Wall clock time and date at job start Tue Mar 31 2020 07:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46826 * 2 1 4 4 C 1.53000 * 109.46983 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47199 * 179.97438 * 4 3 2 6 6 C 1.35903 * 117.00082 * 179.97438 * 5 4 3 7 7 C 1.38807 * 120.02025 * 359.72642 * 6 5 4 8 8 C 1.38167 * 120.08520 * 179.74365 * 7 6 5 9 9 C 1.38166 * 120.12253 * 0.55635 * 8 7 6 10 10 C 1.38888 * 120.04159 * 359.69617 * 9 8 7 11 11 N 1.39922 * 120.04668 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00297 * 213.29724 * 11 10 9 13 13 O 1.21287 * 120.00045 * 5.28009 * 12 11 10 14 14 C 1.50699 * 120.00135 * 185.27257 * 12 11 10 15 15 C 1.52995 * 109.47105 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00170 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46848 * 60.00279 * 20 18 16 22 22 H 1.48496 * 109.47037 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47140 * 300.00260 * 20 18 16 24 24 C 1.38590 * 120.01783 * 180.02562 * 6 5 4 25 25 H 1.08999 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47285 * 300.00338 * 1 2 3 27 27 H 1.09007 * 109.46537 * 60.00421 * 1 2 3 28 28 H 1.09000 * 109.47727 * 239.99961 * 2 1 3 29 29 H 1.09007 * 109.47004 * 119.99325 * 2 1 3 30 30 H 1.08999 * 109.47465 * 59.99772 * 3 2 1 31 31 H 1.08994 * 109.47381 * 299.99338 * 3 2 1 32 32 H 1.09000 * 109.47362 * 60.00088 * 4 3 2 33 33 H 1.09002 * 109.47411 * 299.99998 * 4 3 2 34 34 H 1.08001 * 119.95481 * 0.02705 * 7 6 5 35 35 H 1.07998 * 119.93853 * 180.25526 * 8 7 6 36 36 H 1.08000 * 119.98192 * 179.72514 * 9 8 7 37 37 H 0.97000 * 119.99258 * 33.29510 * 11 10 9 38 38 H 1.09001 * 109.47092 * 300.00157 * 14 12 11 39 39 H 1.08997 * 109.46956 * 60.00052 * 14 12 11 40 40 H 1.09001 * 109.47177 * 299.99986 * 15 14 12 41 41 H 1.09004 * 109.47606 * 60.00264 * 15 14 12 42 42 H 0.96995 * 120.00222 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.06534 * 359.95918 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3936 2.9680 0.0010 7 6 6.2396 1.8675 0.0083 8 6 7.6095 2.0470 0.0040 9 6 8.1418 3.3220 0.0040 10 6 7.3002 4.4268 0.0020 11 7 7.8391 5.7181 0.0015 12 6 7.1976 6.7163 0.6406 13 8 6.2052 6.4779 1.2959 14 6 7.7135 8.1288 0.5412 15 6 6.8105 9.0598 1.3529 16 6 7.3268 10.4722 1.2540 17 1 8.2103 10.6845 0.6702 18 6 6.6706 11.4934 1.9078 19 7 5.5945 11.2349 2.6183 20 14 7.3109 13.2440 1.7859 21 1 7.3138 13.6720 0.3639 22 1 6.4338 14.1478 2.5725 23 1 8.6938 13.3039 2.3236 24 6 5.9237 4.2485 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9565 0.8899 31 1 1.6768 1.9564 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 5.8263 0.8697 0.0127 35 1 8.2655 1.1891 0.0055 36 1 9.2130 3.4597 0.0051 37 1 8.6744 5.8947 -0.4588 38 1 8.7287 8.1734 0.9353 39 1 7.7148 8.4425 -0.5026 40 1 5.7951 9.0153 0.9592 41 1 6.8096 8.7460 2.3968 42 1 5.1326 11.9534 3.0780 43 1 5.2670 5.1059 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292198070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:35 Heat of formation + Delta-G solvation = -97.096606 kcal Electronic energy + Delta-G solvation = -21986.195748 eV Core-core repulsion = 18608.829363 eV Total energy + Delta-G solvation = -3377.366385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69872 -40.61864 -38.57812 -36.15887 -35.62149 -35.42382 -33.12059 -31.72765 -30.46553 -29.81410 -27.73075 -25.19508 -24.40763 -23.54930 -22.43157 -21.97293 -21.15835 -19.49119 -18.86116 -17.68885 -17.35847 -17.17174 -17.05427 -16.74649 -16.44671 -16.29418 -15.68337 -15.09264 -14.86115 -14.55719 -14.33594 -14.31335 -14.12610 -13.88059 -13.41364 -13.26768 -13.06853 -12.78196 -12.69682 -12.52580 -12.41245 -12.04784 -11.96602 -11.94198 -11.84890 -11.66715 -11.51970 -11.33967 -11.23569 -10.77384 -10.56933 -9.44430 -9.03598 -8.18908 -6.33492 0.23168 0.45362 1.41763 1.46619 1.54286 1.61347 1.95245 2.30093 2.44131 2.81673 3.14093 3.78920 3.88594 3.91724 3.95626 4.11219 4.13152 4.27252 4.28051 4.33036 4.42998 4.44295 4.51237 4.58547 4.61777 4.75007 4.81966 4.89186 5.00260 5.04612 5.19017 5.29067 5.29197 5.33165 5.35983 5.41260 5.46861 5.49140 5.59545 5.82740 5.88867 6.15090 6.45559 6.48056 6.84730 7.19027 7.36957 8.93713 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002699 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.228319 B =10371.247781 C =11802.776310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.053 3.947 5 O -0.343 6.343 6 C 0.133 3.867 7 C -0.225 4.225 8 C -0.052 4.052 9 C -0.180 4.180 10 C 0.174 3.826 11 N -0.662 5.662 12 C 0.509 3.491 13 O -0.564 6.564 14 C -0.116 4.116 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.197 4.197 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.432 0.568 38 H 0.114 0.886 39 H 0.111 0.889 40 H -0.019 1.019 41 H -0.017 1.017 42 H 0.263 0.737 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -26.128 -9.546 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.021 4.021 5 O -0.258 6.258 6 C 0.087 3.913 7 C -0.244 4.244 8 C -0.070 4.070 9 C -0.201 4.201 10 C 0.079 3.921 11 N -0.310 5.310 12 C 0.299 3.701 13 O -0.441 6.441 14 C -0.155 4.155 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.218 4.218 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.272 0.728 38 H 0.132 0.868 39 H 0.129 0.871 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.645 -25.998 -8.986 27.556 hybrid contribution -0.123 1.273 0.198 1.294 sum 1.522 -24.725 -8.788 26.284 Atomic orbital electron populations 1.21778 0.95075 1.02458 1.01866 1.21408 0.96503 0.93946 1.03303 1.21627 0.92137 0.99176 1.02944 1.23117 0.95836 0.80450 1.02685 1.86065 1.19348 1.31754 1.88606 1.18892 0.82871 0.93663 0.95894 1.21505 0.94710 0.97963 1.10243 1.21198 0.94212 0.97355 0.94284 1.21175 1.00594 0.90788 1.07506 1.17710 0.91253 0.85499 0.97618 1.43555 1.27348 1.06186 1.53868 1.21702 0.82905 0.88486 0.76969 1.90706 1.27678 1.84665 1.41058 1.21676 1.02010 0.87961 1.03882 1.18706 0.93664 0.93643 0.93682 1.21684 1.12533 0.92910 1.30993 0.90255 1.26181 0.95025 1.04756 0.94679 1.70181 1.20277 1.34307 1.33138 0.85339 0.78422 0.77558 0.78720 1.18647 1.21471 1.18513 1.20301 0.95031 0.95849 1.10652 0.91278 0.93071 0.92755 0.90451 0.90869 0.92145 0.91533 0.90145 0.90874 0.82712 0.81174 0.82292 0.72822 0.86800 0.87109 1.00104 0.99897 0.92863 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.11 -1.32 5.93 30.60 0.18 -1.14 16 3 C -0.12 -2.10 5.58 30.60 0.17 -1.93 16 4 C 0.05 1.02 4.74 71.98 0.34 1.36 16 5 O -0.34 -10.34 10.13 -92.46 -0.94 -11.27 16 6 C 0.13 4.00 6.68 22.49 0.15 4.15 16 7 C -0.23 -4.75 9.04 22.39 0.20 -4.55 16 8 C -0.05 -0.92 10.03 22.24 0.22 -0.69 16 9 C -0.18 -3.76 9.96 22.41 0.22 -3.54 16 10 C 0.17 5.21 6.28 38.14 0.24 5.45 16 11 N -0.66 -19.25 5.34 -303.55 -1.62 -20.87 16 12 C 0.51 20.42 7.57 87.66 0.66 21.09 16 13 O -0.56 -28.96 13.67 -3.05 -0.04 -29.00 16 14 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 15 C 0.04 2.29 4.26 29.85 0.13 2.42 16 16 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 17 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 18 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 19 N -0.94 -60.51 13.29 21.45 0.28 -60.22 16 20 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C -0.20 -7.12 8.59 22.49 0.19 -6.92 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 33 H 0.07 1.19 7.65 -2.39 -0.02 1.17 16 34 H 0.16 2.24 6.29 -2.91 -0.02 2.23 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.43 8.35 8.82 -92.71 -0.82 7.53 16 38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 40 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 41 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.10 4.40 6.41 -2.91 -0.02 4.38 16 Total: -1.00 -82.86 360.56 4.18 -78.68 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.18 Total: 16.79 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 4.29 Total: -20.73 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.34 Total: -81.09 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.98 Total: -40.27 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -82.86 4.18 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292198070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.414 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds