Wall clock time and date at job start Tue Mar 31 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53002 * 109.47050 * 119.99574 * 2 1 3 5 5 O 1.42898 * 109.46950 * 65.00425 * 4 2 1 6 6 C 1.35976 * 116.99955 * 180.02562 * 5 4 2 7 7 C 1.38544 * 120.08430 * 359.94973 * 6 5 4 8 8 C 1.38246 * 120.01772 * 180.02562 * 7 6 5 9 9 C 1.38274 * 120.17768 * 359.97438 * 8 7 6 10 10 C 1.38200 * 120.16286 * 0.02639 * 9 8 7 11 11 C 1.38719 * 119.98453 * 359.97438 * 10 9 8 12 12 N 1.40124 * 120.08650 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00520 * 24.79773 * 12 11 10 14 14 O 1.21294 * 119.99577 * 5.53663 * 13 12 11 15 15 C 1.50703 * 120.00475 * 185.53500 * 13 12 11 16 16 C 1.52999 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46963 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00081 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99654 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99673 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46968 * 89.99958 * 21 19 17 23 23 H 1.48500 * 109.47070 * 210.00014 * 21 19 17 24 24 H 1.48497 * 109.47398 * 330.00004 * 21 19 17 25 25 H 1.09000 * 109.47232 * 60.00595 * 1 2 3 26 26 H 1.09006 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47159 * 300.00138 * 1 2 3 28 28 H 1.08999 * 109.47159 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.47204 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47168 * 299.99786 * 3 2 1 31 31 H 1.08999 * 109.47324 * 59.99963 * 3 2 1 32 32 H 1.08997 * 109.47220 * 305.00618 * 4 2 1 33 33 H 1.09001 * 109.47082 * 185.00270 * 4 2 1 34 34 H 1.08006 * 119.99153 * 0.02562 * 7 6 5 35 35 H 1.07994 * 119.91014 * 180.28139 * 8 7 6 36 36 H 1.07998 * 119.91652 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.00480 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99708 * 204.80228 * 12 11 10 39 39 H 1.09001 * 109.46674 * 300.00184 * 15 13 12 40 40 H 1.09000 * 109.46608 * 59.99947 * 15 13 12 41 41 H 1.08992 * 109.47431 * 300.00338 * 16 15 13 42 42 H 1.09003 * 109.46766 * 59.99913 * 16 15 13 43 43 H 0.97008 * 119.99612 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0399 -2.8858 2.2341 7 6 2.7594 -2.3457 3.2877 8 6 3.1433 -3.1479 4.3461 9 6 2.8108 -4.4900 4.3574 10 6 2.0932 -5.0365 3.3103 11 6 1.7046 -4.2377 2.2448 12 7 0.9765 -4.7894 1.1822 13 6 0.2324 -5.8959 1.3778 14 8 0.1120 -6.3564 2.4935 15 6 -0.4501 -6.5612 0.2104 16 6 -1.2230 -7.7866 0.7022 17 6 -1.9059 -8.4515 -0.4651 18 1 -1.7990 -8.0413 -1.4584 19 6 -2.6673 -9.5835 -0.2649 20 7 -2.7970 -10.0832 0.9447 21 14 -3.5132 -10.4080 -1.7119 22 1 -2.6056 -11.4243 -2.3024 23 1 -4.7593 -11.0680 -1.2463 24 1 -3.8473 -9.3872 -2.7373 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 3.0205 -1.2977 3.2822 35 1 3.7002 -2.7242 5.1686 36 1 3.1132 -5.1130 5.1862 37 1 1.8352 -6.0852 3.3215 38 1 1.0081 -4.3749 0.3058 39 1 -1.1408 -5.8583 -0.2553 40 1 0.2981 -6.8725 -0.5186 41 1 -0.5320 -8.4893 1.1677 42 1 -1.9711 -7.4757 1.4315 43 1 -3.3330 -10.8794 1.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291531154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:27 Heat of formation + Delta-G solvation = -70.350892 kcal Electronic energy + Delta-G solvation = -22668.140487 eV Core-core repulsion = 19291.933882 eV Total energy + Delta-G solvation = -3376.206604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66240 -39.22298 -37.54361 -35.45102 -34.43105 -33.49184 -31.20901 -30.06236 -29.26068 -27.48430 -26.81836 -25.72032 -23.15352 -22.24500 -21.36687 -20.40189 -19.59335 -18.36794 -17.16998 -16.91483 -16.37765 -15.95211 -15.34627 -15.12234 -14.91071 -14.49704 -14.42999 -14.15422 -13.98400 -13.34361 -13.25680 -12.94253 -12.72852 -12.47964 -12.22630 -12.16289 -11.70797 -11.61231 -11.43513 -11.40003 -11.15441 -10.93727 -10.92104 -10.86054 -10.60651 -10.26471 -9.97819 -9.66654 -9.18129 -9.03796 -8.51445 -8.32894 -7.64734 -5.96676 -4.01087 1.35780 1.44684 2.97277 3.11197 3.33579 3.38717 3.41188 3.45312 3.90657 4.41225 4.47184 4.47414 4.71464 4.83688 4.88765 5.05324 5.07480 5.17970 5.24149 5.33223 5.38489 5.44551 5.46679 5.51519 5.58058 5.69565 5.72271 5.88108 5.96692 6.04622 6.13199 6.18004 6.24996 6.30983 6.56631 6.69050 6.85145 6.92709 7.38988 7.73117 7.77310 7.83862 8.05498 8.36723 8.63616 9.06913 9.62536 11.14270 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.003312 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.071796 B = 8452.635506 C = 9957.513210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.067 3.933 5 O -0.315 6.315 6 C 0.090 3.910 7 C -0.191 4.191 8 C -0.111 4.111 9 C -0.133 4.133 10 C -0.101 4.101 11 C 0.136 3.864 12 N -0.674 5.674 13 C 0.509 3.491 14 O -0.515 6.515 15 C -0.129 4.129 16 C 0.037 3.963 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.412 0.588 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 22.412 0.958 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.009 4.009 5 O -0.229 6.229 6 C 0.043 3.957 7 C -0.210 4.210 8 C -0.130 4.130 9 C -0.152 4.152 10 C -0.121 4.121 11 C 0.040 3.960 12 N -0.319 5.319 13 C 0.299 3.701 14 O -0.389 6.389 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.247 0.753 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.770 21.819 1.629 25.334 hybrid contribution -0.320 -0.027 -0.973 1.025 sum 12.449 21.792 0.656 25.106 Atomic orbital electron populations 1.21827 0.94161 1.02873 1.01676 1.21130 0.97128 0.95684 0.97418 1.21781 1.01097 0.94914 1.02501 1.22860 0.99247 0.79643 0.99114 1.85982 1.74765 1.20733 1.41421 1.18644 0.99207 0.88887 0.88926 1.20960 1.04145 1.00360 0.95525 1.20847 1.00419 0.93907 0.97832 1.20998 0.99951 0.95245 0.98992 1.21432 0.96481 1.01531 0.92649 1.17277 0.97868 0.88705 0.92171 1.43791 1.46829 1.29282 1.12039 1.21818 0.77186 0.78817 0.92271 1.90626 1.59896 1.62929 1.25474 1.21907 0.99866 1.00534 0.94536 1.18914 0.94876 0.89829 0.96438 1.21205 1.30522 1.10859 0.94002 0.92550 1.25023 0.96561 0.97138 0.95648 1.69997 1.39975 1.22359 1.20471 0.86582 0.79060 0.79628 0.82631 1.20664 1.21222 1.19867 0.92478 0.91594 0.92776 0.90005 0.92421 0.91705 0.92381 0.92141 0.92226 0.85639 0.86103 0.85706 0.82769 0.75282 0.89904 0.89791 0.95708 0.95707 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.09 37.16 0.34 -0.87 16 2 C -0.10 -0.71 3.16 -90.62 -0.29 -0.99 16 3 C -0.15 -0.81 9.19 37.16 0.34 -0.46 16 4 C 0.07 0.58 4.12 37.16 0.15 0.73 16 5 O -0.31 -3.76 9.09 -19.67 -0.18 -3.94 16 6 C 0.09 1.22 6.70 -39.08 -0.26 0.95 16 7 C -0.19 -2.19 9.04 -39.47 -0.36 -2.55 16 8 C -0.11 -1.26 10.04 -39.57 -0.40 -1.66 16 9 C -0.13 -1.74 10.04 -39.58 -0.40 -2.14 16 10 C -0.10 -1.61 8.72 -39.42 -0.34 -1.96 16 11 C 0.14 2.13 6.45 -83.50 -0.54 1.60 16 12 N -0.67 -10.71 5.29 -9.75 -0.05 -10.76 16 13 C 0.51 9.96 7.64 -10.98 -0.08 9.88 16 14 O -0.52 -11.88 13.15 5.55 0.07 -11.81 16 15 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 17 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.38 13.29 55.43 0.74 -26.65 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 33 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 34 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 2.81 5.79 -52.48 -0.30 2.50 16 38 H 0.41 5.46 8.35 -40.82 -0.34 5.11 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -33.29 357.41 -8.36 -41.66 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.79 Total: 2.49 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.52 Total: -13.02 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.68 Total: -37.41 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.11 Total: -15.75 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.29 -8.36 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291531154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.694 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds