Wall clock time and date at job start Tue Mar 31 2020 07:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46881 * 2 1 4 4 H 1.09000 * 109.46701 * 305.61312 * 3 2 1 5 5 N 1.46897 * 109.47089 * 65.61129 * 3 2 1 6 6 C 1.46899 * 111.00071 * 205.85567 * 5 3 2 7 7 C 1.53001 * 109.47222 * 185.18928 * 6 5 3 8 8 C 1.50703 * 109.46967 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99992 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99811 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99799 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99742 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47265 * 60.00235 * 12 10 8 14 14 H 1.48507 * 109.46958 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47116 * 299.99678 * 12 10 8 16 16 C 1.50701 * 109.47003 * 185.61738 * 3 2 1 17 17 C 1.38366 * 119.84378 * 279.72380 * 16 3 2 18 18 C 1.37950 * 120.14678 * 179.72467 * 17 16 3 19 19 C 1.39629 * 119.84538 * 0.55132 * 18 17 16 20 20 C 1.47725 * 120.14821 * 179.70563 * 19 18 17 21 21 O 1.21471 * 119.99840 * 180.02562 * 20 19 18 22 22 O 1.34717 * 120.00172 * 0.02562 * 20 19 18 23 23 C 1.45194 * 117.00109 * 180.02562 * 22 20 19 24 24 C 1.39624 * 119.70090 * 359.72391 * 19 18 17 25 25 C 1.37944 * 119.84909 * 359.97438 * 24 19 18 26 26 H 1.08995 * 109.47477 * 53.77142 * 1 2 3 27 27 H 1.09007 * 109.46967 * 173.76601 * 1 2 3 28 28 H 1.08999 * 109.47476 * 293.76303 * 1 2 3 29 29 H 1.09000 * 109.47766 * 240.00228 * 2 1 3 30 30 H 1.09004 * 109.47376 * 119.99146 * 2 1 3 31 31 H 1.00894 * 111.00273 * 329.82006 * 5 3 2 32 32 H 1.08999 * 109.47220 * 305.19643 * 6 5 3 33 33 H 1.09004 * 109.46605 * 65.18962 * 6 5 3 34 34 H 1.08996 * 109.47128 * 300.00389 * 7 6 5 35 35 H 1.09000 * 109.46834 * 60.00532 * 7 6 5 36 36 H 0.97011 * 119.99571 * 179.97438 * 11 10 8 37 37 H 1.08001 * 119.93078 * 0.02562 * 17 16 3 38 38 H 1.07996 * 120.07498 * 180.26968 * 18 17 16 39 39 H 1.08997 * 109.47457 * 180.02562 * 23 22 20 40 40 H 1.09003 * 109.46952 * 300.00514 * 23 22 20 41 41 H 1.09000 * 109.47336 * 60.00278 * 23 22 20 42 42 H 1.07998 * 120.07385 * 179.97438 * 24 19 18 43 43 H 1.08002 * 119.92396 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5968 1.9846 -0.8355 5 7 1.6639 2.0949 1.2614 6 6 1.5636 3.5506 1.0918 7 6 1.2986 4.2051 2.4491 8 6 1.1951 5.6985 2.2750 9 1 1.3074 6.1369 1.2944 10 6 0.9579 6.5051 3.3678 11 7 0.8216 5.9712 4.5619 12 14 0.8302 8.3562 3.1520 13 1 -0.2863 8.6706 2.2250 14 1 0.5729 8.9915 4.4695 15 1 2.1020 8.8779 2.5903 16 6 3.5405 1.4449 -0.1391 17 6 4.3350 1.2048 0.9680 18 6 5.7091 1.1998 0.8467 19 6 6.2980 1.4492 -0.3945 20 6 7.7690 1.4520 -0.5307 21 8 8.2784 1.6697 -1.6117 22 8 8.5454 1.2129 0.5439 23 6 9.9823 1.2318 0.3363 24 6 5.4903 1.6965 -1.5063 25 6 4.1174 1.6923 -1.3721 26 1 -0.3634 0.6073 -0.8289 27 1 -0.3633 -1.0217 -0.1116 28 1 -0.3634 0.4141 0.9405 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 0.8032 1.7127 1.6235 32 1 2.4971 3.9336 0.6797 33 1 0.7442 3.7814 0.4110 34 1 0.3651 3.8221 2.8612 35 1 2.1180 3.9743 3.1299 36 1 0.6551 6.5388 5.3308 37 1 3.8783 1.0160 1.9283 38 1 6.3280 1.0079 1.7107 39 1 10.4884 1.0246 1.2792 40 1 10.2536 0.4714 -0.3961 41 1 10.2836 2.2131 -0.0302 42 1 5.9394 1.8905 -2.4691 43 1 3.4915 1.8829 -2.2313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293964309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:38 Heat of formation + Delta-G solvation = -94.622304 kcal Electronic energy + Delta-G solvation = -22610.320967 eV Core-core repulsion = 19233.061875 eV Total energy + Delta-G solvation = -3377.259092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64253 -40.32789 -38.07701 -37.44963 -35.56893 -33.73167 -32.48348 -31.94130 -30.50720 -28.82997 -27.16276 -25.68042 -24.14311 -23.63040 -22.42206 -22.11464 -21.05004 -19.07076 -18.48630 -18.22373 -17.41069 -17.06945 -16.63012 -16.42916 -16.13245 -15.60164 -15.35001 -14.96090 -14.64744 -14.50040 -14.42824 -14.31130 -13.92911 -13.72200 -13.51304 -13.26266 -13.11977 -12.99846 -12.80437 -12.56960 -12.23350 -12.11019 -11.98356 -11.92276 -11.84856 -11.65301 -11.57858 -11.35252 -11.20457 -10.54187 -9.93958 -9.79314 -9.29961 -8.18867 -6.29608 -0.34255 0.44144 1.40443 1.43103 1.45598 1.50933 1.67842 2.41098 2.78036 3.14730 3.29989 3.63091 3.84623 3.94039 4.01361 4.09386 4.23819 4.28263 4.31696 4.42017 4.47832 4.51191 4.57395 4.62345 4.67917 4.76948 4.84637 4.93480 5.09342 5.11339 5.13182 5.16968 5.22997 5.31493 5.38734 5.44716 5.46218 5.61308 5.72667 5.83415 5.90439 6.17789 6.30931 6.59708 6.62079 6.87794 7.39353 8.92778 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003840 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.544217 B = 7289.436623 C = 8960.571074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.118 3.882 4 H 0.057 0.943 5 N -0.686 5.686 6 C 0.089 3.911 7 C 0.036 3.964 8 C -0.545 4.545 9 H 0.057 0.943 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.270 1.270 16 C -0.036 4.036 17 C -0.108 4.108 18 C -0.065 4.065 19 C -0.153 4.153 20 C 0.513 3.487 21 O -0.538 6.538 22 O -0.359 6.359 23 C 0.029 3.971 24 C -0.060 4.060 25 C -0.131 4.131 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.346 0.654 32 H 0.049 0.951 33 H 0.020 0.980 34 H -0.007 1.007 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.356 -14.572 -10.671 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C 0.008 3.992 4 H 0.075 0.925 5 N -0.319 5.319 6 C -0.040 4.040 7 C -0.001 4.001 8 C -0.584 4.584 9 H 0.075 0.925 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.786 3.214 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.037 4.037 17 C -0.126 4.126 18 C -0.083 4.083 19 C -0.154 4.154 20 C 0.360 3.640 21 O -0.429 6.429 22 O -0.275 6.275 23 C -0.064 4.064 24 C -0.079 4.079 25 C -0.149 4.149 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.158 0.842 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.147 -14.457 -10.547 20.572 hybrid contribution -0.610 1.263 -0.244 1.424 sum 9.537 -13.194 -10.791 19.532 Atomic orbital electron populations 1.21830 0.94921 1.02811 1.01709 1.21644 0.96313 0.93501 1.03579 1.20628 0.90580 0.96288 0.91670 0.92546 1.60420 1.39923 1.04006 1.27536 1.21742 0.98335 0.86650 0.97296 1.18863 0.94834 0.93750 0.92701 1.21595 1.49108 0.93569 0.94125 0.92484 1.25905 0.94811 1.03847 0.94884 1.70092 1.49993 1.37246 0.99604 0.85558 0.79020 0.79341 0.77470 1.19112 1.20743 1.19477 1.20386 0.96078 0.93988 0.93236 1.21142 0.92588 0.99259 0.99619 1.21597 0.95358 0.94877 0.96436 1.19181 0.88626 1.11095 0.96481 1.21413 0.88702 0.72103 0.81762 1.90787 1.76133 1.47185 1.28840 1.86554 1.21878 1.81630 1.37436 1.23600 0.74645 1.02788 1.05399 1.21281 0.93358 0.95263 0.97951 1.21185 0.94221 1.01465 0.98002 0.92677 0.90750 0.93158 0.89819 0.90882 0.83333 0.93239 0.96197 0.98878 0.98747 0.92777 0.84630 0.83605 0.84822 0.91490 0.92015 0.84184 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.63 71.98 0.69 -2.10 16 2 C -0.11 -2.17 5.49 30.60 0.17 -2.01 16 3 C 0.12 2.96 2.23 44.17 0.10 3.06 16 4 H 0.06 1.41 7.70 -2.39 -0.02 1.39 16 5 N -0.69 -22.07 5.50 -495.43 -2.73 -24.80 16 6 C 0.09 3.61 5.39 86.30 0.47 4.07 16 7 C 0.04 1.89 5.28 29.85 0.16 2.05 16 8 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 9 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 10 C 0.00 0.21 5.46 84.66 0.46 0.68 16 11 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 12 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 C -0.04 -0.93 4.71 -19.80 -0.09 -1.02 16 17 C -0.11 -2.92 9.30 22.23 0.21 -2.72 16 18 C -0.06 -1.66 9.62 22.54 0.22 -1.44 16 19 C -0.15 -4.06 5.87 -20.10 -0.12 -4.18 16 20 C 0.51 14.01 7.90 70.33 0.56 14.57 16 21 O -0.54 -16.68 16.14 19.93 0.32 -16.36 16 22 O -0.36 -8.36 9.82 -56.27 -0.55 -8.92 16 23 C 0.03 0.45 10.56 113.37 1.20 1.65 16 24 C -0.06 -1.50 9.60 22.53 0.22 -1.28 16 25 C -0.13 -3.05 9.65 22.23 0.21 -2.84 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 1.01 6.67 -2.39 -0.02 0.99 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.35 10.63 6.65 -89.70 -0.60 10.04 16 32 H 0.05 2.09 7.95 -2.39 -0.02 2.07 16 33 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 37 H 0.14 3.80 7.70 -2.91 -0.02 3.78 16 38 H 0.15 3.30 7.61 -2.91 -0.02 3.28 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.14 3.22 7.65 -2.91 -0.02 3.19 16 43 H 0.15 2.77 8.03 -2.91 -0.02 2.75 16 Total: -1.00 -68.22 362.82 4.42 -63.80 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.39 Total: 18.51 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.67 Total: -22.38 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.44 Total: -81.02 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.23 Total: -25.27 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.22 4.42 -63.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293964309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.825 kcal (2) G-P(sol) polarization free energy of solvation -68.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds