Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00140 * 2 1 4 4 C 1.53000 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46684 * 60.00316 * 4 3 2 6 6 C 1.52996 * 109.47318 * 300.00584 * 4 3 2 7 7 C 1.52999 * 109.47108 * 179.97438 * 4 3 2 8 8 N 1.46492 * 109.47134 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00403 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99740 * 0.02562 * 9 8 7 11 11 C 1.47639 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.40007 * 119.89573 * 0.24611 * 11 9 8 13 13 C 1.36318 * 120.10468 * 180.25591 * 12 11 9 14 14 C 1.40884 * 119.89177 * 359.47662 * 13 12 11 15 15 C 1.41116 * 120.10368 * 180.29746 * 14 13 12 16 16 H 1.07997 * 120.00134 * 154.53831 * 15 14 13 17 17 C 1.40227 * 119.99714 * 334.53632 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.04996 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.05218 * 17 15 14 20 20 H 1.48501 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47265 * 119.99809 * 19 17 15 22 22 H 1.48498 * 109.47305 * 239.99792 * 19 17 15 23 23 C 1.40889 * 119.79628 * 0.27580 * 14 13 12 24 24 C 1.36316 * 119.88883 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47281 * 59.99531 * 1 2 3 26 26 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47002 * 299.99533 * 1 2 3 28 28 H 1.09000 * 109.46594 * 60.00190 * 3 2 1 29 29 H 1.09003 * 109.47165 * 300.00570 * 3 2 1 30 30 H 1.08998 * 109.46735 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47369 * 299.99687 * 5 4 3 32 32 H 1.08995 * 109.47029 * 60.00368 * 5 4 3 33 33 H 1.09000 * 109.47011 * 300.00110 * 6 4 3 34 34 H 1.08999 * 109.47374 * 59.99921 * 6 4 3 35 35 H 1.08998 * 109.47228 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.46513 * 60.00323 * 7 4 3 37 37 H 1.08994 * 109.47508 * 300.00819 * 7 4 3 38 38 H 0.97005 * 120.00342 * 0.02562 * 8 7 4 39 39 H 1.08000 * 119.95276 * 0.03420 * 12 11 9 40 40 H 1.08007 * 120.05277 * 179.74755 * 13 12 11 41 41 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.05358 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.94674 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9873 0.4251 -1.2484 6 6 3.9864 0.4254 1.2501 7 6 4.1578 2.5823 0.0000 8 7 5.6181 2.4666 0.0000 9 6 6.3822 3.5769 0.0000 10 8 5.8593 4.6747 0.0005 11 6 7.8540 3.4603 -0.0006 12 6 8.4537 2.1952 -0.0063 13 6 9.8122 2.0825 -0.0016 14 6 10.6129 3.2418 -0.0021 15 6 12.0197 3.1303 -0.0036 16 1 12.6242 3.9296 -0.4060 17 6 12.6325 1.9818 0.5176 18 7 11.9568 1.1750 1.2917 19 14 14.4151 1.6054 0.1050 20 1 14.9521 2.6667 -0.7842 21 1 15.2132 1.5568 1.3564 22 1 14.4970 0.2934 -0.5856 23 6 10.0048 4.5126 -0.0015 24 6 8.6455 4.6153 -0.0011 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 5.0739 0.3394 -1.2482 31 1 3.5440 -0.5707 -1.2485 32 1 3.6661 0.9660 -2.1385 33 1 3.6644 0.9664 2.1399 34 1 3.5431 -0.5703 1.2500 35 1 5.0730 0.3390 1.2503 36 1 3.8358 3.1237 0.8896 37 1 3.8364 3.1227 -0.8903 38 1 6.0354 1.5909 0.0000 39 1 7.8392 1.3071 -0.0109 40 1 10.2740 1.1062 -0.0019 41 1 12.3806 0.3802 1.6520 42 1 10.6146 5.4041 -0.0023 43 1 8.1783 5.5890 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292084707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -100.091126 kcal Electronic energy + Delta-G solvation = -22784.310295 eV Core-core repulsion = 19406.814058 eV Total energy + Delta-G solvation = -3377.496238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98583 -39.65733 -38.81490 -37.27563 -35.65738 -34.20703 -31.94562 -31.29233 -28.40289 -28.32373 -28.19260 -27.12194 -25.76022 -23.52668 -22.76305 -21.26271 -20.20903 -19.35798 -18.49946 -17.47339 -17.23485 -16.82927 -16.66258 -16.13980 -15.96040 -15.73108 -15.45223 -14.98593 -14.85331 -14.52550 -14.30996 -14.10895 -13.86201 -13.70993 -13.59337 -13.21185 -12.84902 -12.77451 -12.71567 -12.60038 -12.43031 -12.36929 -11.85755 -11.83215 -11.75224 -11.54813 -11.36586 -11.12751 -10.72247 -10.57371 -10.05204 -9.57036 -9.38921 -8.78221 -6.47797 0.44390 1.15257 1.39216 1.42647 1.55863 2.13084 2.18649 2.28079 2.79514 2.95989 3.68866 3.70901 3.74953 3.91183 4.25883 4.30138 4.33085 4.42613 4.45070 4.46162 4.58671 4.63106 4.70969 4.76907 4.85058 4.89200 4.92747 5.01086 5.01502 5.04027 5.11812 5.16499 5.30385 5.37880 5.38640 5.55640 5.60407 5.82526 5.94830 6.00077 6.23320 6.24355 6.54695 6.69914 6.77958 6.89370 7.44146 8.17210 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.003024 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.282250 B = 9256.009731 C =10041.373614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.077 3.923 4 C -0.067 4.067 5 C -0.137 4.137 6 C -0.137 4.137 7 C 0.134 3.866 8 N -0.719 5.719 9 C 0.571 3.429 10 O -0.606 6.606 11 C -0.292 4.292 12 C -0.053 4.053 13 C -0.196 4.196 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.037 3.963 18 N -0.799 5.799 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.252 4.252 24 C -0.033 4.033 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.104 0.896 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 -7.131 -1.763 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.001 4.001 4 C -0.067 4.067 5 C -0.194 4.194 6 C -0.194 4.194 7 C 0.011 3.989 8 N -0.372 5.372 9 C 0.365 3.635 10 O -0.491 6.491 11 C -0.296 4.296 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.182 4.182 18 N -0.423 5.423 19 Si 0.807 3.193 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.272 4.272 24 C -0.052 4.052 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.244 0.756 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.692 -6.775 -1.605 16.259 hybrid contribution 0.742 -0.044 0.062 0.746 sum -13.950 -6.819 -1.543 15.604 Atomic orbital electron populations 1.22909 0.79709 1.03727 1.00702 1.87823 1.21029 1.27737 1.95544 1.22390 0.91622 0.84885 1.01154 1.20699 0.94295 0.93855 0.97851 1.21792 1.00958 1.00786 0.95862 1.21791 1.00926 1.00808 0.95916 1.21229 0.79507 0.96514 1.01687 1.45735 1.06558 1.08800 1.76130 1.18385 0.87266 0.83577 0.74293 1.90612 1.75769 1.28187 1.54497 1.19180 0.91167 0.94490 1.24795 1.20700 0.94814 0.95183 0.96546 1.21012 0.92871 0.98654 1.09033 1.18148 0.94280 0.91717 0.86053 1.20124 0.92215 1.03328 1.34367 0.89723 1.26921 1.05498 0.94080 0.91671 1.69763 1.40775 1.11261 1.20461 0.85067 0.75385 0.79450 0.79364 1.18091 1.18875 1.18440 1.20870 0.94021 0.96971 1.15317 1.20516 0.93390 0.96887 0.94447 0.93354 0.88529 0.93405 0.92371 0.92251 0.92862 0.91098 0.92462 0.92597 0.91078 0.92938 0.92201 0.92024 0.75572 0.86130 0.86814 0.89216 0.87775 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.48 9.35 -148.98 -1.39 -8.87 16 3 C 0.08 1.38 4.81 71.98 0.35 1.73 16 4 C -0.07 -1.39 0.61 -52.18 -0.03 -1.42 16 5 C -0.14 -2.80 8.15 71.99 0.59 -2.21 16 6 C -0.14 -2.87 8.16 71.98 0.59 -2.29 16 7 C 0.13 3.58 4.56 86.38 0.39 3.98 16 8 N -0.72 -23.16 4.91 -466.18 -2.29 -25.45 16 9 C 0.57 24.09 7.76 86.73 0.67 24.76 16 10 O -0.61 -28.90 16.32 -4.00 -0.07 -28.97 16 11 C -0.29 -13.37 5.89 -19.93 -0.12 -13.48 16 12 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.71 8.63 22.47 0.19 -9.52 16 14 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 15 C -0.47 -23.93 9.05 23.46 0.21 -23.71 16 16 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 17 C 0.04 1.72 5.15 85.35 0.44 2.16 16 18 N -0.80 -38.16 10.95 21.87 0.24 -37.92 16 19 Si 0.99 34.82 29.59 68.60 2.03 36.85 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 21 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 22 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 23 C -0.25 -12.58 9.73 22.47 0.22 -12.36 16 24 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.13 6.86 -2.39 -0.02 1.12 16 31 H 0.07 1.39 7.68 -2.39 -0.02 1.37 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 35 H 0.05 1.15 6.86 -2.39 -0.02 1.14 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.41 11.72 4.16 -92.70 -0.39 11.34 16 39 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 40 H 0.11 5.69 6.18 -2.91 -0.02 5.68 16 41 H 0.30 12.54 8.29 -92.70 -0.77 11.77 16 42 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 43 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 Total: -1.00 -60.95 351.49 4.19 -56.76 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.62 Total: 36.78 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.05 Total: -29.17 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -2.05 Total: -63.37 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.46 Total: -37.84 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -60.95 4.19 -56.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292084707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.334 kcal (2) G-P(sol) polarization free energy of solvation -60.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds