Wall clock time and date at job start Tue Mar 31 2020 07:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 H 1.09003 * 109.46692 * 55.00101 * 3 2 1 5 5 N 1.46496 * 109.47540 * 295.00161 * 3 2 1 6 6 C 1.34780 * 120.00093 * 84.99800 * 5 3 2 7 7 O 1.21586 * 119.99531 * 0.02562 * 6 5 3 8 8 C 1.47638 * 120.00121 * 180.02562 * 6 5 3 9 9 C 1.40015 * 119.89348 * 359.72574 * 8 6 5 10 10 C 1.36320 * 120.10238 * 179.72008 * 9 8 6 11 11 C 1.40889 * 119.89494 * 0.57753 * 10 9 8 12 12 C 1.41108 * 120.10323 * 179.67629 * 11 10 9 13 13 H 1.08000 * 119.99548 * 204.64647 * 12 11 10 14 14 C 1.40222 * 120.00021 * 24.65167 * 12 11 10 15 15 N 1.30645 * 120.00338 * 17.86430 * 14 12 11 16 16 Si 1.86805 * 119.99808 * 197.86481 * 14 12 11 17 17 H 1.48499 * 109.47124 * 59.99701 * 16 14 12 18 18 H 1.48495 * 109.47052 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46878 * 300.00125 * 16 14 12 20 20 C 1.40890 * 119.78822 * 359.69686 * 11 10 9 21 21 C 1.36307 * 119.89394 * 359.97438 * 20 11 10 22 22 C 1.53002 * 109.47189 * 174.99631 * 3 2 1 23 23 C 1.52995 * 109.47189 * 179.97438 * 22 3 2 24 24 C 1.52997 * 109.47205 * 300.00536 * 22 3 2 25 25 O 1.42904 * 109.46534 * 60.00509 * 22 3 2 26 26 H 1.08994 * 109.47297 * 60.00254 * 1 2 3 27 27 H 1.08997 * 109.47088 * 299.99419 * 1 2 3 28 28 H 1.09007 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46956 * 120.00541 * 2 1 3 30 30 H 1.09003 * 109.46771 * 239.99743 * 2 1 3 31 31 H 0.96997 * 120.00094 * 265.00078 * 5 3 2 32 32 H 1.07993 * 119.94858 * 359.97438 * 9 8 6 33 33 H 1.08000 * 120.05367 * 180.24663 * 10 9 8 34 34 H 0.97000 * 120.00100 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.05017 * 179.97438 * 20 11 10 36 36 H 1.08007 * 119.94339 * 180.02562 * 21 20 11 37 37 H 1.08999 * 109.47413 * 60.00418 * 23 22 3 38 38 H 1.09001 * 109.47388 * 180.02562 * 23 22 3 39 39 H 1.08998 * 109.47292 * 300.00480 * 23 22 3 40 40 H 1.09000 * 109.47197 * 59.99961 * 24 22 3 41 41 H 1.09004 * 109.46620 * 179.97438 * 24 22 3 42 42 H 1.09002 * 109.47341 * 299.99331 * 24 22 3 43 43 H 0.96700 * 113.99805 * 180.02562 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9814 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3669 7 8 -0.3412 2.6326 -0.4316 8 6 0.0443 3.3241 -2.6285 9 6 0.9422 3.3645 -3.7021 10 6 0.5838 3.9675 -4.8709 11 6 -0.6880 4.5613 -4.9935 12 6 -1.0611 5.1926 -6.1991 13 1 -1.8158 5.9652 -6.1929 14 6 -0.4521 4.8169 -7.4050 15 7 0.1845 3.6791 -7.4886 16 14 -0.5510 5.9433 -8.8919 17 1 0.0749 7.2498 -8.5657 18 1 0.1683 5.3214 -10.0326 19 1 -1.9743 6.1543 -9.2592 20 6 -1.5859 4.5231 -3.9084 21 6 -1.2210 3.9120 -2.7459 22 6 3.5648 1.4443 0.1258 23 6 4.0749 2.8867 0.1252 24 6 3.9695 0.7602 1.4331 25 8 4.1346 0.7377 -0.9779 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.2719 2.1232 -1.9977 32 1 1.9188 2.9137 -3.6054 33 1 1.2755 3.9947 -5.6999 34 1 0.6061 3.4193 -8.3227 35 1 -2.5617 4.9773 -3.9976 36 1 -1.9088 3.8818 -1.9138 37 1 3.6403 3.4262 0.9667 38 1 5.1612 2.8881 0.2143 39 1 3.7865 3.3737 -0.8064 40 1 3.6062 -0.2675 1.4330 41 1 5.0559 0.7612 1.5224 42 1 3.5350 1.2992 2.2750 43 1 5.1007 0.6984 -0.9633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294240843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:25 Heat of formation + Delta-G solvation = -88.812338 kcal Electronic energy + Delta-G solvation = -23601.234560 eV Core-core repulsion = 20224.227407 eV Total energy + Delta-G solvation = -3377.007153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82675 -38.20542 -36.98196 -34.61879 -33.83264 -32.18120 -31.69063 -29.97219 -29.39918 -27.45281 -26.56630 -25.27043 -22.10332 -21.47598 -20.94941 -20.12906 -19.45641 -17.49282 -16.91716 -16.57665 -15.82188 -15.46504 -14.99457 -14.60655 -14.15035 -13.96887 -13.78888 -13.54308 -13.17865 -12.92593 -12.62798 -12.50006 -12.31024 -12.10854 -12.01781 -11.85088 -11.75768 -11.62956 -11.31933 -11.23767 -11.08940 -10.93977 -10.66146 -10.48348 -10.40573 -10.09342 -10.01853 -9.52007 -9.31052 -8.85760 -8.39426 -7.67980 -7.50287 -7.00219 -4.57077 2.28726 2.94315 2.95885 3.00065 3.07331 3.75929 3.81854 3.92067 4.14588 4.56510 4.60857 4.77578 4.90472 5.31152 5.39586 5.43528 5.55302 5.58407 5.62088 5.63308 5.80727 5.92861 5.95356 6.09675 6.11514 6.20602 6.25410 6.26948 6.35579 6.55646 6.79642 6.81822 6.86016 7.03623 7.15038 7.17699 7.47164 7.56186 7.70621 7.84389 7.89493 8.10764 8.36699 8.43420 8.66429 8.79070 9.17730 9.91794 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.003711 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.744173 B = 7543.117737 C = 8109.925203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.092 0.908 5 N -0.729 5.729 6 C 0.572 3.428 7 O -0.573 6.573 8 C -0.283 4.283 9 C -0.062 4.062 10 C -0.179 4.179 11 C 0.129 3.871 12 C -0.445 4.445 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.772 5.772 16 Si 0.913 3.087 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.240 4.240 21 C -0.023 4.023 22 C 0.118 3.882 23 C -0.178 4.178 24 C -0.178 4.178 25 O -0.554 6.554 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.287 0.713 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -4.166 9.160 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.060 3.940 4 H 0.110 0.890 5 N -0.382 5.382 6 C 0.366 3.634 7 O -0.455 6.455 8 C -0.288 4.288 9 C -0.081 4.081 10 C -0.198 4.198 11 C 0.126 3.874 12 C -0.473 4.473 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.395 5.395 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.259 4.259 21 C -0.042 4.042 22 C 0.077 3.923 23 C -0.236 4.236 24 C -0.235 4.235 25 O -0.360 6.360 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.357 -4.420 9.489 13.395 hybrid contribution 0.966 0.428 -0.944 1.417 sum 9.323 -3.993 8.545 13.261 Atomic orbital electron populations 1.21814 0.94936 0.99955 1.03526 1.21941 0.96832 0.96147 1.01943 1.20843 0.90129 0.93890 0.89145 0.89048 1.45862 1.17634 1.58887 1.15776 1.18521 0.80247 0.76557 0.88035 1.90630 1.51714 1.61838 1.41320 1.18934 0.98702 1.16632 0.94494 1.20497 0.96460 0.97745 0.93439 1.20970 0.97297 1.04774 0.96745 1.17773 0.90285 0.87514 0.91861 1.19807 1.18699 1.17601 0.91185 0.89813 1.26083 0.92820 0.94596 1.01113 1.69740 1.23737 1.17725 1.28331 0.86275 0.79817 0.80982 0.79264 1.18510 1.20068 1.18688 1.20707 0.99515 1.10157 0.95539 1.20354 0.93946 0.93752 0.96141 1.21505 0.93475 0.90938 0.86349 1.22470 1.00796 0.96583 1.03708 1.22520 1.01579 1.01997 0.97450 1.86597 1.24852 1.77486 1.47046 0.91680 0.92564 0.94224 0.91916 0.91366 0.76297 0.89326 0.86277 0.90212 0.88491 0.88161 0.91563 0.92461 0.91134 0.91153 0.92204 0.91415 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.51 37.16 0.32 -2.04 16 2 C -0.13 -1.84 5.18 -26.73 -0.14 -1.98 16 3 C 0.17 2.38 1.62 -67.93 -0.11 2.27 16 4 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 5 N -0.73 -12.48 4.25 -54.82 -0.23 -12.71 16 6 C 0.57 12.02 6.33 -12.42 -0.08 11.94 16 7 O -0.57 -13.04 13.46 5.29 0.07 -12.97 16 8 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 9 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 10 C -0.18 -4.44 8.64 -39.27 -0.34 -4.78 16 11 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 12 C -0.45 -11.20 9.04 -37.75 -0.34 -11.54 16 13 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 14 C 0.08 1.77 5.14 -17.31 -0.09 1.68 16 15 N -0.77 -18.73 10.95 55.56 0.61 -18.13 16 16 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 18 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 21 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 22 C 0.12 1.30 0.78 -90.62 -0.07 1.22 16 23 C -0.18 -1.88 8.66 37.15 0.32 -1.56 16 24 C -0.18 -1.53 8.47 37.16 0.31 -1.22 16 25 O -0.55 -6.07 11.91 -35.23 -0.42 -6.49 16 26 H 0.06 1.27 5.65 -51.93 -0.29 0.98 16 27 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.75 6.17 -51.93 -0.32 0.43 16 30 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 31 H 0.40 6.66 5.99 -40.82 -0.24 6.41 16 32 H 0.09 1.75 6.37 -52.49 -0.33 1.42 16 33 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 34 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 35 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.87 7.44 -51.93 -0.39 0.49 16 40 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.37 2.57 9.04 45.56 0.41 2.99 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -28.33 343.05 -7.91 -36.24 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.51 Total: 15.85 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.56 Total: -19.36 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.38 Total: -30.84 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.35 Total: -19.46 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.33 -7.91 -36.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294240843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.577 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds