Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00188 * 2 1 4 4 C 1.53000 * 109.47286 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46999 * 60.00013 * 4 3 2 6 6 C 1.52997 * 109.46972 * 299.99851 * 4 3 2 7 7 C 1.52998 * 109.47045 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.46991 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00102 * 180.02562 * 8 7 4 10 10 O 1.21542 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99863 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02945 * 359.97438 * 11 9 8 13 13 C 1.38323 * 120.36046 * 180.02562 * 12 11 9 14 14 C 1.37749 * 120.41447 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.03994 * 359.97438 * 14 13 12 16 16 C 1.41435 * 120.17888 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99792 * 24.39006 * 16 15 14 18 18 C 1.39937 * 120.00029 * 204.38102 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.86125 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.85585 * 18 16 15 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46871 * 120.00054 * 20 18 16 23 23 H 1.48498 * 109.47266 * 240.00165 * 20 18 16 24 24 C 1.38999 * 120.02296 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47367 * 300.00439 * 1 2 3 26 26 H 1.09002 * 109.46497 * 60.00112 * 1 2 3 27 27 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47502 * 59.99337 * 3 2 1 29 29 H 1.09003 * 109.46967 * 299.99475 * 3 2 1 30 30 H 1.08996 * 109.47373 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47087 * 299.99798 * 5 4 3 32 32 H 1.08999 * 109.47511 * 59.99563 * 5 4 3 33 33 H 1.08995 * 109.47276 * 299.99440 * 6 4 3 34 34 H 1.09002 * 109.47246 * 60.00120 * 6 4 3 35 35 H 1.09009 * 109.46726 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47369 * 60.00459 * 7 4 3 37 37 H 1.08995 * 109.47621 * 300.00216 * 7 4 3 38 38 H 0.97004 * 120.00290 * 359.97438 * 8 7 4 39 39 H 1.08001 * 119.81453 * 359.97438 * 12 11 9 40 40 H 1.08002 * 119.79194 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.98284 * 179.97438 * 14 13 12 42 42 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.20633 * 359.70283 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4256 1.2502 7 6 4.1577 2.5823 0.0000 8 7 5.6182 2.4666 0.0000 9 6 6.3822 3.5769 0.0000 10 8 5.8595 4.6742 -0.0005 11 6 7.8564 3.4601 0.0006 12 6 8.4587 2.1971 0.0017 13 6 9.8370 2.0799 0.0027 14 6 10.6325 3.2044 0.0022 15 6 10.0448 4.4833 0.0000 16 6 10.8588 5.6399 -0.0010 17 1 11.8665 5.5906 -0.3866 18 6 10.3585 6.8481 0.4972 19 7 9.3025 6.8500 1.2695 20 14 11.1986 8.4582 0.0598 21 1 12.3624 8.1858 -0.8215 22 1 10.2377 9.3414 -0.6487 23 1 11.6633 9.1274 1.3014 24 6 8.6448 4.6048 0.0000 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 5.0739 0.3386 -1.2476 31 1 3.5441 -0.5707 -1.2482 32 1 3.6661 0.9657 -2.1385 33 1 3.6645 0.9667 2.1399 34 1 3.5430 -0.5702 1.2502 35 1 5.0730 0.3391 1.2504 36 1 3.8359 3.1237 0.8895 37 1 3.8365 3.1227 -0.8904 38 1 6.0354 1.5908 0.0008 39 1 7.8441 1.3091 0.0025 40 1 10.2922 1.1005 0.0031 41 1 11.7079 3.1047 0.0035 42 1 8.9555 7.6875 1.6145 43 1 8.1843 5.5817 -0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293881566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -80.250913 kcal Electronic energy + Delta-G solvation = -22953.344707 eV Core-core repulsion = 19576.708805 eV Total energy + Delta-G solvation = -3376.635901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62456 -38.54232 -37.08921 -36.18443 -33.76991 -32.80947 -30.14354 -29.42298 -27.64354 -27.32460 -26.76342 -25.43418 -24.91967 -22.17121 -20.93328 -19.59797 -19.16604 -17.76072 -16.77152 -16.09347 -16.06898 -15.70624 -15.05197 -14.90880 -14.86281 -14.61056 -13.82213 -13.71310 -13.41245 -13.36052 -13.08549 -12.69065 -12.63104 -12.46511 -11.94098 -11.81410 -11.79438 -11.61868 -11.16423 -11.08101 -10.96383 -10.92141 -10.73817 -10.67616 -10.47760 -10.01521 -9.88888 -9.68049 -9.21585 -9.01157 -8.62498 -7.61935 -7.51359 -6.79709 -4.40711 2.22546 2.81362 3.08300 3.13150 3.15477 3.33356 3.88553 3.92476 3.94244 4.60250 4.62514 4.66079 4.77381 5.04572 5.06413 5.17277 5.34077 5.34372 5.38530 5.60141 5.61132 5.65215 5.78214 5.78931 5.90760 5.98993 5.99322 6.10786 6.25371 6.26376 6.28275 6.72876 6.84453 6.93360 6.99819 7.03228 7.21994 7.39107 7.71088 7.77167 7.93679 8.11047 8.20270 8.51564 8.80971 8.84283 8.97484 10.14938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003191 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.882043 B = 8773.732807 C = 9480.612498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.074 3.926 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.139 4.139 7 C 0.133 3.867 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.547 6.547 11 C -0.127 4.127 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.098 3.902 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.092 4.092 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.399 0.601 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.284 0.716 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 -10.522 -1.687 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.003 4.003 4 C -0.074 4.074 5 C -0.196 4.196 6 C -0.196 4.196 7 C 0.008 3.992 8 N -0.387 5.387 9 C 0.354 3.646 10 O -0.425 6.425 11 C -0.131 4.131 12 C -0.238 4.238 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.095 3.905 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.251 -9.729 -1.538 16.511 hybrid contribution 0.224 0.531 -0.031 0.577 sum -13.028 -9.198 -1.569 16.024 Atomic orbital electron populations 1.22725 0.81231 1.02599 0.99950 1.87853 1.19349 1.27778 1.95398 1.22453 0.92735 0.84612 1.00501 1.20784 0.93309 0.95665 0.97679 1.21809 1.01269 1.00527 0.95991 1.21811 1.01288 1.00523 0.96000 1.21131 0.81143 0.94775 1.02122 1.45931 1.05587 1.09648 1.77581 1.18841 0.87862 0.83262 0.74632 1.90690 1.75127 1.26736 1.49995 1.19469 0.90183 0.95153 1.08263 1.20327 0.94452 0.94244 1.14773 1.20431 0.93381 0.96878 1.00894 1.21094 0.97787 0.92565 1.11758 1.17613 0.91787 0.92288 0.88769 1.19618 1.00439 0.92811 1.35942 0.90042 1.25972 0.94610 1.01381 0.92665 1.69798 1.19724 1.29564 1.21609 0.86243 0.80208 0.80893 0.79313 1.18335 1.19565 1.19921 1.21638 0.93233 0.97121 0.99252 0.94144 0.94165 0.89730 0.92951 0.92966 0.92343 0.91606 0.92607 0.92575 0.91601 0.92336 0.91709 0.91745 0.76382 0.89348 0.88909 0.88628 0.90500 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.92 9.35 -35.23 -0.33 -4.24 16 3 C 0.07 0.73 4.80 37.16 0.18 0.91 16 4 C -0.07 -0.82 0.61 -154.51 -0.09 -0.91 16 5 C -0.14 -1.48 8.15 37.16 0.30 -1.18 16 6 C -0.14 -1.51 8.16 37.16 0.30 -1.21 16 7 C 0.13 1.86 4.56 -4.04 -0.02 1.84 16 8 N -0.73 -12.17 4.91 -61.24 -0.30 -12.47 16 9 C 0.56 12.41 7.77 -12.31 -0.10 12.31 16 10 O -0.55 -13.83 16.33 5.33 0.09 -13.74 16 11 C -0.13 -3.03 5.87 -105.04 -0.62 -3.64 16 12 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 13 C -0.10 -2.09 10.01 -39.73 -0.40 -2.48 16 14 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 15 C 0.10 2.60 5.57 -106.87 -0.60 2.01 16 16 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 17 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.78 -20.82 10.95 55.55 0.61 -20.21 16 20 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.64 6.86 -51.93 -0.36 0.28 16 31 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.06 0.65 6.86 -51.92 -0.36 0.29 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 5.87 4.18 -40.82 -0.17 5.70 16 39 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 43 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -30.00 351.72 -7.60 -37.60 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.52 Total: 8.86 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.42 Total: -14.88 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.31 Total: -32.68 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.24 Total: -17.99 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.00 -7.60 -37.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293881566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.652 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds