.0357 1.1648 15 6 9.7733 5.0514 0.4115 16 8 10.5512 6.0344 -0.1094 17 6 9.9521 6.9164 -0.9347 18 1 8.9217 6.7717 -1.2236 19 6 10.6592 8.0093 -1.4126 20 7 11.9147 8.1853 -1.0611 21 14 9.8295 9.2308 -2.5566 22 1 8.4260 8.8092 -2.7972 23 1 9.8410 10.5788 -1.9339 24 1 10.5616 9.2757 -3.8478 25 6 8.4038 5.0573 0.1874 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9983 3.1544 -1.3070 32 1 2.0699 1.5876 -2.1490 33 1 0.5489 2.1253 -1.3968 34 1 4.0029 0.9835 -0.7596 35 1 3.8570 0.8799 1.0114 36 1 3.6264 3.3456 1.1366 37 1 3.7723 3.4493 -0.6343 38 1 5.7521 4.8935 0.4298 39 1 7.5771 2.2560 1.8934 40 1 10.0050 2.2515 2.2889 41 1 11.4144 4.0283 1.3361 42 1 12.4094 8.9496 -1.3957 43 1 7.9550 5.8440 -0.4007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285205929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:10 Heat of formation + Delta-G solvation = -84.705574 kcal Electronic energy + Delta-G solvation = -22329.745911 eV Core-core repulsion = 18952.916842 eV Total energy + Delta-G solvation = -3376.829070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57884 -40.38238 -38.43008 -37.76858 -35.63577 -34.24436 -33.26987 -31.07691 -30.41707 -29.38648 -27.36327 -26.71869 -24.23844 -23.51526 -22.67970 -21.26070 -20.72083 -19.77670 -19.27791 -18.08169 -17.18655 -17.00716 -16.65518 -16.18144 -15.95101 -15.75781 -15.63419 -15.38622 -14.88700 -14.54115 -14.44613 -14.32631 -14.02140 -13.58076 -13.46589 -13.21106 -12.81906 -12.74906 -12.71418 -12.62573 -12.47360 -12.38575 -12.08323 -11.82831 -11.50961 -11.45616 -11.37057 -11.28843 -11.23364 -10.86603 -10.68622 -9.36437 -8.88136 -8.46906 -6.15775 0.39230 0.68019 1.36106 1.44198 1.54435 1.65052 2.08603 2.18100 2.83046 3.16237 3.48079 3.65054 3.81083 3.98205 4.09287 4.17373 4.31589 4.33004 4.41898 4.45221 4.58094 4.61892 4.65909 4.73297 4.76281 4.81104 4.92291 5.01680 5.10004 5.10601 5.13535 5.21517 5.25230 5.27745 5.35896 5.39382 5.48643 5.60147 5.60469 5.65776 5.66277 6.01256 6.16534 6.49295 6.97379 7.16283 7.76927 8.76328 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002975 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.578346 B = 9410.581254 C =10676.781198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.086 4.086 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.129 4.129 8 C 0.506 3.494 9 O -0.562 6.562 10 N -0.665 5.665 11 C 0.187 3.813 12 C -0.201 4.201 13 C -0.052 4.052 14 C -0.216 4.216 15 C 0.133 3.867 16 O -0.226 6.226 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.020 2.980 22 H -0.249 1.249 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.261 4.261 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.424 0.576 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 -9.816 2.247 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.104 4.104 4 H 0.101 0.899 5 C -0.211 4.211 6 C -0.135 4.135 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.439 6.439 10 N -0.311 5.311 11 C 0.092 3.908 12 C -0.222 4.222 13 C -0.071 4.071 14 C -0.235 4.235 15 C 0.082 3.918 16 O -0.133 6.133 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.172 1.172 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.283 4.283 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.262 0.738 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.930 -10.389 2.233 25.273 hybrid contribution 0.257 0.979 -0.530 1.143 sum -22.673 -9.410 1.703 24.607 Atomic orbital electron populations 1.21810 0.95063 1.01778 1.02239 1.21578 0.96524 0.96264 1.01668 1.21149 0.93451 0.96577 0.99272 0.89884 1.21977 1.01836 1.00723 0.96515 1.21369 0.95629 0.94416 1.02088 1.21824 0.87300 1.00879 1.06846 1.21785 0.92087 0.82356 0.74150 1.90703 1.70906 1.32665 1.49668 1.43630 1.05570 1.10792 1.71130 1.17497 0.83719 0.95124 0.94478 1.20851 0.95607 1.01252 1.04501 1.20923 0.92755 0.96528 0.96884 1.20476 1.00538 0.96593 1.05927 1.19625 0.90320 0.89356 0.92496 1.83984 1.36822 1.35851 1.56606 1.21828 0.98830 1.04203 1.23947 0.88058 1.26610 0.96405 0.99136 0.99917 1.70191 1.10320 1.30280 1.44963 0.84516 0.78556 0.76541 0.76502 1.17176 1.19277 1.19643 1.20868 0.93052 1.04293 1.10090 0.92142 0.92778 0.92334 0.92681 0.92370 0.91718 0.93442 0.91653 0.93010 0.92398 0.85763 0.86345 0.73800 0.85272 0.82911 0.86302 0.91818 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.12 -1.56 5.40 30.59 0.17 -1.40 16 3 C -0.09 -1.04 2.39 -10.80 -0.03 -1.07 16 4 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 5 C -0.15 -1.69 8.70 71.98 0.63 -1.06 16 6 C -0.10 -1.64 3.97 30.60 0.12 -1.52 16 7 C -0.13 -1.98 5.46 29.85 0.16 -1.82 16 8 C 0.51 13.28 7.56 87.66 0.66 13.94 16 9 O -0.56 -19.56 13.69 -3.05 -0.04 -19.61 16 10 N -0.67 -18.30 5.34 -303.56 -1.62 -19.92 16 11 C 0.19 6.95 6.27 38.14 0.24 7.19 16 12 C -0.20 -7.48 8.65 22.42 0.19 -7.28 16 13 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 14 C -0.22 -9.49 9.99 22.41 0.22 -9.27 16 15 C 0.13 6.72 6.64 22.56 0.15 6.87 16 16 O -0.23 -13.57 9.76 -22.73 -0.22 -13.79 16 17 C -0.41 -23.63 9.44 67.92 0.64 -22.99 16 18 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 20 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 21 Si 1.02 41.91 29.55 68.60 2.03 43.94 16 22 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 C -0.26 -11.43 9.04 22.51 0.20 -11.23 16 26 H 0.06 0.57 6.57 -2.38 -0.02 0.56 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.61 6.57 -2.38 -0.02 0.59 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.61 6.57 -2.39 -0.02 0.60 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.35 6.57 -2.39 -0.02 1.33 16 38 H 0.42 8.60 8.82 -92.71 -0.82 7.78 16 39 H 0.13 4.58 6.44 -2.91 -0.02 4.57 16 40 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 42 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.13 5.54 5.72 -2.91 -0.02 5.52 16 Total: -1.00 -74.53 352.20 5.39 -69.15 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.20 Total: 28.94 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.75 Total: -33.03 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.32 Total: -75.60 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.26 Total: -33.40 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -74.53 5.39 -69.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285205929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.557 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds