Wall clock time and date at job start Tue Mar 31 2020 07:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 H 1.08997 * 109.47205 * 55.00421 * 3 2 1 5 5 N 1.46496 * 109.47468 * 294.99668 * 3 2 1 6 6 C 1.34774 * 119.99544 * 85.00158 * 5 3 2 7 7 O 1.21279 * 120.00472 * 0.02562 * 6 5 3 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 3 9 9 C 1.52997 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99493 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47162 * 90.00212 * 14 12 10 16 16 H 1.48498 * 109.46805 * 210.00384 * 14 12 10 17 17 H 1.48494 * 109.47357 * 330.00050 * 14 12 10 18 18 C 1.50707 * 109.47004 * 174.99860 * 3 2 1 19 19 C 1.38270 * 119.94274 * 79.72934 * 18 3 2 20 20 C 1.38143 * 120.05420 * 179.73036 * 19 18 3 21 21 C 1.38728 * 119.94457 * 0.54077 * 20 19 18 22 22 O 1.35896 * 120.06025 * 179.75239 * 21 20 19 23 23 C 1.42907 * 116.99636 * 359.97438 * 22 21 20 24 24 C 1.38738 * 119.88974 * 359.73363 * 21 20 19 25 25 C 1.38147 * 119.94218 * 359.97438 * 24 21 20 26 26 H 1.08997 * 109.46888 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.46698 * 59.99888 * 1 2 3 28 28 H 1.08994 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47051 * 239.99999 * 2 1 3 30 30 H 1.09004 * 109.47015 * 120.00555 * 2 1 3 31 31 H 0.96994 * 120.00700 * 265.00278 * 5 3 2 32 32 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 33 33 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 34 34 H 1.09001 * 109.46832 * 299.99686 * 9 8 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 8 6 36 36 H 0.96999 * 119.99718 * 179.97438 * 13 12 10 37 37 H 1.07999 * 119.96949 * 359.97438 * 19 18 3 38 38 H 1.08001 * 120.02634 * 180.27476 * 20 19 18 39 39 H 1.08993 * 109.47329 * 300.00185 * 23 22 21 40 40 H 1.09007 * 109.46894 * 60.00437 * 23 22 21 41 41 H 1.08999 * 109.46657 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.03013 * 179.97438 * 24 21 20 43 43 H 1.07996 * 119.97409 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6526 2.0975 -1.2518 6 6 0.4354 2.6644 -1.3669 7 8 -0.3391 2.6328 -0.4341 8 6 0.0365 3.3378 -2.6548 9 6 -1.3822 3.8948 -2.5210 10 6 -1.7808 4.5687 -3.8086 11 1 -1.0914 4.5965 -4.6395 12 6 -3.0261 5.1489 -3.9264 13 7 -3.8657 5.1145 -2.9148 14 14 -3.5204 5.9835 -5.5227 15 1 -4.1710 4.9935 -6.4181 16 1 -4.4707 7.0867 -5.2309 17 1 -2.3124 6.5340 -6.1882 18 6 3.5420 1.4442 0.1239 19 6 4.3265 1.1971 -0.9876 20 6 5.7035 1.2037 -0.8779 21 6 6.2991 1.4472 0.3511 22 8 7.6534 1.4492 0.4628 23 6 8.4028 1.1924 -0.7266 24 6 5.5097 1.6892 1.4661 25 6 4.1331 1.6875 1.3499 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2720 2.1231 -1.9977 32 1 0.7279 4.1531 -2.8678 33 1 0.0675 2.6132 -3.4685 34 1 -2.0739 3.0798 -2.3077 35 1 -1.4128 4.6196 -1.7073 36 1 -4.7416 5.5230 -2.9975 37 1 3.8622 1.0028 -1.9432 38 1 6.3159 1.0151 -1.7473 39 1 8.1423 0.2077 -1.1146 40 1 8.1694 1.9509 -1.4739 41 1 9.4682 1.2233 -0.4985 42 1 5.9709 1.8786 2.4241 43 1 3.5182 1.8762 2.2174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291050781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:43 Heat of formation + Delta-G solvation = -89.345099 kcal Electronic energy + Delta-G solvation = -22676.371322 eV Core-core repulsion = 19299.341067 eV Total energy + Delta-G solvation = -3377.030255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44402 -40.66192 -38.79882 -36.44409 -35.49501 -33.63347 -32.57353 -32.03047 -31.35898 -28.53238 -27.73463 -26.37537 -23.99565 -23.63096 -22.82910 -21.46006 -21.07161 -19.16872 -18.78925 -17.62682 -17.54232 -16.78484 -16.71189 -16.60429 -16.39676 -16.02505 -15.31349 -15.12854 -14.81602 -14.63848 -14.33224 -14.23581 -13.83678 -13.81253 -13.59426 -13.21067 -13.18888 -12.80778 -12.77686 -12.53765 -12.46184 -12.06797 -11.90303 -11.85577 -11.80258 -11.66183 -11.59542 -11.27813 -10.62327 -10.55591 -10.00430 -9.94444 -9.09227 -8.16973 -6.30678 0.35777 0.38183 1.42230 1.44934 1.55791 1.81014 2.28982 2.39039 2.45976 2.78221 3.16005 3.60711 3.81694 3.95536 4.07310 4.16217 4.19858 4.31954 4.40541 4.42210 4.45843 4.52931 4.55533 4.58605 4.68224 4.76054 4.78261 4.93581 5.01970 5.06801 5.08623 5.20092 5.25381 5.35989 5.46793 5.48505 5.52434 5.66690 5.73033 5.77130 5.87793 6.19776 6.44525 6.66943 6.88189 7.39002 7.43835 8.95585 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.002913 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.168189 B = 9609.046785 C =10391.676055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.191 3.809 4 H 0.071 0.929 5 N -0.715 5.715 6 C 0.513 3.487 7 O -0.573 6.573 8 C -0.121 4.121 9 C 0.045 3.955 10 C -0.543 4.543 11 H 0.074 0.926 12 C -0.007 4.007 13 N -0.937 5.937 14 Si 0.972 3.028 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.256 1.256 18 C -0.132 4.132 19 C -0.073 4.073 20 C -0.204 4.204 21 C 0.115 3.885 22 O -0.336 6.336 23 C 0.018 3.982 24 C -0.159 4.159 25 C -0.074 4.074 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.099 0.901 33 H 0.102 0.898 34 H -0.017 1.017 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.940 -11.572 3.402 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.086 3.914 4 H 0.089 0.911 5 N -0.369 5.369 6 C 0.302 3.698 7 O -0.452 6.452 8 C -0.161 4.161 9 C 0.007 3.993 10 C -0.581 4.581 11 H 0.093 0.907 12 C -0.205 4.205 13 N -0.577 5.577 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.179 1.179 18 C -0.133 4.133 19 C -0.092 4.092 20 C -0.222 4.222 21 C 0.070 3.930 22 O -0.250 6.250 23 C -0.077 4.077 24 C -0.178 4.178 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.002 0.998 35 H 0.000 1.000 36 H 0.071 0.929 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.365 -11.514 4.283 28.183 hybrid contribution -0.637 0.538 -0.856 1.195 sum 24.728 -10.975 3.427 27.270 Atomic orbital electron populations 1.21765 0.96533 1.00565 1.01266 1.21886 0.94988 0.95127 1.03517 1.19730 0.90432 0.93751 0.87455 0.91106 1.46060 1.16133 1.57869 1.16816 1.21151 0.81305 0.77292 0.90076 1.90669 1.52540 1.59851 1.42156 1.21640 0.99190 1.00913 0.94353 1.18654 0.91144 0.94149 0.95324 1.21728 1.00555 1.35847 0.99929 0.90748 1.26130 0.96728 0.97098 1.00504 1.70176 1.08189 1.46033 1.33336 0.85340 0.78469 0.77906 0.78653 1.19688 1.21228 1.17939 1.19757 0.93756 1.04880 0.94869 1.20932 0.92940 0.96714 0.98575 1.21438 0.95895 1.07569 0.97305 1.19264 0.83016 0.96232 0.94507 1.86050 1.15093 1.86395 1.37465 1.23344 0.96728 1.01558 0.86030 1.20581 0.92744 1.06102 0.98341 1.20975 0.93944 0.96868 0.97470 0.94236 0.94791 0.92231 0.90430 0.89669 0.75151 0.88244 0.87992 0.99847 1.00008 0.92903 0.84000 0.83093 0.91537 0.91790 0.86489 0.84251 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 8.52 71.98 0.61 -3.70 16 2 C -0.12 -2.67 5.58 30.59 0.17 -2.50 16 3 C 0.19 4.71 2.45 44.25 0.11 4.82 16 4 H 0.07 2.11 7.43 -2.39 -0.02 2.09 16 5 N -0.71 -19.19 4.98 -446.10 -2.22 -21.41 16 6 C 0.51 19.49 6.40 87.66 0.56 20.05 16 7 O -0.57 -27.07 13.12 -3.02 -0.04 -27.11 16 8 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 9 C 0.04 2.51 4.26 29.85 0.13 2.64 16 10 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 11 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 12 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 13 N -0.94 -59.84 13.29 21.45 0.28 -59.56 16 14 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 C -0.13 -2.64 4.96 -19.85 -0.10 -2.74 16 19 C -0.07 -1.22 9.04 22.25 0.20 -1.02 16 20 C -0.20 -3.16 9.04 22.36 0.20 -2.95 16 21 C 0.12 2.09 6.69 22.51 0.15 2.24 16 22 O -0.34 -5.69 10.50 -92.38 -0.97 -6.66 16 23 C 0.02 0.15 9.81 113.37 1.11 1.27 16 24 C -0.16 -2.96 9.99 22.37 0.22 -2.73 16 25 C -0.07 -1.43 9.66 22.25 0.22 -1.21 16 26 H 0.04 1.32 7.85 -2.39 -0.02 1.30 16 27 H 0.03 1.21 5.65 -2.39 -0.01 1.20 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.41 8.31 6.88 -92.71 -0.64 7.67 16 32 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 34 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 35 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.14 1.82 6.93 -2.91 -0.02 1.80 16 38 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 39 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 40 H 0.06 0.46 7.66 -2.38 -0.02 0.44 16 41 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.14 2.37 8.03 -2.91 -0.02 2.34 16 Total: -1.00 -77.27 352.90 3.89 -73.38 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.36 Total: 16.14 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.45 Total: -21.32 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.94 Total: -80.97 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.01 Total: -33.77 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -77.27 3.89 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291050781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.970 kcal (2) G-P(sol) polarization free energy of solvation -77.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds