Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.52996 * 109.47015 * 60.00438 * 4 2 1 6 6 N 1.46502 * 109.46998 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99912 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99805 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.47028 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47028 * 179.97438 * 10 9 7 12 12 H 1.07991 * 119.99990 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99607 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00514 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99705 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46927 * 89.99820 * 15 13 11 17 17 H 1.48502 * 109.46878 * 209.99634 * 15 13 11 18 18 H 1.48502 * 109.47052 * 329.99718 * 15 13 11 19 19 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 20 20 C 1.38237 * 119.99744 * 270.00236 * 19 2 1 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 90.01446 * 19 2 1 25 25 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 26 26 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 27 27 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 28 28 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 31 31 H 1.09001 * 109.47028 * 299.99676 * 5 4 2 32 32 H 1.08996 * 109.47386 * 59.99564 * 5 4 2 33 33 H 0.97002 * 120.00060 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.47151 * 299.99723 * 9 7 6 35 35 H 1.09000 * 109.46984 * 59.99977 * 9 7 6 36 36 H 1.08998 * 109.46892 * 300.00697 * 10 9 7 37 37 H 1.09008 * 109.46630 * 60.00148 * 10 9 7 38 38 H 0.96996 * 120.00577 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4984 6 7 2.0177 -0.6911 -3.6946 7 6 1.6925 -0.2304 -4.9188 8 8 0.9956 0.7560 -5.0300 9 6 2.1947 -0.9409 -6.1492 10 6 1.6847 -0.2197 -7.3985 11 6 2.1874 -0.9299 -8.6289 12 1 2.8082 -1.8079 -8.5298 13 6 1.8548 -0.4584 -9.8812 14 7 1.0984 0.6106 -10.0019 15 14 2.4774 -1.3391 -11.4064 16 1 1.4988 -2.3804 -11.8108 17 1 2.6430 -0.3599 -12.5104 18 1 3.7852 -1.9772 -11.1103 19 6 2.0323 -0.7104 1.2305 20 6 2.2627 0.0005 2.3934 21 6 2.7240 -0.6510 3.5219 22 6 2.9540 -2.0137 3.4878 23 6 2.7283 -2.7238 2.3235 24 6 2.2631 -2.0730 1.1962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 2.9704 1.4236 -0.0004 29 1 3.1299 -0.7217 -1.2490 30 1 1.6766 -1.7489 -1.2492 31 1 0.4399 0.0000 -2.4984 32 1 1.8932 1.0276 -2.4985 33 1 2.5754 -1.4798 -3.6056 34 1 3.2847 -0.9413 -6.1490 35 1 1.8310 -1.9684 -6.1493 36 1 0.5947 -0.2196 -7.3983 37 1 2.0481 0.8080 -7.3985 38 1 0.8641 0.9420 -10.8829 39 1 2.0830 1.0652 2.4200 40 1 2.9044 -0.0955 4.4303 41 1 3.3140 -2.5227 4.3697 42 1 2.9121 -3.7877 2.2956 43 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291969034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -82.618885 kcal Electronic energy + Delta-G solvation = -22261.086838 eV Core-core repulsion = 18884.348253 eV Total energy + Delta-G solvation = -3376.738584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38579 -39.05953 -37.71557 -34.82376 -33.41781 -32.96742 -31.26419 -31.09516 -30.24836 -28.55619 -25.87466 -24.47578 -23.13186 -22.28349 -21.33516 -20.47389 -19.51260 -17.92730 -16.93874 -16.56383 -15.98301 -15.73960 -15.55112 -15.20011 -14.91349 -14.75415 -14.42403 -14.08636 -13.88172 -13.74371 -13.02068 -12.94979 -12.64084 -12.48365 -12.30400 -12.13752 -11.91957 -11.82271 -11.61840 -11.19523 -11.13722 -10.95324 -10.90734 -10.58857 -10.33689 -9.93066 -9.63792 -9.27774 -9.17460 -9.11485 -8.95930 -8.71608 -8.30046 -5.94095 -3.98529 0.94981 1.04358 3.31101 3.34427 3.38763 3.40353 3.42788 3.52161 3.92169 4.18707 4.47280 4.50797 4.63734 4.66442 4.71703 4.79138 4.96456 5.12986 5.15807 5.27934 5.38788 5.40617 5.51615 5.56277 5.62060 5.68651 5.69332 5.80277 6.02133 6.09069 6.11267 6.16113 6.21783 6.25926 6.27408 6.62761 6.77081 6.92515 7.34767 7.76586 7.89184 7.93087 8.09764 8.41064 8.83388 9.10363 9.64810 11.16848 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.002322 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.425324 B =12057.512330 C =12529.459134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.179 3.821 3 O -0.549 6.549 4 C -0.156 4.156 5 C 0.121 3.879 6 N -0.747 5.747 7 C 0.508 3.492 8 O -0.534 6.534 9 C -0.130 4.130 10 C 0.036 3.964 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.114 4.114 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.378 0.622 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.395 0.605 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -6.162 29.058 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.138 3.862 3 O -0.355 6.355 4 C -0.194 4.194 5 C -0.003 4.003 6 N -0.401 5.401 7 C 0.296 3.704 8 O -0.409 6.409 9 C -0.170 4.170 10 C -0.001 4.001 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.130 4.130 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.225 0.775 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.943 -5.167 28.825 29.432 hybrid contribution 1.246 -1.084 -0.681 1.786 sum 4.189 -6.251 28.145 29.133 Atomic orbital electron populations 1.21841 0.91509 1.02750 1.03648 1.19876 0.95082 0.81580 0.89699 1.86591 1.26910 1.25200 1.96751 1.22534 1.01771 1.00602 0.94471 1.21223 0.99441 0.96686 0.82904 1.46228 1.55442 1.32574 1.05860 1.21552 0.79573 0.84648 0.84590 1.90674 1.37222 1.26264 1.86745 1.21862 1.01381 1.00362 0.93396 1.18901 0.97110 0.95632 0.88464 1.21225 1.31883 1.12377 0.91034 0.92623 1.25034 0.95228 0.95051 0.99141 1.69996 1.36540 1.22820 1.23456 0.86589 0.79143 0.79366 0.82820 1.20686 1.21231 1.19912 1.20548 1.00314 0.94444 0.96156 1.21050 0.98428 1.00520 0.92124 1.21183 0.99720 0.94735 0.98393 1.21204 1.00075 0.94509 0.98111 1.21174 0.99637 0.99997 0.93132 1.21160 0.99080 0.93986 0.98753 0.91708 0.90611 0.90964 0.77469 0.90749 0.90075 0.91553 0.91147 0.77159 0.90319 0.90324 0.95835 0.95823 0.92954 0.85340 0.86058 0.86178 0.85982 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.47 37.15 0.31 -0.95 16 2 C 0.18 1.53 0.92 -91.77 -0.08 1.45 16 3 O -0.55 -5.11 11.29 -35.23 -0.40 -5.51 16 4 C -0.16 -1.32 3.87 -26.73 -0.10 -1.42 16 5 C 0.12 1.51 5.18 -4.04 -0.02 1.49 16 6 N -0.75 -10.45 5.56 -60.30 -0.33 -10.78 16 7 C 0.51 9.96 7.83 -10.98 -0.09 9.88 16 8 O -0.53 -12.97 15.98 5.56 0.09 -12.88 16 9 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 10 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 11 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.11 -0.93 4.81 -104.62 -0.50 -1.43 16 20 C -0.10 -0.82 9.35 -39.58 -0.37 -1.19 16 21 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 22 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.11 -0.84 9.14 -39.58 -0.36 -1.21 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.77 6.43 -51.93 -0.33 0.44 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.38 2.44 9.04 45.56 0.41 2.86 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.60 6.51 -51.93 -0.34 0.26 16 31 H 0.07 0.91 6.43 -51.93 -0.33 0.57 16 32 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 39 H 0.13 0.97 7.48 -52.48 -0.39 0.58 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.80 6.17 -52.49 -0.32 0.48 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -35.65 356.49 -8.47 -44.12 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.82 Total: 2.76 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.09 Total: -12.91 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.40 Total: -37.75 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.31 Total: -18.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.65 -8.47 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291969034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.495 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds