Wall clock time and date at job start Tue Mar 31 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53002 * 109.47050 * 119.99574 * 2 1 3 5 5 O 1.42898 * 109.46950 * 65.00425 * 4 2 1 6 6 C 1.35976 * 116.99955 * 180.02562 * 5 4 2 7 7 C 1.38544 * 120.08430 * 359.94973 * 6 5 4 8 8 C 1.38246 * 120.01772 * 180.02562 * 7 6 5 9 9 C 1.38274 * 120.17768 * 359.97438 * 8 7 6 10 10 C 1.38200 * 120.16286 * 0.02639 * 9 8 7 11 11 C 1.38719 * 119.98453 * 359.97438 * 10 9 8 12 12 N 1.40124 * 120.08650 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00520 * 24.79773 * 12 11 10 14 14 O 1.21294 * 119.99577 * 5.53663 * 13 12 11 15 15 C 1.50703 * 120.00475 * 185.53500 * 13 12 11 16 16 C 1.52999 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46963 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00081 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99654 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99673 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46968 * 89.99958 * 21 19 17 23 23 H 1.48500 * 109.47070 * 210.00014 * 21 19 17 24 24 H 1.48497 * 109.47398 * 330.00004 * 21 19 17 25 25 H 1.09000 * 109.47232 * 60.00595 * 1 2 3 26 26 H 1.09006 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47159 * 300.00138 * 1 2 3 28 28 H 1.08999 * 109.47159 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.47204 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47168 * 299.99786 * 3 2 1 31 31 H 1.08999 * 109.47324 * 59.99963 * 3 2 1 32 32 H 1.08997 * 109.47220 * 305.00618 * 4 2 1 33 33 H 1.09001 * 109.47082 * 185.00270 * 4 2 1 34 34 H 1.08006 * 119.99153 * 0.02562 * 7 6 5 35 35 H 1.07994 * 119.91014 * 180.28139 * 8 7 6 36 36 H 1.07998 * 119.91652 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.00480 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99708 * 204.80228 * 12 11 10 39 39 H 1.09001 * 109.46674 * 300.00184 * 15 13 12 40 40 H 1.09000 * 109.46608 * 59.99947 * 15 13 12 41 41 H 1.08992 * 109.47431 * 300.00338 * 16 15 13 42 42 H 1.09003 * 109.46766 * 59.99913 * 16 15 13 43 43 H 0.97008 * 119.99612 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0399 -2.8858 2.2341 7 6 2.7594 -2.3457 3.2877 8 6 3.1433 -3.1479 4.3461 9 6 2.8108 -4.4900 4.3574 10 6 2.0932 -5.0365 3.3103 11 6 1.7046 -4.2377 2.2448 12 7 0.9765 -4.7894 1.1822 13 6 0.2324 -5.8959 1.3778 14 8 0.1120 -6.3564 2.4935 15 6 -0.4501 -6.5612 0.2104 16 6 -1.2230 -7.7866 0.7022 17 6 -1.9059 -8.4515 -0.4651 18 1 -1.7990 -8.0413 -1.4584 19 6 -2.6673 -9.5835 -0.2649 20 7 -2.7970 -10.0832 0.9447 21 14 -3.5132 -10.4080 -1.7119 22 1 -2.6056 -11.4243 -2.3024 23 1 -4.7593 -11.0680 -1.2463 24 1 -3.8473 -9.3872 -2.7373 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 3.0205 -1.2977 3.2822 35 1 3.7002 -2.7242 5.1686 36 1 3.1132 -5.1130 5.1862 37 1 1.8352 -6.0852 3.3215 38 1 1.0081 -4.3749 0.3058 39 1 -1.1408 -5.8583 -0.2553 40 1 0.2981 -6.8725 -0.5186 41 1 -0.5320 -8.4893 1.1677 42 1 -1.9711 -7.4757 1.4315 43 1 -3.3330 -10.8794 1.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291531154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:27 Heat of formation + Delta-G solvation = -90.689963 kcal Electronic energy + Delta-G solvation = -22669.022455 eV Core-core repulsion = 19291.933882 eV Total energy + Delta-G solvation = -3377.088573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82041 -40.46631 -38.54663 -36.14562 -35.80890 -35.53782 -33.13429 -31.13623 -30.46032 -28.04004 -27.76424 -27.41661 -24.60612 -23.39054 -22.81560 -21.26665 -20.95811 -19.40659 -18.80027 -18.19604 -17.63517 -17.19147 -16.64909 -16.48714 -16.31598 -15.85871 -15.36282 -15.30969 -14.90521 -14.71068 -14.39039 -14.20109 -14.06369 -13.53371 -13.42889 -13.25998 -12.99770 -12.82442 -12.62298 -12.48863 -12.46953 -12.18949 -12.01420 -11.94407 -11.65671 -11.59484 -11.55531 -11.48506 -11.30756 -10.65814 -10.57103 -9.57663 -8.76525 -8.18731 -6.32705 0.26734 0.42186 1.41997 1.44786 1.55739 1.63525 2.01528 2.21576 2.43660 2.83963 3.14454 3.74180 3.84696 3.89200 3.96722 4.07273 4.14501 4.26659 4.39654 4.47535 4.49247 4.51383 4.56188 4.59991 4.69870 4.78234 4.85002 5.00050 5.02216 5.03621 5.16108 5.22605 5.31181 5.39980 5.41895 5.47185 5.51823 5.60453 5.60823 5.83448 5.85976 6.16254 6.42851 6.46467 6.85031 7.18176 7.37414 8.93976 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.003312 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.071796 B = 8452.635506 C = 9957.513210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.141 4.141 4 C 0.058 3.942 5 O -0.326 6.326 6 C 0.095 3.905 7 C -0.186 4.186 8 C -0.096 4.096 9 C -0.142 4.142 10 C -0.125 4.125 11 C 0.099 3.901 12 N -0.656 5.656 13 C 0.510 3.490 14 O -0.561 6.561 15 C -0.116 4.116 16 C 0.044 3.956 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.255 1.255 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.424 0.576 39 H 0.106 0.894 40 H 0.108 0.892 41 H -0.014 1.014 42 H -0.016 1.016 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.350 25.258 -0.395 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.016 4.016 5 O -0.240 6.240 6 C 0.047 3.953 7 C -0.205 4.205 8 C -0.115 4.115 9 C -0.161 4.161 10 C -0.146 4.146 11 C 0.004 3.996 12 N -0.301 5.301 13 C 0.300 3.700 14 O -0.439 6.439 15 C -0.156 4.156 16 C 0.006 3.994 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.179 1.179 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.262 0.738 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.044 24.728 0.244 28.439 hybrid contribution -0.628 -0.782 -0.482 1.113 sum 13.416 23.946 -0.238 27.449 Atomic orbital electron populations 1.21831 0.95009 1.01525 1.02255 1.21146 0.96380 0.96825 0.96766 1.21756 1.01685 0.93342 1.03065 1.23169 1.00503 0.77876 1.00062 1.85985 1.74831 1.22280 1.40944 1.18687 0.98713 0.88082 0.89770 1.21392 1.02689 1.02004 0.94440 1.21287 0.98922 0.92764 0.98498 1.21230 0.99637 0.96690 0.98535 1.21312 0.98396 1.00402 0.94451 1.17458 0.99622 0.90162 0.92354 1.43402 1.45720 1.27959 1.13023 1.21580 0.77478 0.79654 0.91246 1.90622 1.61790 1.64561 1.26945 1.21661 1.00361 0.98452 0.95119 1.18684 0.93679 0.91727 0.95325 1.21697 1.30347 1.11125 0.94982 0.90597 1.26134 0.97403 0.98020 0.98849 1.70177 1.41089 1.23065 1.23374 0.85314 0.77556 0.78666 0.78672 1.19680 1.21157 1.17922 0.91612 0.93843 0.92557 0.90410 0.91458 0.91186 0.91834 0.91289 0.90441 0.82209 0.82296 0.84190 0.86156 0.73791 0.87594 0.87375 0.99601 0.99777 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.09 71.98 0.65 -1.57 16 2 C -0.09 -1.16 3.16 -10.79 -0.03 -1.20 16 3 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 4 C 0.06 0.84 4.12 71.98 0.30 1.13 16 5 O -0.33 -7.22 9.09 -93.28 -0.85 -8.07 16 6 C 0.09 2.40 6.70 22.60 0.15 2.56 16 7 C -0.19 -3.68 9.04 22.34 0.20 -3.47 16 8 C -0.10 -1.89 10.04 22.28 0.22 -1.66 16 9 C -0.14 -3.63 10.04 22.27 0.22 -3.41 16 10 C -0.13 -4.20 8.72 22.38 0.20 -4.00 16 11 C 0.10 3.16 6.45 38.18 0.25 3.40 16 12 N -0.66 -21.32 5.29 -303.14 -1.60 -22.92 16 13 C 0.51 20.97 7.64 87.66 0.67 21.64 16 14 O -0.56 -27.99 13.15 -3.07 -0.04 -28.03 16 15 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 16 C 0.04 2.45 4.26 29.85 0.13 2.58 16 17 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 18 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 19 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 20 N -0.94 -59.91 13.29 21.45 0.28 -59.62 16 21 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.83 7.82 -2.38 -0.02 0.82 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 33 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 34 H 0.16 2.03 6.30 -2.91 -0.02 2.02 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.12 4.83 5.79 -2.91 -0.02 4.82 16 38 H 0.42 11.15 8.35 -92.71 -0.77 10.37 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 42 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 43 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -76.95 357.41 4.52 -72.43 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.22 Total: 19.57 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.48 Total: -20.06 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.32 Total: -82.54 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.89 Total: -36.10 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.95 4.52 -72.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291531154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.261 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds