Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00140 * 2 1 4 4 C 1.53000 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46684 * 60.00316 * 4 3 2 6 6 C 1.52996 * 109.47318 * 300.00584 * 4 3 2 7 7 C 1.52999 * 109.47108 * 179.97438 * 4 3 2 8 8 N 1.46492 * 109.47134 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00403 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99740 * 0.02562 * 9 8 7 11 11 C 1.47639 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.40007 * 119.89573 * 0.24611 * 11 9 8 13 13 C 1.36318 * 120.10468 * 180.25591 * 12 11 9 14 14 C 1.40884 * 119.89177 * 359.47662 * 13 12 11 15 15 C 1.41116 * 120.10368 * 180.29746 * 14 13 12 16 16 H 1.07997 * 120.00134 * 154.53831 * 15 14 13 17 17 C 1.40227 * 119.99714 * 334.53632 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.04996 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.05218 * 17 15 14 20 20 H 1.48501 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47265 * 119.99809 * 19 17 15 22 22 H 1.48498 * 109.47305 * 239.99792 * 19 17 15 23 23 C 1.40889 * 119.79628 * 0.27580 * 14 13 12 24 24 C 1.36316 * 119.88883 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47281 * 59.99531 * 1 2 3 26 26 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47002 * 299.99533 * 1 2 3 28 28 H 1.09000 * 109.46594 * 60.00190 * 3 2 1 29 29 H 1.09003 * 109.47165 * 300.00570 * 3 2 1 30 30 H 1.08998 * 109.46735 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47369 * 299.99687 * 5 4 3 32 32 H 1.08995 * 109.47029 * 60.00368 * 5 4 3 33 33 H 1.09000 * 109.47011 * 300.00110 * 6 4 3 34 34 H 1.08999 * 109.47374 * 59.99921 * 6 4 3 35 35 H 1.08998 * 109.47228 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.46513 * 60.00323 * 7 4 3 37 37 H 1.08994 * 109.47508 * 300.00819 * 7 4 3 38 38 H 0.97005 * 120.00342 * 0.02562 * 8 7 4 39 39 H 1.08000 * 119.95276 * 0.03420 * 12 11 9 40 40 H 1.08007 * 120.05277 * 179.74755 * 13 12 11 41 41 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.05358 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.94674 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9873 0.4251 -1.2484 6 6 3.9864 0.4254 1.2501 7 6 4.1578 2.5823 0.0000 8 7 5.6181 2.4666 0.0000 9 6 6.3822 3.5769 0.0000 10 8 5.8593 4.6747 0.0005 11 6 7.8540 3.4603 -0.0006 12 6 8.4537 2.1952 -0.0063 13 6 9.8122 2.0825 -0.0016 14 6 10.6129 3.2418 -0.0021 15 6 12.0197 3.1303 -0.0036 16 1 12.6242 3.9296 -0.4060 17 6 12.6325 1.9818 0.5176 18 7 11.9568 1.1750 1.2917 19 14 14.4151 1.6054 0.1050 20 1 14.9521 2.6667 -0.7842 21 1 15.2132 1.5568 1.3564 22 1 14.4970 0.2934 -0.5856 23 6 10.0048 4.5126 -0.0015 24 6 8.6455 4.6153 -0.0011 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 5.0739 0.3394 -1.2482 31 1 3.5440 -0.5707 -1.2485 32 1 3.6661 0.9660 -2.1385 33 1 3.6644 0.9664 2.1399 34 1 3.5431 -0.5703 1.2500 35 1 5.0730 0.3390 1.2503 36 1 3.8358 3.1237 0.8896 37 1 3.8364 3.1227 -0.8903 38 1 6.0354 1.5909 0.0000 39 1 7.8392 1.3071 -0.0109 40 1 10.2740 1.1062 -0.0019 41 1 12.3806 0.3802 1.6520 42 1 10.6146 5.4041 -0.0023 43 1 8.1783 5.5890 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292084707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -84.352402 kcal Electronic energy + Delta-G solvation = -22783.627813 eV Core-core repulsion = 19406.814058 eV Total energy + Delta-G solvation = -3376.813755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.55093 -38.50030 -37.17193 -36.15763 -33.85628 -32.80624 -30.17538 -29.43812 -27.62701 -27.28761 -26.98114 -25.86283 -24.62527 -21.82641 -20.92466 -19.62500 -19.17360 -17.52496 -17.07299 -16.43983 -16.07483 -15.70596 -15.31253 -14.85168 -14.84371 -14.08425 -13.90730 -13.65784 -13.39726 -13.34205 -13.06621 -12.71875 -12.64707 -12.09794 -11.94072 -11.89902 -11.76873 -11.74035 -11.38030 -11.27489 -10.98756 -10.92020 -10.84557 -10.65559 -10.63385 -10.02866 -9.87370 -9.55861 -9.35951 -8.96813 -8.56243 -7.71668 -7.52792 -7.02414 -4.59855 2.23696 2.91001 2.95592 3.01075 3.03902 3.37973 3.74692 3.88556 4.02449 4.56833 4.65311 4.66320 4.80381 5.05983 5.07433 5.19600 5.36013 5.36275 5.39808 5.57264 5.67651 5.69066 5.82027 5.88902 5.94731 6.02103 6.05561 6.14599 6.28785 6.31317 6.32543 6.77290 6.83501 6.89213 6.97107 7.07437 7.13907 7.44345 7.65800 7.79631 7.86674 8.07774 8.25542 8.40652 8.63821 8.75722 9.09360 9.89733 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.003024 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.282250 B = 9256.009731 C =10041.373614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.075 3.925 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.139 4.139 7 C 0.135 3.865 8 N -0.737 5.737 9 C 0.571 3.429 10 O -0.577 6.577 11 C -0.283 4.283 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.773 5.773 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.238 4.238 24 C -0.023 4.023 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 -5.723 -1.619 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.003 4.003 4 C -0.075 4.075 5 C -0.196 4.196 6 C -0.196 4.196 7 C 0.011 3.989 8 N -0.391 5.391 9 C 0.366 3.634 10 O -0.459 6.459 11 C -0.287 4.287 12 C -0.082 4.082 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.396 5.396 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.234 0.766 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.065 -5.336 -1.466 15.114 hybrid contribution 0.686 -0.465 -0.009 0.829 sum -13.378 -5.801 -1.475 14.656 Atomic orbital electron populations 1.22725 0.81271 1.02600 0.99908 1.87862 1.19316 1.27791 1.95386 1.22454 0.92804 0.84591 1.00403 1.20795 0.93237 0.95774 0.97685 1.21808 1.01331 1.00503 0.95946 1.21807 1.01381 1.00492 0.95936 1.21074 0.81430 0.94589 1.01831 1.45887 1.05405 1.09687 1.78160 1.18585 0.87638 0.82980 0.74192 1.90630 1.75473 1.26882 1.52936 1.18900 0.89937 0.94476 1.25394 1.20464 0.95239 0.94193 0.98312 1.20976 0.91940 0.99191 1.07513 1.17797 0.93397 0.91007 0.85290 1.19871 0.92098 1.01987 1.33108 0.89704 1.26095 1.01192 0.94938 0.92499 1.69747 1.38760 1.10783 1.20337 0.86172 0.81086 0.79584 0.79505 1.18086 1.19685 1.19405 1.20729 0.93560 0.96830 1.14650 1.20365 0.93356 0.96210 0.94248 0.94184 0.89733 0.94169 0.93016 0.93020 0.92311 0.91621 0.92665 0.92641 0.91625 0.92271 0.91963 0.91975 0.76567 0.89436 0.86193 0.90313 0.88380 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.01 9.35 -35.23 -0.33 -4.34 16 3 C 0.07 0.75 4.81 37.16 0.18 0.93 16 4 C -0.07 -0.85 0.61 -154.51 -0.09 -0.94 16 5 C -0.14 -1.55 8.15 37.16 0.30 -1.25 16 6 C -0.14 -1.58 8.16 37.16 0.30 -1.28 16 7 C 0.14 1.91 4.56 -4.05 -0.02 1.89 16 8 N -0.74 -12.36 4.91 -61.32 -0.30 -12.66 16 9 C 0.57 12.22 7.76 -12.42 -0.10 12.12 16 10 O -0.58 -13.82 16.32 5.29 0.09 -13.74 16 11 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 14 C 0.13 3.27 5.57 -106.80 -0.59 2.68 16 15 C -0.44 -11.02 9.05 -37.74 -0.34 -11.36 16 16 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 17 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 18 N -0.77 -18.51 10.95 55.56 0.61 -17.90 16 19 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 6.86 -51.93 -0.36 0.32 16 31 H 0.06 0.71 7.68 -51.93 -0.40 0.32 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.06 0.70 6.86 -51.93 -0.36 0.35 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.40 6.09 4.16 -40.82 -0.17 5.92 16 39 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 40 H 0.12 2.97 6.18 -52.48 -0.32 2.65 16 41 H 0.29 6.13 8.29 -40.82 -0.34 5.80 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -28.52 351.49 -7.61 -36.13 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.52 Total: 9.82 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.43 Total: -14.86 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.31 Total: -30.56 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.24 Total: -18.08 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.52 -7.61 -36.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292084707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.219 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds