Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.52996 * 109.47015 * 60.00438 * 4 2 1 6 6 N 1.46502 * 109.46998 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99912 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99805 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.47028 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47028 * 179.97438 * 10 9 7 12 12 H 1.07991 * 119.99990 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99607 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00514 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99705 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46927 * 89.99820 * 15 13 11 17 17 H 1.48502 * 109.46878 * 209.99634 * 15 13 11 18 18 H 1.48502 * 109.47052 * 329.99718 * 15 13 11 19 19 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 20 20 C 1.38237 * 119.99744 * 270.00236 * 19 2 1 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 90.01446 * 19 2 1 25 25 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 26 26 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 27 27 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 28 28 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 31 31 H 1.09001 * 109.47028 * 299.99676 * 5 4 2 32 32 H 1.08996 * 109.47386 * 59.99564 * 5 4 2 33 33 H 0.97002 * 120.00060 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.47151 * 299.99723 * 9 7 6 35 35 H 1.09000 * 109.46984 * 59.99977 * 9 7 6 36 36 H 1.08998 * 109.46892 * 300.00697 * 10 9 7 37 37 H 1.09008 * 109.46630 * 60.00148 * 10 9 7 38 38 H 0.96996 * 120.00577 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4984 6 7 2.0177 -0.6911 -3.6946 7 6 1.6925 -0.2304 -4.9188 8 8 0.9956 0.7560 -5.0300 9 6 2.1947 -0.9409 -6.1492 10 6 1.6847 -0.2197 -7.3985 11 6 2.1874 -0.9299 -8.6289 12 1 2.8082 -1.8079 -8.5298 13 6 1.8548 -0.4584 -9.8812 14 7 1.0984 0.6106 -10.0019 15 14 2.4774 -1.3391 -11.4064 16 1 1.4988 -2.3804 -11.8108 17 1 2.6430 -0.3599 -12.5104 18 1 3.7852 -1.9772 -11.1103 19 6 2.0323 -0.7104 1.2305 20 6 2.2627 0.0005 2.3934 21 6 2.7240 -0.6510 3.5219 22 6 2.9540 -2.0137 3.4878 23 6 2.7283 -2.7238 2.3235 24 6 2.2631 -2.0730 1.1962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 2.9704 1.4236 -0.0004 29 1 3.1299 -0.7217 -1.2490 30 1 1.6766 -1.7489 -1.2492 31 1 0.4399 0.0000 -2.4984 32 1 1.8932 1.0276 -2.4985 33 1 2.5754 -1.4798 -3.6056 34 1 3.2847 -0.9413 -6.1490 35 1 1.8310 -1.9684 -6.1493 36 1 0.5947 -0.2196 -7.3983 37 1 2.0481 0.8080 -7.3985 38 1 0.8641 0.9420 -10.8829 39 1 2.0830 1.0652 2.4200 40 1 2.9044 -0.0955 4.4303 41 1 3.3140 -2.5227 4.3697 42 1 2.9121 -3.7877 2.2956 43 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291969034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -108.115982 kcal Electronic energy + Delta-G solvation = -22262.192475 eV Core-core repulsion = 18884.348253 eV Total energy + Delta-G solvation = -3377.844221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09330 -40.47829 -38.41196 -36.05727 -35.51990 -33.81705 -32.98730 -31.76533 -31.11632 -29.47465 -27.66630 -25.53419 -23.87832 -23.41507 -22.62581 -21.44254 -20.79717 -18.84541 -18.51726 -17.58301 -17.10905 -16.95847 -16.81720 -16.43890 -16.14103 -15.73944 -15.50182 -15.07213 -14.91426 -14.51107 -14.27543 -14.08810 -14.03563 -13.58484 -13.30078 -13.23799 -13.16660 -12.82282 -12.71862 -12.47814 -12.45784 -12.35944 -11.93948 -11.90164 -11.63138 -11.59740 -11.30011 -11.07792 -10.65742 -10.56579 -10.03114 -9.80045 -9.66757 -8.17274 -6.31596 0.41461 0.51957 1.42529 1.45598 1.56501 1.73716 2.25223 2.45478 2.87556 3.15507 3.25837 3.52550 3.79549 3.93306 4.08085 4.17042 4.17916 4.21508 4.31684 4.40582 4.52603 4.55652 4.57768 4.68350 4.69554 4.84151 4.90254 4.95347 5.04679 5.12333 5.14573 5.19378 5.27177 5.47416 5.53903 5.59301 5.64021 5.65259 5.67193 5.86368 6.12235 6.18227 6.64750 6.78883 6.87258 7.37605 7.39527 8.95463 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.002322 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.425324 B =12057.512330 C =12529.459134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.182 3.818 3 O -0.566 6.566 4 C -0.142 4.142 5 C 0.122 3.878 6 N -0.718 5.718 7 C 0.508 3.492 8 O -0.592 6.592 9 C -0.119 4.119 10 C 0.040 3.960 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.010 4.010 14 N -0.938 5.938 15 Si 0.976 3.024 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.254 1.254 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.119 4.119 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.389 0.611 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.106 0.894 36 H -0.019 1.019 37 H -0.020 1.020 38 H 0.263 0.737 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -9.135 30.087 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.141 3.859 3 O -0.374 6.374 4 C -0.180 4.180 5 C -0.002 4.002 6 N -0.372 5.372 7 C 0.296 3.704 8 O -0.472 6.472 9 C -0.159 4.159 10 C 0.003 3.997 11 C -0.580 4.580 12 H 0.095 0.905 13 C -0.207 4.207 14 N -0.579 5.579 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.178 1.178 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.137 4.137 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.238 0.762 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.254 0.746 34 H 0.123 0.877 35 H 0.124 0.876 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.900 -8.196 29.913 31.401 hybrid contribution 0.638 -0.131 -0.892 1.104 sum 5.538 -8.327 29.021 30.696 Atomic orbital electron populations 1.21870 0.92275 1.03281 1.02583 1.19817 0.94575 0.81367 0.90127 1.86569 1.28093 1.25915 1.96807 1.22458 1.02648 1.00907 0.91949 1.21282 0.98789 0.96311 0.83769 1.45899 1.54131 1.32577 1.04552 1.21380 0.79057 0.83866 0.86062 1.90661 1.40066 1.28848 1.87661 1.21638 1.02758 1.00658 0.90800 1.18702 0.94476 0.94327 0.92214 1.21724 1.31833 1.12906 0.91557 0.90451 1.26177 0.95271 0.95798 1.03437 1.70183 1.38252 1.24953 1.24469 0.85295 0.79302 0.77939 0.77534 1.19674 1.21269 1.17807 1.20458 1.01046 0.94824 0.95746 1.21132 0.99049 1.00568 0.92636 1.21421 0.99454 0.95250 0.98691 1.21510 0.99571 0.94472 0.98906 1.21468 0.99121 1.01037 0.92947 1.21355 0.99042 0.93709 0.99612 0.92027 0.92395 0.89667 0.76202 0.89108 0.88064 0.92854 0.93056 0.74580 0.87674 0.87579 1.00056 1.00107 0.92880 0.85715 0.84655 0.84317 0.84162 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.47 71.98 0.61 -1.93 16 2 C 0.18 2.93 0.92 -11.54 -0.01 2.92 16 3 O -0.57 -10.40 11.29 -148.98 -1.68 -12.08 16 4 C -0.14 -2.09 3.87 30.59 0.12 -1.97 16 5 C 0.12 2.96 5.18 86.38 0.45 3.41 16 6 N -0.72 -18.92 5.56 -463.06 -2.57 -21.49 16 7 C 0.51 19.93 7.83 87.66 0.69 20.62 16 8 O -0.59 -30.09 15.98 -3.03 -0.05 -30.14 16 9 C -0.12 -4.77 5.64 29.85 0.17 -4.61 16 10 C 0.04 2.29 4.26 29.85 0.13 2.42 16 11 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 12 H 0.08 4.00 7.74 -2.92 -0.02 3.98 16 13 C -0.01 -0.56 5.46 84.66 0.46 -0.10 16 14 N -0.94 -60.27 13.29 21.45 0.28 -59.98 16 15 Si 0.98 44.51 29.54 68.60 2.03 46.54 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 19 C -0.12 -1.75 4.81 -19.86 -0.10 -1.85 16 20 C -0.12 -1.71 9.35 22.27 0.21 -1.51 16 21 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 22 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 23 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 24 C -0.12 -1.49 9.14 22.27 0.20 -1.29 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.22 6.43 -2.39 -0.02 1.21 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.39 4.82 9.04 -74.06 -0.67 4.15 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.13 6.51 -2.39 -0.02 1.12 16 31 H 0.05 1.48 6.43 -2.39 -0.02 1.46 16 32 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 33 H 0.42 7.48 8.47 -92.71 -0.79 6.70 16 34 H 0.11 3.67 8.14 -2.39 -0.02 3.66 16 35 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 36 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 37 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.12 1.85 7.48 -2.91 -0.02 1.83 16 40 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.14 1.28 6.17 -2.91 -0.02 1.27 16 Total: -1.00 -81.14 356.49 1.40 -79.74 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -0.44 Total: 16.01 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.83 Total: -18.60 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.29 Total: -81.47 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.73 Total: -42.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.14 1.40 -79.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291969034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.372 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds