Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00188 * 2 1 4 4 C 1.53000 * 109.47286 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46999 * 60.00013 * 4 3 2 6 6 C 1.52997 * 109.46972 * 299.99851 * 4 3 2 7 7 C 1.52998 * 109.47045 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.46991 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00102 * 180.02562 * 8 7 4 10 10 O 1.21542 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99863 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02945 * 359.97438 * 11 9 8 13 13 C 1.38323 * 120.36046 * 180.02562 * 12 11 9 14 14 C 1.37749 * 120.41447 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.03994 * 359.97438 * 14 13 12 16 16 C 1.41435 * 120.17888 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99792 * 24.39006 * 16 15 14 18 18 C 1.39937 * 120.00029 * 204.38102 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.86125 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.85585 * 18 16 15 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46871 * 120.00054 * 20 18 16 23 23 H 1.48498 * 109.47266 * 240.00165 * 20 18 16 24 24 C 1.38999 * 120.02296 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47367 * 300.00439 * 1 2 3 26 26 H 1.09002 * 109.46497 * 60.00112 * 1 2 3 27 27 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47502 * 59.99337 * 3 2 1 29 29 H 1.09003 * 109.46967 * 299.99475 * 3 2 1 30 30 H 1.08996 * 109.47373 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47087 * 299.99798 * 5 4 3 32 32 H 1.08999 * 109.47511 * 59.99563 * 5 4 3 33 33 H 1.08995 * 109.47276 * 299.99440 * 6 4 3 34 34 H 1.09002 * 109.47246 * 60.00120 * 6 4 3 35 35 H 1.09009 * 109.46726 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47369 * 60.00459 * 7 4 3 37 37 H 1.08995 * 109.47621 * 300.00216 * 7 4 3 38 38 H 0.97004 * 120.00290 * 359.97438 * 8 7 4 39 39 H 1.08001 * 119.81453 * 359.97438 * 12 11 9 40 40 H 1.08002 * 119.79194 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.98284 * 179.97438 * 14 13 12 42 42 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.20633 * 359.70283 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4256 1.2502 7 6 4.1577 2.5823 0.0000 8 7 5.6182 2.4666 0.0000 9 6 6.3822 3.5769 0.0000 10 8 5.8595 4.6742 -0.0005 11 6 7.8564 3.4601 0.0006 12 6 8.4587 2.1971 0.0017 13 6 9.8370 2.0799 0.0027 14 6 10.6325 3.2044 0.0022 15 6 10.0448 4.4833 0.0000 16 6 10.8588 5.6399 -0.0010 17 1 11.8665 5.5906 -0.3866 18 6 10.3585 6.8481 0.4972 19 7 9.3025 6.8500 1.2695 20 14 11.1986 8.4582 0.0598 21 1 12.3624 8.1858 -0.8215 22 1 10.2377 9.3414 -0.6487 23 1 11.6633 9.1274 1.3014 24 6 8.6448 4.6048 0.0000 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 5.0739 0.3386 -1.2476 31 1 3.5441 -0.5707 -1.2482 32 1 3.6661 0.9657 -2.1385 33 1 3.6645 0.9667 2.1399 34 1 3.5430 -0.5702 1.2502 35 1 5.0730 0.3391 1.2504 36 1 3.8359 3.1237 0.8895 37 1 3.8365 3.1227 -0.8904 38 1 6.0354 1.5908 0.0008 39 1 7.8441 1.3091 0.0025 40 1 10.2922 1.1005 0.0031 41 1 11.7079 3.1047 0.0035 42 1 8.9555 7.6875 1.6145 43 1 8.1843 5.5817 -0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293881566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -98.260789 kcal Electronic energy + Delta-G solvation = -22954.125674 eV Core-core repulsion = 19576.708805 eV Total energy + Delta-G solvation = -3377.416868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10002 -39.65959 -38.75735 -37.31760 -35.62287 -34.24275 -31.93594 -31.26699 -28.33778 -28.18109 -27.94599 -27.09221 -26.02172 -23.81869 -22.77668 -21.25254 -20.24078 -19.45536 -18.05226 -17.42104 -17.13356 -16.84632 -16.61633 -16.31266 -16.23145 -15.97030 -15.36686 -14.98411 -14.91271 -14.53115 -14.30476 -14.24222 -14.05731 -13.70205 -13.44678 -12.96722 -12.80084 -12.75411 -12.70227 -12.53385 -12.43576 -12.18332 -11.90100 -11.86300 -11.84384 -11.55594 -11.49090 -11.07997 -10.80236 -10.58113 -10.14447 -9.46713 -9.38098 -8.66624 -6.37805 0.38433 1.00737 1.36548 1.46735 1.52885 2.10336 2.15298 2.19565 2.78787 2.92266 3.67960 3.69711 3.74264 3.90356 4.06933 4.29377 4.40185 4.42112 4.45922 4.57806 4.59471 4.62402 4.67333 4.76283 4.85537 4.88755 4.91176 5.01103 5.02022 5.09030 5.12550 5.19938 5.31682 5.38616 5.39426 5.45301 5.52720 5.86815 5.93100 6.05917 6.22856 6.29010 6.50868 6.68105 6.88220 6.94963 7.30595 8.30276 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003191 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.882043 B = 8773.732807 C = 9480.612498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.075 3.925 4 C -0.065 4.065 5 C -0.137 4.137 6 C -0.137 4.137 7 C 0.131 3.869 8 N -0.707 5.707 9 C 0.560 3.440 10 O -0.589 6.589 11 C -0.138 4.138 12 C -0.197 4.197 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.066 3.934 16 C -0.496 4.496 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.251 1.251 22 H -0.271 1.271 23 H -0.264 1.264 24 C -0.131 4.131 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 -12.949 -2.031 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.002 4.002 4 C -0.066 4.066 5 C -0.194 4.194 6 C -0.195 4.195 7 C 0.007 3.993 8 N -0.361 5.361 9 C 0.350 3.650 10 O -0.471 6.471 11 C -0.142 4.142 12 C -0.217 4.217 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.064 3.936 16 C -0.525 4.525 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.450 5.450 20 Si 0.803 3.197 21 H -0.174 1.174 22 H -0.196 1.196 23 H -0.188 1.188 24 C -0.152 4.152 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.251 0.749 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.673 -12.226 -1.883 18.439 hybrid contribution 0.237 1.046 0.070 1.075 sum -13.436 -11.180 -1.813 17.573 Atomic orbital electron populations 1.22909 0.79734 1.03775 1.00644 1.87813 1.20982 1.27576 1.95535 1.22389 0.91794 0.84947 1.01056 1.20683 0.94136 0.93508 0.98223 1.21798 1.01220 1.00789 0.95589 1.21803 1.01197 1.00819 0.95644 1.21291 0.79303 0.96967 1.01713 1.45710 1.06586 1.08628 1.75192 1.18726 0.87679 0.83865 0.74745 1.90668 1.75616 1.28631 1.52204 1.19772 0.91262 0.95526 1.07596 1.20825 0.95131 0.94491 1.11270 1.20921 0.93364 0.98084 0.98930 1.21407 0.98939 0.92436 1.10915 1.17962 0.91990 0.93827 0.89829 1.19885 1.00909 0.94064 1.37680 0.89792 1.26866 0.95100 1.04735 0.91932 1.69895 1.21581 1.30433 1.23124 0.85152 0.79098 0.76136 0.79304 1.17424 1.19570 1.18846 1.21445 0.93954 0.96896 1.02877 0.93499 0.93439 0.88382 0.92550 0.92401 0.92397 0.90878 0.92652 0.92829 0.90833 0.92456 0.92335 0.92053 0.74930 0.84808 0.84324 0.87334 0.90317 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.17 9.35 -148.98 -1.39 -8.56 16 3 C 0.08 1.34 4.80 71.98 0.35 1.69 16 4 C -0.07 -1.30 0.61 -52.18 -0.03 -1.33 16 5 C -0.14 -2.57 8.15 71.98 0.59 -1.98 16 6 C -0.14 -2.65 8.16 71.98 0.59 -2.06 16 7 C 0.13 3.52 4.56 86.38 0.39 3.91 16 8 N -0.71 -22.45 4.91 -465.95 -2.29 -24.73 16 9 C 0.56 24.79 7.77 86.80 0.67 25.46 16 10 O -0.59 -30.90 16.33 -3.85 -0.06 -30.96 16 11 C -0.14 -6.58 5.87 -20.13 -0.12 -6.70 16 12 C -0.20 -7.76 9.55 22.70 0.22 -7.54 16 13 C -0.10 -3.76 10.01 22.17 0.22 -3.54 16 14 C -0.22 -10.17 9.78 22.77 0.22 -9.95 16 15 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 16 C -0.50 -27.19 9.05 23.47 0.21 -26.98 16 17 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 18 C 0.03 1.50 5.14 85.25 0.44 1.94 16 19 N -0.82 -46.36 10.95 21.82 0.24 -46.12 16 20 Si 0.98 39.90 29.60 68.60 2.03 41.93 16 21 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 24 C -0.13 -7.35 8.23 23.01 0.19 -7.16 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.08 6.86 -2.39 -0.02 1.06 16 31 H 0.07 1.30 7.68 -2.39 -0.02 1.28 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.33 7.68 -2.39 -0.02 1.31 16 35 H 0.06 1.10 6.86 -2.38 -0.02 1.08 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.41 10.86 4.18 -92.71 -0.39 10.47 16 39 H 0.13 3.99 6.38 -2.91 -0.02 3.97 16 40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 43 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 Total: -1.00 -68.71 351.72 4.21 -64.50 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.61 Total: 33.13 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 5.07 Total: -29.18 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -2.05 Total: -70.86 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.46 Total: -39.52 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -68.71 4.21 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293881566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.763 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds