Wall clock time and date at job start Tue Mar 31 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46826 * 2 1 4 4 C 1.53000 * 109.46983 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47199 * 179.97438 * 4 3 2 6 6 C 1.35903 * 117.00082 * 179.97438 * 5 4 3 7 7 C 1.38807 * 120.02025 * 359.72642 * 6 5 4 8 8 C 1.38167 * 120.08520 * 179.74365 * 7 6 5 9 9 C 1.38166 * 120.12253 * 0.55635 * 8 7 6 10 10 C 1.38888 * 120.04159 * 359.69617 * 9 8 7 11 11 N 1.39922 * 120.04668 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00297 * 213.29724 * 11 10 9 13 13 O 1.21287 * 120.00045 * 5.28009 * 12 11 10 14 14 C 1.50699 * 120.00135 * 185.27257 * 12 11 10 15 15 C 1.52995 * 109.47105 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00170 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46848 * 60.00279 * 20 18 16 22 22 H 1.48496 * 109.47037 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47140 * 300.00260 * 20 18 16 24 24 C 1.38590 * 120.01783 * 180.02562 * 6 5 4 25 25 H 1.08999 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47285 * 300.00338 * 1 2 3 27 27 H 1.09007 * 109.46537 * 60.00421 * 1 2 3 28 28 H 1.09000 * 109.47727 * 239.99961 * 2 1 3 29 29 H 1.09007 * 109.47004 * 119.99325 * 2 1 3 30 30 H 1.08999 * 109.47465 * 59.99772 * 3 2 1 31 31 H 1.08994 * 109.47381 * 299.99338 * 3 2 1 32 32 H 1.09000 * 109.47362 * 60.00088 * 4 3 2 33 33 H 1.09002 * 109.47411 * 299.99998 * 4 3 2 34 34 H 1.08001 * 119.95481 * 0.02705 * 7 6 5 35 35 H 1.07998 * 119.93853 * 180.25526 * 8 7 6 36 36 H 1.08000 * 119.98192 * 179.72514 * 9 8 7 37 37 H 0.97000 * 119.99258 * 33.29510 * 11 10 9 38 38 H 1.09001 * 109.47092 * 300.00157 * 14 12 11 39 39 H 1.08997 * 109.46956 * 60.00052 * 14 12 11 40 40 H 1.09001 * 109.47177 * 299.99986 * 15 14 12 41 41 H 1.09004 * 109.47606 * 60.00264 * 15 14 12 42 42 H 0.96995 * 120.00222 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.06534 * 359.95918 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3936 2.9680 0.0010 7 6 6.2396 1.8675 0.0083 8 6 7.6095 2.0470 0.0040 9 6 8.1418 3.3220 0.0040 10 6 7.3002 4.4268 0.0020 11 7 7.8391 5.7181 0.0015 12 6 7.1976 6.7163 0.6406 13 8 6.2052 6.4779 1.2959 14 6 7.7135 8.1288 0.5412 15 6 6.8105 9.0598 1.3529 16 6 7.3268 10.4722 1.2540 17 1 8.2103 10.6845 0.6702 18 6 6.6706 11.4934 1.9078 19 7 5.5945 11.2349 2.6183 20 14 7.3109 13.2440 1.7859 21 1 7.3138 13.6720 0.3639 22 1 6.4338 14.1478 2.5725 23 1 8.6938 13.3039 2.3236 24 6 5.9237 4.2485 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9565 0.8899 31 1 1.6768 1.9564 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 5.8263 0.8697 0.0127 35 1 8.2655 1.1891 0.0055 36 1 9.2130 3.4597 0.0051 37 1 8.6744 5.8947 -0.4588 38 1 8.7287 8.1734 0.9353 39 1 7.7148 8.4425 -0.5026 40 1 5.7951 9.0153 0.9592 41 1 6.8096 8.7460 2.3968 42 1 5.1326 11.9534 3.0780 43 1 5.2670 5.1059 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292198070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:36 Heat of formation + Delta-G solvation = -74.965353 kcal Electronic energy + Delta-G solvation = -21985.236065 eV Core-core repulsion = 18608.829363 eV Total energy + Delta-G solvation = -3376.406702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50067 -39.38483 -37.45293 -35.42322 -34.21996 -33.50433 -31.23345 -30.75439 -29.29942 -28.96253 -25.81716 -24.30535 -23.12752 -22.18503 -21.51094 -20.91766 -19.67947 -18.40454 -17.03017 -16.55920 -16.17880 -16.08188 -15.72355 -15.49132 -15.00434 -14.89912 -14.44864 -13.97810 -13.71454 -13.52349 -13.24651 -13.14474 -12.63225 -12.54198 -12.18559 -12.05459 -11.85377 -11.61757 -11.45191 -11.24580 -11.21699 -10.98528 -10.92455 -10.80850 -10.63622 -10.08530 -9.98941 -9.70487 -9.24583 -9.08599 -8.34148 -8.30358 -7.97496 -5.96959 -4.01887 1.31765 1.47169 2.95950 3.09387 3.34249 3.38487 3.40023 3.46072 3.86822 4.46629 4.54049 4.55545 4.70981 4.81055 4.90796 4.96095 5.08844 5.18259 5.19655 5.34097 5.37880 5.38131 5.43598 5.44664 5.55197 5.58193 5.76916 5.86618 5.93702 5.98045 6.14549 6.15236 6.28205 6.30638 6.45067 6.47876 6.83226 6.98166 7.45026 7.68186 7.72479 7.82459 8.04721 8.35106 8.59610 9.05927 9.61753 11.13918 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002699 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.228319 B =10371.247781 C =11802.776310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.060 3.940 5 O -0.312 6.312 6 C 0.150 3.850 7 C -0.234 4.234 8 C -0.063 4.063 9 C -0.191 4.191 10 C 0.198 3.802 11 N -0.686 5.686 12 C 0.507 3.493 13 O -0.507 6.507 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.159 4.159 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -24.162 -8.149 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.226 6.226 6 C 0.104 3.896 7 C -0.254 4.254 8 C -0.081 4.081 9 C -0.212 4.212 10 C 0.103 3.897 11 N -0.332 5.332 12 C 0.297 3.703 13 O -0.380 6.380 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.180 4.180 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.499 -23.991 -7.539 25.192 hybrid contribution 0.890 0.808 -0.219 1.222 sum -0.609 -23.184 -7.758 24.455 Atomic orbital electron populations 1.21755 0.95188 1.01771 1.02260 1.21429 0.96453 0.95653 1.02274 1.21598 0.92612 0.97663 1.04073 1.22818 0.95364 0.82112 1.01232 1.86092 1.19096 1.28900 1.88474 1.18723 0.82189 0.93515 0.95211 1.21116 0.94363 0.97716 1.12205 1.20629 0.94182 0.96439 0.96886 1.20791 0.99355 0.91563 1.09469 1.17484 0.91511 0.84869 0.95877 1.43992 1.27281 1.06850 1.55086 1.21883 0.83532 0.87752 0.77128 1.90711 1.25166 1.83892 1.38230 1.21917 1.02440 0.88894 1.03601 1.18921 0.94255 0.91764 0.95191 1.21159 1.11992 0.92404 1.31176 0.92577 1.25029 0.94952 0.99136 0.95260 1.69985 1.18389 1.32624 1.31752 0.86632 0.78729 0.84373 0.78082 1.20232 1.21277 1.20237 1.20386 0.94200 0.95990 1.07389 0.92553 0.92429 0.92505 0.91770 0.91712 0.90589 0.90711 0.92170 0.92098 0.85808 0.85693 0.85687 0.75367 0.89843 0.89706 0.95689 0.95708 0.92838 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -1.04 5.58 -26.73 -0.15 -1.19 16 4 C 0.06 0.59 4.74 37.16 0.18 0.77 16 5 O -0.31 -4.47 10.13 -19.44 -0.20 -4.67 16 6 C 0.15 2.22 6.68 -39.24 -0.26 1.95 16 7 C -0.23 -2.79 9.04 -39.40 -0.36 -3.15 16 8 C -0.06 -0.69 10.03 -39.63 -0.40 -1.08 16 9 C -0.19 -2.31 9.96 -39.37 -0.39 -2.70 16 10 C 0.20 3.00 6.28 -83.72 -0.53 2.47 16 11 N -0.69 -10.12 5.34 -9.88 -0.05 -10.17 16 12 C 0.51 9.78 7.57 -10.99 -0.08 9.70 16 13 O -0.51 -11.98 13.67 5.55 0.08 -11.90 16 14 C -0.13 -2.55 5.64 -27.89 -0.16 -2.71 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.16 -2.69 8.59 -39.24 -0.34 -3.03 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 34 H 0.12 1.15 6.29 -52.49 -0.33 0.82 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.41 4.43 8.82 -40.82 -0.36 4.07 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.14 2.84 6.41 -52.49 -0.34 2.50 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -34.52 360.56 -8.68 -43.21 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.86 Total: 1.45 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.80 Total: -13.26 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.68 Total: -36.89 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.12 Total: -16.58 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.52 -8.68 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292198070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.756 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds