Wall clock time and date at job start Tue Mar 31 2020 07:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47553 * 2 1 4 4 H 1.08995 * 109.47328 * 54.99430 * 3 2 1 5 5 N 1.46497 * 109.46627 * 294.99725 * 3 2 1 6 6 C 1.34775 * 120.00364 * 85.00274 * 5 3 2 7 7 O 1.21548 * 119.99521 * 359.97438 * 6 5 3 8 8 C 1.47880 * 120.00521 * 179.97438 * 6 5 3 9 9 C 1.39926 * 120.02136 * 359.71910 * 8 6 5 10 10 C 1.38331 * 120.35520 * 179.71598 * 9 8 6 11 11 C 1.37750 * 120.41298 * 0.56508 * 10 9 8 12 12 C 1.40757 * 120.03980 * 359.71670 * 11 10 9 13 13 C 1.41437 * 120.17701 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99595 * 150.18025 * 13 12 11 15 15 C 1.39939 * 120.00097 * 330.18500 * 13 12 11 16 16 N 1.30834 * 119.99571 * 161.72775 * 15 13 12 17 17 Si 1.86797 * 120.00051 * 341.72531 * 15 13 12 18 18 H 1.48487 * 109.47140 * 95.41592 * 17 15 13 19 19 H 1.48503 * 109.47064 * 215.41714 * 17 15 13 20 20 H 1.48503 * 109.46946 * 335.41315 * 17 15 13 21 21 C 1.38995 * 120.02786 * 179.97438 * 8 6 5 22 22 C 1.53000 * 109.47022 * 174.99615 * 3 2 1 23 23 C 1.53001 * 109.46907 * 179.97438 * 22 3 2 24 24 C 1.52991 * 109.47234 * 299.99659 * 22 3 2 25 25 O 1.42900 * 109.47067 * 60.00151 * 22 3 2 26 26 H 1.08993 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46335 * 60.00280 * 1 2 3 28 28 H 1.09000 * 109.47150 * 300.00393 * 1 2 3 29 29 H 1.09005 * 109.46841 * 119.99829 * 2 1 3 30 30 H 1.08993 * 109.47404 * 239.99313 * 2 1 3 31 31 H 0.97003 * 120.00157 * 264.99322 * 5 3 2 32 32 H 1.08000 * 119.82206 * 359.97438 * 9 8 6 33 33 H 1.07997 * 119.79408 * 180.26182 * 10 9 8 34 34 H 1.07998 * 119.98230 * 179.73409 * 11 10 9 35 35 H 0.96999 * 119.99629 * 179.97438 * 16 15 13 36 36 H 1.07992 * 120.20086 * 359.97377 * 21 8 6 37 37 H 1.09007 * 109.46732 * 60.00093 * 23 22 3 38 38 H 1.08996 * 109.47313 * 180.02562 * 23 22 3 39 39 H 1.09004 * 109.47199 * 300.00585 * 23 22 3 40 40 H 1.09003 * 109.47180 * 60.00779 * 24 22 3 41 41 H 1.09006 * 109.46811 * 180.02562 * 24 22 3 42 42 H 1.09001 * 109.47479 * 300.00056 * 24 22 3 43 43 H 0.96697 * 114.00468 * 59.99749 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 7 1.6526 2.0973 -1.2519 6 6 0.4354 2.6643 -1.3671 7 8 -0.3410 2.6319 -0.4325 8 6 0.0444 3.3259 -2.6306 9 6 0.9400 3.3686 -3.7048 10 6 0.5793 3.9805 -4.8918 11 6 -0.6608 4.5649 -5.0264 12 6 -1.5729 4.5370 -3.9547 13 6 -2.8472 5.1355 -4.0899 14 1 -3.6892 4.7433 -3.5389 15 6 -3.0171 6.2359 -4.9377 16 7 -4.2148 6.5683 -5.3459 17 14 -1.5338 7.2298 -5.4865 18 1 -1.0727 6.7410 -6.8106 19 1 -1.9093 8.6628 -5.5911 20 1 -0.4401 7.0760 -4.4937 21 6 -1.2110 3.9104 -2.7502 22 6 3.5649 1.4442 0.1258 23 6 4.0751 2.8866 0.1252 24 6 3.9696 0.7602 1.4332 25 8 4.1347 0.7374 -0.9778 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 2.2722 2.1230 -1.9978 32 1 1.9167 2.9178 -3.6080 33 1 1.2762 4.0046 -5.7165 34 1 -0.9336 5.0444 -5.9548 35 1 -4.3326 7.3312 -5.9333 36 1 -1.9041 3.8830 -1.9224 37 1 3.6404 3.4261 0.9668 38 1 5.1614 2.8879 0.2143 39 1 3.7867 3.3736 -0.8064 40 1 3.6062 -0.2675 1.4332 41 1 5.0559 0.7619 1.5230 42 1 3.5350 1.2993 2.2750 43 1 3.9192 1.1162 -1.8410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294150894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:18 Heat of formation + Delta-G solvation = -102.461093 kcal Electronic energy + Delta-G solvation = -23730.268345 eV Core-core repulsion = 20352.669338 eV Total energy + Delta-G solvation = -3377.599007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52078 -39.77366 -38.76383 -35.74744 -35.59231 -33.88737 -32.80944 -32.23081 -31.65542 -28.27129 -27.65414 -26.84369 -24.57723 -22.71678 -22.45686 -21.60516 -21.19679 -19.76700 -18.39245 -17.77946 -17.46761 -16.68666 -16.50019 -16.39385 -15.77848 -15.58440 -15.32238 -15.25640 -14.62968 -14.49808 -14.39279 -13.92192 -13.76972 -13.51270 -13.34922 -13.13241 -13.06001 -12.83836 -12.78817 -12.69513 -12.59835 -12.41871 -12.27591 -11.79137 -11.66978 -11.64737 -11.56145 -11.17815 -10.99767 -10.75404 -10.02505 -9.62885 -9.55230 -8.92510 -6.56485 0.19681 0.74145 1.24693 1.40997 1.47708 1.97979 2.12092 2.13449 2.65732 3.23569 3.45385 3.54528 3.84181 3.90176 4.01950 4.19151 4.26171 4.29436 4.40291 4.48576 4.57413 4.69569 4.74089 4.82366 4.87426 4.88853 4.91842 4.98601 5.00562 5.06910 5.15345 5.21184 5.24216 5.30610 5.42023 5.46094 5.54263 5.64770 5.71639 5.84278 6.10446 6.29572 6.55474 6.65667 6.73421 6.74401 7.27915 8.16744 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026906 B = 0.003943 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.409953 B = 7100.287123 C = 7600.855618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.120 3.880 4 H 0.077 0.923 5 N -0.705 5.705 6 C 0.566 3.434 7 O -0.571 6.571 8 C -0.113 4.113 9 C -0.183 4.183 10 C -0.082 4.082 11 C -0.226 4.226 12 C 0.066 3.934 13 C -0.490 4.490 14 H 0.048 0.952 15 C 0.045 3.955 16 N -0.850 5.850 17 Si 0.969 3.031 18 H -0.247 1.247 19 H -0.278 1.278 20 H -0.251 1.251 21 C -0.167 4.167 22 C 0.131 3.869 23 C -0.179 4.179 24 C -0.142 4.142 25 O -0.560 6.560 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.408 0.592 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.295 0.705 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.982 -8.453 6.316 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.015 3.985 4 H 0.095 0.905 5 N -0.359 5.359 6 C 0.355 3.645 7 O -0.451 6.451 8 C -0.116 4.116 9 C -0.202 4.202 10 C -0.100 4.100 11 C -0.246 4.246 12 C 0.064 3.936 13 C -0.520 4.520 14 H 0.066 0.934 15 C -0.169 4.169 16 N -0.477 5.477 17 Si 0.791 3.209 18 H -0.171 1.171 19 H -0.205 1.205 20 H -0.175 1.175 21 C -0.188 4.188 22 C 0.090 3.910 23 C -0.237 4.237 24 C -0.199 4.199 25 O -0.367 6.367 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 19.454 -8.720 7.356 22.552 hybrid contribution -0.883 1.065 -0.950 1.678 sum 18.571 -7.655 6.406 21.084 Atomic orbital electron populations 1.21773 0.96861 1.00414 1.01108 1.21890 0.94782 0.95718 1.03695 1.21815 0.95909 0.93726 0.87028 0.90461 1.45694 1.15739 1.57331 1.17102 1.18427 0.81763 0.77282 0.87021 1.90710 1.52468 1.60552 1.41401 1.19750 0.95692 1.01648 0.94516 1.21007 0.99754 1.06593 0.92874 1.21047 0.95155 0.95842 0.97963 1.21386 0.97224 1.08018 0.97965 1.17768 0.92614 0.91922 0.91323 1.19471 0.94708 1.14083 1.23719 0.93371 1.26916 1.00045 0.97703 0.92280 1.69732 1.25902 1.25465 1.26551 0.85446 0.78547 0.76444 0.80482 1.17126 1.20457 1.17461 1.21191 0.96351 1.04661 0.96578 1.21426 0.88259 0.92307 0.89018 1.22489 1.02596 0.95469 1.03113 1.21846 1.02964 1.01456 0.93644 1.86574 1.75910 1.57181 1.17067 0.92573 0.95091 0.93918 0.89134 0.90869 0.75363 0.83231 0.83510 0.87733 0.89452 0.89415 0.91727 0.90461 0.92062 0.91057 0.90702 0.90145 0.76818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.51 71.98 0.61 -3.42 16 2 C -0.12 -2.61 5.18 30.59 0.16 -2.45 16 3 C 0.12 2.56 1.62 44.99 0.07 2.64 16 4 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 5 N -0.70 -17.01 4.25 -445.39 -1.89 -18.90 16 6 C 0.57 20.12 6.34 86.80 0.55 20.67 16 7 O -0.57 -24.35 13.47 -3.87 -0.05 -24.40 16 8 C -0.11 -4.48 5.87 -20.13 -0.12 -4.60 16 9 C -0.18 -5.88 9.55 22.70 0.22 -5.67 16 10 C -0.08 -2.86 10.01 22.18 0.22 -2.64 16 11 C -0.23 -10.00 7.17 22.77 0.16 -9.84 16 12 C 0.07 3.39 5.10 -21.32 -0.11 3.29 16 13 C -0.49 -28.24 9.57 23.47 0.22 -28.02 16 14 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 15 C 0.04 2.41 5.40 85.25 0.46 2.87 16 16 N -0.85 -47.11 13.93 21.83 0.30 -46.81 16 17 Si 0.97 41.53 24.52 68.60 1.68 43.21 16 18 H -0.25 -9.58 6.71 99.48 0.67 -8.92 16 19 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.25 -10.89 6.86 99.48 0.68 -10.21 16 21 C -0.17 -8.22 9.34 23.01 0.21 -8.00 16 22 C 0.13 2.07 0.85 -10.80 -0.01 2.07 16 23 C -0.18 -2.70 8.66 71.98 0.62 -2.08 16 24 C -0.14 -1.90 8.50 71.98 0.61 -1.29 16 25 O -0.56 -8.64 12.40 -148.98 -1.85 -10.49 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.03 1.05 5.64 -2.39 -0.01 1.03 16 28 H 0.04 1.30 7.84 -2.39 -0.02 1.28 16 29 H 0.09 1.58 6.17 -2.38 -0.01 1.57 16 30 H 0.07 1.50 7.83 -2.39 -0.02 1.48 16 31 H 0.41 7.27 4.95 -92.71 -0.46 6.81 16 32 H 0.15 3.18 6.38 -2.91 -0.02 3.16 16 33 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.10 4.56 4.72 -2.91 -0.01 4.55 16 35 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 36 H 0.09 4.65 7.64 -2.91 -0.02 4.63 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.95 7.44 -2.38 -0.02 0.93 16 40 H 0.07 0.95 6.32 -2.39 -0.02 0.93 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.38 3.94 7.51 -74.06 -0.56 3.38 16 Total: -1.00 -68.09 336.06 2.05 -66.05 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.04 Total: 27.82 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.90 Total: -36.48 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.59 Total: -65.70 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.90 Total: -34.89 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.68 Total: 43.21 kcal Total: -68.09 2.05 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294150894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.413 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds