Wall clock time and date at job start Tue Mar 31 2020 07:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.52998 * 109.46880 * 120.00007 * 2 1 3 5 5 O 1.42906 * 109.46905 * 175.00147 * 4 2 1 6 6 C 1.35895 * 116.99880 * 180.02562 * 5 4 2 7 7 C 1.38809 * 120.02191 * 359.72453 * 6 5 4 8 8 C 1.38168 * 120.08711 * 179.74779 * 7 6 5 9 9 C 1.38172 * 120.11913 * 0.54825 * 8 7 6 10 10 C 1.38886 * 120.04161 * 359.70512 * 9 8 7 11 11 N 1.39920 * 120.04136 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00085 * 213.29090 * 11 10 9 13 13 O 1.21291 * 119.99894 * 5.27640 * 12 11 10 14 14 C 1.50702 * 120.00243 * 185.27030 * 12 11 10 15 15 C 1.52996 * 109.47075 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47269 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99686 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00281 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46978 * 60.00314 * 20 18 16 22 22 H 1.48504 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47010 * 300.00237 * 20 18 16 24 24 C 1.38586 * 120.01983 * 179.97438 * 6 5 4 25 25 H 1.09003 * 109.47161 * 300.00003 * 1 2 3 26 26 H 1.08997 * 109.46729 * 59.99738 * 1 2 3 27 27 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47200 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.46894 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47190 * 299.99864 * 3 2 1 31 31 H 1.09003 * 109.47219 * 60.00032 * 3 2 1 32 32 H 1.09006 * 109.47167 * 295.00012 * 4 2 1 33 33 H 1.09000 * 109.47146 * 54.99920 * 4 2 1 34 34 H 1.07998 * 119.95472 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.94350 * 180.25389 * 8 7 6 36 36 H 1.08004 * 119.97584 * 179.72408 * 9 8 7 37 37 H 0.97006 * 120.00068 * 33.29051 * 11 10 9 38 38 H 1.08990 * 109.47289 * 300.00356 * 14 12 11 39 39 H 1.09003 * 109.46550 * 60.00988 * 14 12 11 40 40 H 1.09005 * 109.47576 * 300.00145 * 15 14 12 41 41 H 1.09002 * 109.47598 * 60.00365 * 15 14 12 42 42 H 0.97000 * 119.99613 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.05874 * 359.96036 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0805 -1.4432 2.2328 7 6 3.3293 -1.9371 3.2905 8 6 3.9539 -2.5717 4.3469 9 6 5.3290 -2.7068 4.3594 10 6 6.0861 -2.2100 3.3064 11 7 7.4785 -2.3473 3.3189 12 6 8.2547 -1.3929 2.7684 13 8 7.7536 -0.3714 2.3482 14 6 9.7452 -1.5948 2.6751 15 6 10.3852 -0.3717 2.0154 16 6 11.8756 -0.5739 1.9215 17 1 12.3217 -1.4840 2.2947 18 6 12.6697 0.4024 1.3582 19 7 12.1264 1.5104 0.9034 20 14 14.5173 0.1521 1.2425 21 1 14.8030 -1.0565 0.4283 22 1 15.1385 1.3392 0.6020 23 1 15.0791 -0.0251 2.6056 24 6 5.4598 -1.5777 2.2414 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 2.2547 -1.8291 3.2854 35 1 3.3669 -2.9587 5.1666 36 1 5.8153 -3.1994 5.1885 37 1 7.8852 -3.1294 3.7238 38 1 10.1576 -1.7250 3.6756 39 1 9.9549 -2.4819 2.0773 40 1 9.9729 -0.2411 1.0148 41 1 10.1756 0.5152 2.6134 42 1 12.6852 2.1974 0.5074 43 1 6.0461 -1.1910 1.4211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292809143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:42 Heat of formation + Delta-G solvation = -72.510821 kcal Electronic energy + Delta-G solvation = -22308.280900 eV Core-core repulsion = 18931.980634 eV Total energy + Delta-G solvation = -3376.300266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51263 -39.43148 -37.55413 -35.51431 -34.18160 -33.50465 -31.21749 -30.32367 -29.14940 -27.40913 -26.75546 -25.73195 -23.20072 -22.29266 -21.33391 -20.36052 -19.65182 -18.44463 -17.03814 -16.45955 -16.08046 -16.03906 -15.73032 -15.45319 -15.04954 -14.48039 -14.44784 -14.02860 -13.68181 -13.32687 -13.24309 -12.98723 -12.73065 -12.46050 -12.25846 -12.18707 -11.83151 -11.52583 -11.44911 -11.33013 -11.19007 -10.92877 -10.85497 -10.78786 -10.63635 -10.08112 -9.98946 -9.70454 -9.24487 -9.08574 -8.34073 -8.29745 -7.97018 -5.97011 -4.01898 1.32199 1.47665 2.97708 3.09826 3.34204 3.38566 3.40036 3.46877 3.87252 4.46501 4.48690 4.54278 4.78821 4.82192 4.97399 5.12205 5.13208 5.20100 5.25448 5.36677 5.37898 5.39341 5.42965 5.58065 5.58520 5.64617 5.78660 5.92393 6.01393 6.14091 6.14999 6.15350 6.28722 6.31086 6.45485 6.48353 6.83267 6.98570 7.45905 7.68297 7.72447 7.82464 8.04695 8.35149 8.59712 9.05899 9.61769 11.13865 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002911 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.324105 B = 9617.949093 C =10944.723194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.064 3.936 5 O -0.309 6.309 6 C 0.150 3.850 7 C -0.235 4.235 8 C -0.063 4.063 9 C -0.191 4.191 10 C 0.198 3.802 11 N -0.686 5.686 12 C 0.507 3.493 13 O -0.507 6.507 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.159 4.159 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.824 -8.975 4.028 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.011 4.011 5 O -0.223 6.223 6 C 0.104 3.896 7 C -0.254 4.254 8 C -0.081 4.081 9 C -0.212 4.212 10 C 0.103 3.897 11 N -0.332 5.332 12 C 0.297 3.703 13 O -0.380 6.380 14 C -0.168 4.168 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.962 -7.931 3.415 24.532 hybrid contribution 1.024 -0.550 0.360 1.217 sum -21.938 -8.481 3.776 23.822 Atomic orbital electron populations 1.21780 0.93933 1.02038 1.02475 1.21133 0.95615 0.97226 0.97473 1.21835 1.02474 0.94706 1.01616 1.22891 0.78956 1.00118 0.99152 1.86089 1.21326 1.73362 1.41497 1.18720 0.91682 0.92263 0.86926 1.21115 0.99817 1.07715 0.96787 1.20629 0.93777 0.96594 0.97133 1.20790 0.94156 1.07921 0.98350 1.17480 0.83446 0.96221 0.92585 1.43992 1.03740 1.24969 1.60508 1.21883 0.90787 0.82002 0.75626 1.90712 1.75530 1.26846 1.44911 1.21916 0.87302 1.04425 1.03206 1.18918 0.94197 0.90643 0.96357 1.21158 0.92077 1.03294 1.40207 0.92590 1.25025 0.98706 0.95202 0.95419 1.69986 1.35538 1.07268 1.39949 0.86639 0.85414 0.77540 0.78258 1.20226 1.21272 1.20239 1.20377 0.91561 1.05716 1.00323 0.92385 0.91721 0.92451 0.90012 0.91435 0.92499 0.92758 0.92066 0.92176 0.85844 0.85719 0.85710 0.75374 0.89852 0.89714 0.95695 0.95709 0.92842 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.84 3.16 -90.62 -0.29 -1.12 16 3 C -0.15 -1.42 9.09 37.16 0.34 -1.08 16 4 C 0.06 0.63 4.12 37.16 0.15 0.79 16 5 O -0.31 -4.36 9.67 -19.41 -0.19 -4.55 16 6 C 0.15 2.20 6.68 -39.24 -0.26 1.94 16 7 C -0.23 -2.79 9.04 -39.40 -0.36 -3.14 16 8 C -0.06 -0.68 10.03 -39.63 -0.40 -1.08 16 9 C -0.19 -2.31 9.96 -39.37 -0.39 -2.70 16 10 C 0.20 2.99 6.28 -83.72 -0.53 2.46 16 11 N -0.69 -10.09 5.34 -9.88 -0.05 -10.15 16 12 C 0.51 9.76 7.57 -10.99 -0.08 9.68 16 13 O -0.51 -11.94 13.67 5.55 0.08 -11.87 16 14 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 15 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 16 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.16 -2.68 8.59 -39.25 -0.34 -3.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.12 1.15 6.29 -52.49 -0.33 0.82 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.41 4.42 8.82 -40.82 -0.36 4.06 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 43 H 0.14 2.82 6.42 -52.49 -0.34 2.48 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.32 359.17 -8.37 -42.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.84 Total: 1.87 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.49 Total: -13.34 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.68 Total: -36.83 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.32 -8.37 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292809143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.820 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds