Wall clock time and date at job start Tue Mar 31 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 C 1.53003 * 109.46980 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47135 * 179.97438 * 4 3 2 6 6 C 1.35975 * 117.00055 * 179.97438 * 5 4 3 7 7 C 1.38555 * 120.07914 * 0.02562 * 6 5 4 8 8 C 1.38252 * 120.01225 * 179.97438 * 7 6 5 9 9 C 1.38274 * 120.17883 * 0.02562 * 8 7 6 10 10 C 1.38194 * 120.16605 * 359.97438 * 9 8 7 11 11 C 1.38731 * 119.98571 * 359.74085 * 10 9 8 12 12 N 1.40120 * 120.09124 * 180.27730 * 11 10 9 13 13 C 1.34779 * 120.00106 * 24.80645 * 12 11 10 14 14 O 1.21288 * 119.99856 * 5.53133 * 13 12 11 15 15 C 1.50704 * 119.99708 * 185.53308 * 13 12 11 16 16 C 1.53001 * 109.46697 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46965 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00247 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00148 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00046 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99897 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46961 * 90.00418 * 21 19 17 23 23 H 1.48501 * 109.47056 * 210.00206 * 21 19 17 24 24 H 1.48502 * 109.47226 * 330.00294 * 21 19 17 25 25 H 1.08998 * 109.47426 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47005 * 299.99958 * 1 2 3 27 27 H 1.09012 * 109.46980 * 59.99999 * 1 2 3 28 28 H 1.09008 * 109.46820 * 240.00050 * 2 1 3 29 29 H 1.08995 * 109.46717 * 120.00183 * 2 1 3 30 30 H 1.08999 * 109.47217 * 60.00172 * 3 2 1 31 31 H 1.08995 * 109.47545 * 299.99676 * 3 2 1 32 32 H 1.08999 * 109.47214 * 300.00194 * 4 3 2 33 33 H 1.08999 * 109.47005 * 60.00042 * 4 3 2 34 34 H 1.07993 * 119.99627 * 359.95285 * 7 6 5 35 35 H 1.07996 * 119.90624 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.91570 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.01209 * 180.02562 * 10 9 8 38 38 H 0.96997 * 119.99873 * 204.80460 * 12 11 10 39 39 H 1.09001 * 109.46997 * 299.99683 * 15 13 12 40 40 H 1.08994 * 109.47104 * 60.00095 * 15 13 12 41 41 H 1.09001 * 109.46838 * 299.99412 * 16 15 13 42 42 H 1.08996 * 109.47789 * 59.99518 * 16 15 13 43 43 H 0.97004 * 119.99380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 -0.0012 6 6 5.3944 2.9679 -0.0013 7 6 6.2399 1.8703 -0.0014 8 6 7.6103 2.0530 -0.0020 9 6 8.1413 3.3297 -0.0020 10 6 7.3048 4.4298 -0.0020 11 6 5.9286 4.2543 -0.0073 12 7 5.0784 5.3681 -0.0132 13 6 5.5137 6.5456 -0.5035 14 8 6.6037 6.6173 -1.0307 15 6 4.6461 7.7732 -0.3966 16 6 5.3697 8.9654 -1.0261 17 6 4.5025 10.1931 -0.9187 18 1 3.5321 10.1294 -0.4489 19 6 4.9478 11.3978 -1.4202 20 7 4.1911 12.4693 -1.3260 21 14 6.6265 11.5082 -2.2321 22 1 6.4921 11.2360 -3.6858 23 1 7.1841 12.8700 -2.0330 24 1 7.5378 10.5062 -1.6231 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 0.8891 33 1 3.9329 0.9288 -0.8909 34 1 5.8285 0.8718 -0.0006 35 1 8.2678 1.1963 -0.0016 36 1 9.2125 3.4676 -0.0021 37 1 7.7222 5.4258 -0.0024 38 1 4.1766 5.2916 0.3357 39 1 3.7064 7.6008 -0.9213 40 1 4.4428 7.9842 0.6532 41 1 6.3096 9.1380 -0.5018 42 1 5.5728 8.7542 -2.0759 43 1 4.5047 13.3169 -1.6786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292279835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:38 Heat of formation + Delta-G solvation = -90.424329 kcal Electronic energy + Delta-G solvation = -22380.326861 eV Core-core repulsion = 19003.249808 eV Total energy + Delta-G solvation = -3377.077054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83086 -40.45215 -38.44172 -36.02433 -35.80437 -35.53147 -33.41270 -31.26879 -31.00082 -29.67853 -27.91435 -25.33231 -24.17004 -22.97952 -22.70531 -21.87414 -21.12038 -19.46408 -19.09910 -18.14398 -17.78107 -17.34942 -16.80665 -16.39143 -16.18192 -15.84320 -15.66106 -15.36878 -14.89376 -14.76878 -14.61369 -14.47804 -14.13791 -13.89016 -13.45286 -13.20831 -13.01002 -12.88937 -12.63834 -12.44485 -12.13043 -12.00323 -11.99423 -11.87831 -11.83007 -11.77292 -11.56105 -11.42119 -11.41370 -10.78745 -10.69625 -9.58271 -8.78028 -8.32158 -6.35355 0.25762 0.41614 1.33291 1.35029 1.49946 1.60188 1.99113 2.19775 2.34501 2.83297 3.03508 3.74963 3.83608 3.94238 3.97227 4.06581 4.17068 4.25112 4.32408 4.36633 4.43291 4.44624 4.48859 4.58024 4.63655 4.80246 4.87347 4.93487 4.94941 5.04438 5.14126 5.25267 5.29246 5.33290 5.33370 5.41505 5.44722 5.49871 5.57980 5.61240 5.85005 6.22003 6.40186 6.44394 6.70894 7.13165 7.29928 8.83523 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.003241 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.423605 B = 8636.835415 C =10222.405929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.055 3.945 5 O -0.331 6.331 6 C 0.092 3.908 7 C -0.187 4.187 8 C -0.097 4.097 9 C -0.141 4.141 10 C -0.123 4.123 11 C 0.098 3.902 12 N -0.657 5.657 13 C 0.514 3.486 14 O -0.559 6.559 15 C -0.114 4.114 16 C 0.006 3.994 17 C -0.530 4.530 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.260 1.260 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.424 0.576 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 -31.208 5.015 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.246 6.246 6 C 0.045 3.955 7 C -0.205 4.205 8 C -0.115 4.115 9 C -0.160 4.160 10 C -0.143 4.143 11 C 0.004 3.996 12 N -0.302 5.302 13 C 0.304 3.696 14 O -0.437 6.437 15 C -0.154 4.154 16 C -0.032 4.032 17 C -0.568 4.568 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.184 1.184 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.143 0.857 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.239 -30.768 4.617 31.114 hybrid contribution 0.135 0.694 -0.288 0.763 sum -0.104 -30.075 4.329 30.385 Atomic orbital electron populations 1.21775 0.95189 1.02289 1.01950 1.21409 0.96407 0.94492 1.03085 1.21592 0.91908 0.98786 1.03310 1.23081 0.95808 0.80495 1.02509 1.85981 1.18023 1.31511 1.89077 1.18721 0.83495 0.92225 1.01034 1.21397 0.94186 0.98042 1.06925 1.21299 0.94682 0.97574 0.97968 1.21243 1.00564 0.91997 1.02167 1.21331 0.91353 1.01104 1.00551 1.17467 0.90594 0.84796 1.06792 1.43404 1.17438 1.08084 1.61270 1.21431 0.87271 0.84976 0.75882 1.90601 1.23733 1.85683 1.43691 1.21517 0.99035 0.90409 1.04393 1.19223 0.95563 0.92482 0.95911 1.21406 1.03753 0.93413 1.38190 0.93154 1.25808 1.00952 0.95424 0.96251 1.70026 1.39352 1.00860 1.48155 0.85819 0.80699 0.77644 0.79500 1.19429 1.20335 1.18394 0.91698 0.92660 0.92943 0.91104 0.90752 0.91105 0.91692 0.90487 0.91112 0.82296 0.82357 0.84018 0.85652 0.73810 0.87731 0.87523 0.96828 0.97135 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.12 -1.45 5.58 30.59 0.17 -1.28 16 4 C 0.06 0.76 4.74 71.98 0.34 1.10 16 5 O -0.33 -7.15 9.55 -93.27 -0.89 -8.04 16 6 C 0.09 2.23 6.70 22.60 0.15 2.38 16 7 C -0.19 -3.44 9.04 22.35 0.20 -3.24 16 8 C -0.10 -1.74 10.04 22.28 0.22 -1.51 16 9 C -0.14 -3.27 10.04 22.27 0.22 -3.05 16 10 C -0.12 -3.77 8.72 22.38 0.20 -3.58 16 11 C 0.10 2.93 6.45 38.19 0.25 3.18 16 12 N -0.66 -19.99 5.29 -303.13 -1.60 -21.59 16 13 C 0.51 19.30 7.64 87.66 0.67 19.97 16 14 O -0.56 -24.85 13.15 -3.05 -0.04 -24.89 16 15 C -0.11 -4.42 5.64 29.85 0.17 -4.25 16 16 C 0.01 0.31 3.33 29.85 0.10 0.41 16 17 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 18 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 19 C 0.01 0.80 5.47 84.65 0.46 1.26 16 20 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 21 Si 0.94 47.04 27.47 68.60 1.88 48.93 16 22 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.26 -12.87 6.54 99.48 0.65 -12.22 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 33 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 34 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.13 4.53 5.79 -2.91 -0.02 4.52 16 38 H 0.42 10.61 8.34 -92.71 -0.77 9.83 16 39 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.01 0.70 7.15 -2.39 -0.02 0.68 16 42 H 0.01 0.53 7.53 -2.39 -0.02 0.52 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -73.74 355.19 4.12 -69.63 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.17 Total: 15.82 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 4.30 Total: -20.66 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -1.30 Total: -80.77 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.93 Total: -32.94 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.88 Total: 48.93 kcal Total: -73.74 4.12 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292279835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.798 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds