Wall clock time and date at job start Tue Mar 31 2020 07:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 H 1.08997 * 109.47205 * 55.00421 * 3 2 1 5 5 N 1.46496 * 109.47468 * 294.99668 * 3 2 1 6 6 C 1.34774 * 119.99544 * 85.00158 * 5 3 2 7 7 O 1.21279 * 120.00472 * 0.02562 * 6 5 3 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 3 9 9 C 1.52997 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99493 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47162 * 90.00212 * 14 12 10 16 16 H 1.48498 * 109.46805 * 210.00384 * 14 12 10 17 17 H 1.48494 * 109.47357 * 330.00050 * 14 12 10 18 18 C 1.50707 * 109.47004 * 174.99860 * 3 2 1 19 19 C 1.38270 * 119.94274 * 79.72934 * 18 3 2 20 20 C 1.38143 * 120.05420 * 179.73036 * 19 18 3 21 21 C 1.38728 * 119.94457 * 0.54077 * 20 19 18 22 22 O 1.35896 * 120.06025 * 179.75239 * 21 20 19 23 23 C 1.42907 * 116.99636 * 359.97438 * 22 21 20 24 24 C 1.38738 * 119.88974 * 359.73363 * 21 20 19 25 25 C 1.38147 * 119.94218 * 359.97438 * 24 21 20 26 26 H 1.08997 * 109.46888 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.46698 * 59.99888 * 1 2 3 28 28 H 1.08994 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47051 * 239.99999 * 2 1 3 30 30 H 1.09004 * 109.47015 * 120.00555 * 2 1 3 31 31 H 0.96994 * 120.00700 * 265.00278 * 5 3 2 32 32 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 33 33 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 34 34 H 1.09001 * 109.46832 * 299.99686 * 9 8 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 8 6 36 36 H 0.96999 * 119.99718 * 179.97438 * 13 12 10 37 37 H 1.07999 * 119.96949 * 359.97438 * 19 18 3 38 38 H 1.08001 * 120.02634 * 180.27476 * 20 19 18 39 39 H 1.08993 * 109.47329 * 300.00185 * 23 22 21 40 40 H 1.09007 * 109.46894 * 60.00437 * 23 22 21 41 41 H 1.08999 * 109.46657 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.03013 * 179.97438 * 24 21 20 43 43 H 1.07996 * 119.97409 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6526 2.0975 -1.2518 6 6 0.4354 2.6644 -1.3669 7 8 -0.3391 2.6328 -0.4341 8 6 0.0365 3.3378 -2.6548 9 6 -1.3822 3.8948 -2.5210 10 6 -1.7808 4.5687 -3.8086 11 1 -1.0914 4.5965 -4.6395 12 6 -3.0261 5.1489 -3.9264 13 7 -3.8657 5.1145 -2.9148 14 14 -3.5204 5.9835 -5.5227 15 1 -4.1710 4.9935 -6.4181 16 1 -4.4707 7.0867 -5.2309 17 1 -2.3124 6.5340 -6.1882 18 6 3.5420 1.4442 0.1239 19 6 4.3265 1.1971 -0.9876 20 6 5.7035 1.2037 -0.8779 21 6 6.2991 1.4472 0.3511 22 8 7.6534 1.4492 0.4628 23 6 8.4028 1.1924 -0.7266 24 6 5.5097 1.6892 1.4661 25 6 4.1331 1.6875 1.3499 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2720 2.1231 -1.9977 32 1 0.7279 4.1531 -2.8678 33 1 0.0675 2.6132 -3.4685 34 1 -2.0739 3.0798 -2.3077 35 1 -1.4128 4.6196 -1.7073 36 1 -4.7416 5.5230 -2.9975 37 1 3.8622 1.0028 -1.9432 38 1 6.3159 1.0151 -1.7473 39 1 8.1423 0.2077 -1.1146 40 1 8.1694 1.9509 -1.4739 41 1 9.4682 1.2233 -0.4985 42 1 5.9709 1.8786 2.4241 43 1 3.5182 1.8762 2.2174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291050781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:43 Heat of formation + Delta-G solvation = -67.549378 kcal Electronic energy + Delta-G solvation = -22675.426189 eV Core-core repulsion = 19299.341067 eV Total energy + Delta-G solvation = -3376.085121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57394 -39.49124 -37.88199 -35.30151 -33.42072 -32.21720 -31.33506 -30.76015 -30.43716 -27.84869 -26.14729 -25.06755 -23.07131 -22.17323 -21.73686 -20.32943 -19.62438 -18.46271 -17.01403 -16.55701 -16.17333 -16.05024 -15.57678 -15.24519 -15.14549 -14.42414 -14.38444 -13.99549 -13.74002 -13.58236 -13.27509 -13.01806 -12.68166 -12.47469 -12.23460 -12.14790 -11.95857 -11.49454 -11.17632 -11.12125 -11.08643 -10.97385 -10.91240 -10.65497 -10.57878 -9.91967 -9.62646 -9.25236 -9.14377 -8.98720 -8.70519 -8.32572 -8.30032 -5.94664 -3.98782 1.09244 1.14224 2.96025 3.29983 3.34088 3.39748 3.41902 3.44263 3.68873 4.48831 4.48883 4.53041 4.61589 4.75533 4.78993 5.06933 5.10605 5.15366 5.22105 5.25677 5.36287 5.40319 5.49345 5.63942 5.73541 5.87252 5.96724 6.00316 6.09425 6.13832 6.25214 6.27347 6.30184 6.39972 6.49228 6.69670 6.84516 6.92411 7.08923 7.76261 7.89037 7.93625 8.09249 8.41001 8.83835 9.10062 9.64578 11.16266 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.002913 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.168189 B = 9609.046785 C =10391.676055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.187 3.813 4 H 0.094 0.906 5 N -0.738 5.738 6 C 0.511 3.489 7 O -0.528 6.528 8 C -0.131 4.131 9 C 0.038 3.962 10 C -0.527 4.527 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.204 4.204 21 C 0.122 3.878 22 O -0.320 6.320 23 C 0.027 3.973 24 C -0.148 4.148 25 C -0.069 4.069 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.261 -10.990 5.515 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.083 3.917 4 H 0.112 0.888 5 N -0.392 5.392 6 C 0.299 3.701 7 O -0.403 6.403 8 C -0.171 4.171 9 C 0.001 3.999 10 C -0.565 4.565 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.122 4.122 19 C -0.091 4.091 20 C -0.223 4.223 21 C 0.077 3.923 22 O -0.233 6.233 23 C -0.068 4.068 24 C -0.167 4.167 25 C -0.087 4.087 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.609 -10.909 6.421 25.911 hybrid contribution 0.100 0.395 -1.570 1.622 sum 22.709 -10.513 4.851 25.490 Atomic orbital electron populations 1.21831 0.94296 1.00441 1.03856 1.21931 0.97272 0.95346 1.01795 1.19746 0.88930 0.93849 0.89223 0.88806 1.46353 1.17711 1.59547 1.15637 1.21472 0.80256 0.77151 0.91194 1.90673 1.50789 1.57872 1.40928 1.21874 1.03007 0.99613 0.92609 1.18882 0.87647 0.96395 0.96999 1.21231 0.99987 1.36158 0.99131 0.92681 1.25024 0.96651 0.96321 0.96396 1.69996 1.07614 1.44740 1.30468 0.86602 0.78402 0.79220 0.83791 1.20695 1.21234 1.19909 1.19945 0.95288 1.02991 0.93928 1.20745 0.92661 0.97303 0.98405 1.21198 0.95922 1.08360 0.96798 1.19053 0.82474 0.96617 0.94157 1.86065 1.15328 1.86469 1.35443 1.23057 0.96129 1.00733 0.86872 1.20410 0.92772 1.05906 0.97595 1.20859 0.93582 0.96981 0.97282 0.92073 0.91736 0.93805 0.92099 0.91586 0.77125 0.90391 0.90410 0.95824 0.95829 0.92976 0.85667 0.85408 0.92630 0.92550 0.88289 0.85107 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.52 37.16 0.32 -1.85 16 2 C -0.12 -1.50 5.58 -26.73 -0.15 -1.65 16 3 C 0.19 2.38 2.45 -69.08 -0.17 2.21 16 4 H 0.09 1.36 7.43 -51.93 -0.39 0.97 16 5 N -0.74 -10.30 4.98 -54.93 -0.27 -10.58 16 6 C 0.51 9.56 6.40 -10.98 -0.07 9.49 16 7 O -0.53 -11.80 13.12 5.56 0.07 -11.73 16 8 C -0.13 -2.65 5.64 -27.88 -0.16 -2.80 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.12 -1.31 4.96 -104.60 -0.52 -1.83 16 19 C -0.07 -0.71 9.04 -39.60 -0.36 -1.07 16 20 C -0.20 -1.88 9.04 -39.44 -0.36 -2.24 16 21 C 0.12 1.24 6.69 -39.22 -0.26 0.97 16 22 O -0.32 -3.04 10.50 -19.41 -0.20 -3.24 16 23 C 0.03 0.16 9.81 101.05 0.99 1.15 16 24 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 25 C -0.07 -0.70 9.66 -39.61 -0.38 -1.08 16 26 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 27 H 0.06 1.13 5.65 -51.93 -0.29 0.83 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.39 4.49 6.88 -40.82 -0.28 4.21 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 37 H 0.13 1.04 6.93 -52.49 -0.36 0.67 16 38 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 39 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 40 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -34.02 352.90 -8.03 -42.05 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.62 Total: 1.58 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.04 Total: -13.37 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.46 Total: -37.33 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.13 Total: -14.97 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.02 -8.03 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291050781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.499 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds