Wall clock time and date at job start Tue Mar 31 2020 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.52998 * 109.46880 * 120.00007 * 2 1 3 5 5 O 1.42906 * 109.46905 * 175.00147 * 4 2 1 6 6 C 1.35895 * 116.99880 * 180.02562 * 5 4 2 7 7 C 1.38809 * 120.02191 * 359.72453 * 6 5 4 8 8 C 1.38168 * 120.08711 * 179.74779 * 7 6 5 9 9 C 1.38172 * 120.11913 * 0.54825 * 8 7 6 10 10 C 1.38886 * 120.04161 * 359.70512 * 9 8 7 11 11 N 1.39920 * 120.04136 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00085 * 213.29090 * 11 10 9 13 13 O 1.21291 * 119.99894 * 5.27640 * 12 11 10 14 14 C 1.50702 * 120.00243 * 185.27030 * 12 11 10 15 15 C 1.52996 * 109.47075 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47269 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99686 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00281 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46978 * 60.00314 * 20 18 16 22 22 H 1.48504 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47010 * 300.00237 * 20 18 16 24 24 C 1.38586 * 120.01983 * 179.97438 * 6 5 4 25 25 H 1.09003 * 109.47161 * 300.00003 * 1 2 3 26 26 H 1.08997 * 109.46729 * 59.99738 * 1 2 3 27 27 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47200 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.46894 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47190 * 299.99864 * 3 2 1 31 31 H 1.09003 * 109.47219 * 60.00032 * 3 2 1 32 32 H 1.09006 * 109.47167 * 295.00012 * 4 2 1 33 33 H 1.09000 * 109.47146 * 54.99920 * 4 2 1 34 34 H 1.07998 * 119.95472 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.94350 * 180.25389 * 8 7 6 36 36 H 1.08004 * 119.97584 * 179.72408 * 9 8 7 37 37 H 0.97006 * 120.00068 * 33.29051 * 11 10 9 38 38 H 1.08990 * 109.47289 * 300.00356 * 14 12 11 39 39 H 1.09003 * 109.46550 * 60.00988 * 14 12 11 40 40 H 1.09005 * 109.47576 * 300.00145 * 15 14 12 41 41 H 1.09002 * 109.47598 * 60.00365 * 15 14 12 42 42 H 0.97000 * 119.99613 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.05874 * 359.96036 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0805 -1.4432 2.2328 7 6 3.3293 -1.9371 3.2905 8 6 3.9539 -2.5717 4.3469 9 6 5.3290 -2.7068 4.3594 10 6 6.0861 -2.2100 3.3064 11 7 7.4785 -2.3473 3.3189 12 6 8.2547 -1.3929 2.7684 13 8 7.7536 -0.3714 2.3482 14 6 9.7452 -1.5948 2.6751 15 6 10.3852 -0.3717 2.0154 16 6 11.8756 -0.5739 1.9215 17 1 12.3217 -1.4840 2.2947 18 6 12.6697 0.4024 1.3582 19 7 12.1264 1.5104 0.9034 20 14 14.5173 0.1521 1.2425 21 1 14.8030 -1.0565 0.4283 22 1 15.1385 1.3392 0.6020 23 1 15.0791 -0.0251 2.6056 24 6 5.4598 -1.5777 2.2414 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 2.2547 -1.8291 3.2854 35 1 3.3669 -2.9587 5.1666 36 1 5.8153 -3.1994 5.1885 37 1 7.8852 -3.1294 3.7238 38 1 10.1576 -1.7250 3.6756 39 1 9.9549 -2.4819 2.0773 40 1 9.9729 -0.2411 1.0148 41 1 10.1756 0.5152 2.6134 42 1 12.6852 2.1974 0.5074 43 1 6.0461 -1.1910 1.4211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292809143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:41 Heat of formation + Delta-G solvation = -94.606690 kcal Electronic energy + Delta-G solvation = -22309.239049 eV Core-core repulsion = 18931.980634 eV Total energy + Delta-G solvation = -3377.258415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70103 -40.65473 -38.66529 -36.36793 -35.61835 -35.39190 -33.11999 -31.42231 -30.34443 -28.11080 -27.80367 -27.38091 -24.63447 -23.54883 -22.68869 -21.38826 -20.94942 -19.53307 -18.86173 -17.70878 -17.30950 -17.13945 -16.92766 -16.72190 -16.44792 -16.33009 -15.39028 -15.11464 -14.87220 -14.59003 -14.33602 -14.14814 -14.14035 -13.80499 -13.41895 -13.28107 -13.04632 -12.78924 -12.71070 -12.52667 -12.39387 -12.34817 -12.07618 -11.93645 -11.67584 -11.66458 -11.57736 -11.33878 -11.23413 -10.77123 -10.56918 -9.43644 -9.02832 -8.18903 -6.33455 0.23590 0.46046 1.41693 1.46514 1.54170 1.61529 1.96136 2.31930 2.44262 2.82156 3.14162 3.73260 3.82878 3.91498 3.93849 4.08806 4.12832 4.27185 4.29540 4.43830 4.44257 4.51160 4.52638 4.58393 4.64639 4.72888 4.79152 4.93177 4.98445 5.04139 5.16610 5.28258 5.31543 5.34395 5.36718 5.37848 5.47144 5.49422 5.59608 5.82797 5.89382 6.15163 6.45788 6.49270 6.84725 7.19148 7.37017 8.93711 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002911 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.324105 B = 9617.949093 C =10944.723194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.057 3.943 5 O -0.338 6.338 6 C 0.134 3.866 7 C -0.226 4.226 8 C -0.052 4.052 9 C -0.181 4.181 10 C 0.174 3.826 11 N -0.662 5.662 12 C 0.509 3.491 13 O -0.564 6.564 14 C -0.116 4.116 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.197 4.197 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.432 0.568 38 H 0.114 0.886 39 H 0.111 0.889 40 H -0.020 1.020 41 H -0.017 1.017 42 H 0.263 0.737 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.931 -11.786 6.435 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.017 4.017 5 O -0.253 6.253 6 C 0.088 3.912 7 C -0.245 4.245 8 C -0.071 4.071 9 C -0.201 4.201 10 C 0.079 3.921 11 N -0.310 5.310 12 C 0.299 3.701 13 O -0.441 6.441 14 C -0.155 4.155 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.218 4.218 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.272 0.728 38 H 0.132 0.868 39 H 0.129 0.871 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.092 -10.817 5.856 27.050 hybrid contribution 1.218 0.328 -0.392 1.321 sum -22.874 -10.489 5.465 25.750 Atomic orbital electron populations 1.21740 0.91423 1.03100 1.03250 1.21180 0.97526 0.96055 0.96709 1.21832 1.00269 0.96006 1.02549 1.23196 0.76932 1.01554 1.00060 1.86073 1.23725 1.73518 1.41939 1.18884 0.91208 0.92952 0.88153 1.21497 1.01199 1.06184 0.95620 1.21193 0.93566 0.94772 0.97527 1.21168 0.94701 1.06566 0.97709 1.17706 0.83243 0.97617 0.93497 1.43555 1.03806 1.24449 1.59149 1.21703 0.90906 0.82052 0.75415 1.90707 1.76310 1.29444 1.47625 1.21674 0.87550 1.01790 1.04504 1.18701 0.94709 0.92340 0.93912 1.21681 0.92692 1.04035 1.39727 0.90283 1.26172 1.04855 0.94710 0.94848 1.70182 1.37844 1.08601 1.41254 0.85349 0.77992 0.77703 0.79047 1.18643 1.21457 1.18524 1.20287 0.92836 1.08122 1.00571 0.91513 0.91067 0.91231 0.91052 0.94835 0.91339 0.92064 0.91017 0.90171 0.82801 0.81236 0.82343 0.72837 0.86820 0.87131 1.00111 0.99895 0.92867 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.10 -1.66 3.16 -10.79 -0.03 -1.70 16 3 C -0.15 -2.99 9.09 71.98 0.65 -2.34 16 4 C 0.06 1.09 4.12 71.98 0.30 1.39 16 5 O -0.34 -10.08 9.67 -92.37 -0.89 -10.97 16 6 C 0.13 4.03 6.68 22.49 0.15 4.18 16 7 C -0.23 -4.79 9.04 22.39 0.20 -4.58 16 8 C -0.05 -0.92 10.03 22.24 0.22 -0.70 16 9 C -0.18 -3.80 9.96 22.41 0.22 -3.58 16 10 C 0.17 5.22 6.28 38.14 0.24 5.46 16 11 N -0.66 -19.28 5.34 -303.55 -1.62 -20.91 16 12 C 0.51 20.44 7.57 87.66 0.66 21.10 16 13 O -0.56 -28.95 13.67 -3.06 -0.04 -28.99 16 14 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 15 C 0.04 2.31 4.26 29.85 0.13 2.44 16 16 C -0.54 -31.08 9.11 25.60 0.23 -30.84 16 17 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 18 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 19 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 20 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.20 -7.10 8.59 22.49 0.19 -6.91 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.03 0.88 7.82 -2.38 -0.02 0.86 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.20 7.65 -2.38 -0.02 1.18 16 33 H 0.08 1.19 7.67 -2.39 -0.02 1.17 16 34 H 0.15 2.26 6.29 -2.91 -0.02 2.24 16 35 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.43 8.38 8.82 -92.70 -0.82 7.57 16 38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 40 H -0.02 -1.26 8.10 -2.38 -0.02 -1.27 16 41 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 42 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.10 4.38 6.42 -2.91 -0.02 4.37 16 Total: -1.00 -82.78 359.17 4.40 -78.38 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.18 Total: 17.45 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.46 Total: -21.39 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.34 Total: -81.10 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.94 Total: -39.97 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -82.78 4.40 -78.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292809143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.222 kcal (2) G-P(sol) polarization free energy of solvation -82.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds