Wall clock time and date at job start Tue Mar 31 2020 07:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 C 1.53003 * 109.46980 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47135 * 179.97438 * 4 3 2 6 6 C 1.35975 * 117.00055 * 179.97438 * 5 4 3 7 7 C 1.38555 * 120.07914 * 0.02562 * 6 5 4 8 8 C 1.38252 * 120.01225 * 179.97438 * 7 6 5 9 9 C 1.38274 * 120.17883 * 0.02562 * 8 7 6 10 10 C 1.38194 * 120.16605 * 359.97438 * 9 8 7 11 11 C 1.38731 * 119.98571 * 359.74085 * 10 9 8 12 12 N 1.40120 * 120.09124 * 180.27730 * 11 10 9 13 13 C 1.34779 * 120.00106 * 24.80645 * 12 11 10 14 14 O 1.21288 * 119.99856 * 5.53133 * 13 12 11 15 15 C 1.50704 * 119.99708 * 185.53308 * 13 12 11 16 16 C 1.53001 * 109.46697 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46965 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00247 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00148 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00046 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99897 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46961 * 90.00418 * 21 19 17 23 23 H 1.48501 * 109.47056 * 210.00206 * 21 19 17 24 24 H 1.48502 * 109.47226 * 330.00294 * 21 19 17 25 25 H 1.08998 * 109.47426 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47005 * 299.99958 * 1 2 3 27 27 H 1.09012 * 109.46980 * 59.99999 * 1 2 3 28 28 H 1.09008 * 109.46820 * 240.00050 * 2 1 3 29 29 H 1.08995 * 109.46717 * 120.00183 * 2 1 3 30 30 H 1.08999 * 109.47217 * 60.00172 * 3 2 1 31 31 H 1.08995 * 109.47545 * 299.99676 * 3 2 1 32 32 H 1.08999 * 109.47214 * 300.00194 * 4 3 2 33 33 H 1.08999 * 109.47005 * 60.00042 * 4 3 2 34 34 H 1.07993 * 119.99627 * 359.95285 * 7 6 5 35 35 H 1.07996 * 119.90624 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.91570 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.01209 * 180.02562 * 10 9 8 38 38 H 0.96997 * 119.99873 * 204.80460 * 12 11 10 39 39 H 1.09001 * 109.46997 * 299.99683 * 15 13 12 40 40 H 1.08994 * 109.47104 * 60.00095 * 15 13 12 41 41 H 1.09001 * 109.46838 * 299.99412 * 16 15 13 42 42 H 1.08996 * 109.47789 * 59.99518 * 16 15 13 43 43 H 0.97004 * 119.99380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 -0.0012 6 6 5.3944 2.9679 -0.0013 7 6 6.2399 1.8703 -0.0014 8 6 7.6103 2.0530 -0.0020 9 6 8.1413 3.3297 -0.0020 10 6 7.3048 4.4298 -0.0020 11 6 5.9286 4.2543 -0.0073 12 7 5.0784 5.3681 -0.0132 13 6 5.5137 6.5456 -0.5035 14 8 6.6037 6.6173 -1.0307 15 6 4.6461 7.7732 -0.3966 16 6 5.3697 8.9654 -1.0261 17 6 4.5025 10.1931 -0.9187 18 1 3.5321 10.1294 -0.4489 19 6 4.9478 11.3978 -1.4202 20 7 4.1911 12.4693 -1.3260 21 14 6.6265 11.5082 -2.2321 22 1 6.4921 11.2360 -3.6858 23 1 7.1841 12.8700 -2.0330 24 1 7.5378 10.5062 -1.6231 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 0.8891 33 1 3.9329 0.9288 -0.8909 34 1 5.8285 0.8718 -0.0006 35 1 8.2678 1.1963 -0.0016 36 1 9.2125 3.4676 -0.0021 37 1 7.7222 5.4258 -0.0024 38 1 4.1766 5.2916 0.3357 39 1 3.7064 7.6008 -0.9213 40 1 4.4428 7.9842 0.6532 41 1 6.3096 9.1380 -0.5018 42 1 5.5728 8.7542 -2.0759 43 1 4.5047 13.3169 -1.6786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292279835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:39 Heat of formation + Delta-G solvation = -70.036237 kcal Electronic energy + Delta-G solvation = -22379.442767 eV Core-core repulsion = 19003.249808 eV Total energy + Delta-G solvation = -3376.192960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73197 -39.28029 -37.49900 -35.42943 -34.55663 -33.53313 -31.44767 -30.45375 -29.97423 -28.79646 -26.09663 -24.61329 -22.89679 -22.08916 -21.58806 -20.85193 -19.67065 -18.40871 -17.32274 -17.04195 -16.67732 -16.24504 -15.57382 -15.17313 -14.98754 -14.89235 -14.29193 -14.11036 -13.96129 -13.56067 -13.34244 -13.29229 -12.74680 -12.57570 -12.47910 -12.16331 -11.82914 -11.68287 -11.50187 -11.42631 -11.27221 -11.20080 -10.98507 -10.86620 -10.37177 -10.18063 -10.06790 -9.78283 -9.25102 -9.18945 -8.59497 -8.51360 -7.73478 -6.03433 -4.02450 1.27617 1.37193 2.89397 2.97896 3.32783 3.37955 3.44585 3.54752 3.82510 4.44948 4.45792 4.50449 4.63309 4.77402 4.81351 4.83199 4.97324 5.08979 5.12682 5.31948 5.33114 5.33648 5.37145 5.38496 5.47896 5.62342 5.69854 5.78830 5.83726 5.89472 6.00006 6.04685 6.13893 6.22879 6.48587 6.59492 6.65306 6.83926 7.30022 7.34715 7.40529 7.64980 7.77455 8.44630 8.54115 8.99366 9.59314 11.09341 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.003241 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.423605 B = 8636.835415 C =10222.405929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.062 3.938 5 O -0.317 6.317 6 C 0.092 3.908 7 C -0.190 4.190 8 C -0.110 4.110 9 C -0.133 4.133 10 C -0.101 4.101 11 C 0.134 3.866 12 N -0.673 5.673 13 C 0.510 3.490 14 O -0.521 6.521 15 C -0.121 4.121 16 C 0.002 3.998 17 C -0.525 4.525 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.413 0.587 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -27.925 4.900 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.013 4.013 5 O -0.232 6.232 6 C 0.045 3.955 7 C -0.209 4.209 8 C -0.129 4.129 9 C -0.152 4.152 10 C -0.121 4.121 11 C 0.038 3.962 12 N -0.317 5.317 13 C 0.300 3.700 14 O -0.396 6.396 15 C -0.161 4.161 16 C -0.036 4.036 17 C -0.563 4.563 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.249 0.751 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.862 -27.439 4.479 27.815 hybrid contribution 0.420 -0.189 -0.308 0.554 sum -0.442 -27.628 4.171 27.944 Atomic orbital electron populations 1.21756 0.95120 1.01841 1.02272 1.21426 0.96507 0.95608 1.02297 1.21594 0.92487 0.97766 1.04014 1.22801 0.95329 0.81905 1.01246 1.85988 1.18662 1.29213 1.89294 1.18645 0.82569 0.92614 1.01722 1.20978 0.94215 0.97233 1.08499 1.20862 0.94151 0.97288 1.00575 1.20995 0.99886 0.91945 1.02381 1.21415 0.90595 1.01323 0.98773 1.17269 0.90563 0.84178 1.04154 1.43735 1.16941 1.08765 1.62292 1.21788 0.88057 0.84305 0.75838 1.90608 1.22371 1.85013 1.41657 1.21707 0.98992 0.91665 1.03700 1.19384 0.96247 0.91817 0.96189 1.21092 1.04169 0.91880 1.39194 0.90877 1.24971 0.97258 0.95605 0.95399 1.69913 1.37400 1.00152 1.46710 0.86793 0.85138 0.77314 0.80292 1.20237 1.21435 1.18513 0.92525 0.92457 0.92436 0.91733 0.91748 0.90669 0.90635 0.92173 0.92166 0.85529 0.86025 0.85691 0.82831 0.75074 0.89262 0.89109 0.95713 0.96160 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.66 5.93 -26.73 -0.16 -0.82 16 3 C -0.12 -0.85 5.58 -26.73 -0.15 -1.00 16 4 C 0.06 0.51 4.74 37.16 0.18 0.69 16 5 O -0.32 -3.73 9.55 -19.66 -0.19 -3.91 16 6 C 0.09 1.19 6.70 -39.07 -0.26 0.93 16 7 C -0.19 -2.09 9.04 -39.46 -0.36 -2.45 16 8 C -0.11 -1.18 10.04 -39.56 -0.40 -1.58 16 9 C -0.13 -1.66 10.04 -39.58 -0.40 -2.05 16 10 C -0.10 -1.54 8.72 -39.42 -0.34 -1.88 16 11 C 0.13 2.03 6.45 -83.49 -0.54 1.49 16 12 N -0.67 -10.25 5.29 -9.74 -0.05 -10.30 16 13 C 0.51 9.45 7.64 -10.98 -0.08 9.37 16 14 O -0.52 -11.29 13.15 5.55 0.07 -11.22 16 15 C -0.12 -2.34 5.64 -27.88 -0.16 -2.49 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 17 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 21 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 34 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.15 2.64 5.79 -52.49 -0.30 2.34 16 38 H 0.41 5.27 8.34 -40.82 -0.34 4.93 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 42 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -33.54 355.19 -8.30 -41.84 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.77 Total: 1.26 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.82 Total: -13.68 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.72 Total: -37.54 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.11 Total: -15.13 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.54 -8.30 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292279835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.192 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds