Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 H 1.09003 * 109.46692 * 55.00101 * 3 2 1 5 5 N 1.46496 * 109.47540 * 295.00161 * 3 2 1 6 6 C 1.34780 * 120.00093 * 84.99800 * 5 3 2 7 7 O 1.21586 * 119.99531 * 0.02562 * 6 5 3 8 8 C 1.47638 * 120.00121 * 180.02562 * 6 5 3 9 9 C 1.40015 * 119.89348 * 359.72574 * 8 6 5 10 10 C 1.36320 * 120.10238 * 179.72008 * 9 8 6 11 11 C 1.40889 * 119.89494 * 0.57753 * 10 9 8 12 12 C 1.41108 * 120.10323 * 179.67629 * 11 10 9 13 13 H 1.08000 * 119.99548 * 204.64647 * 12 11 10 14 14 C 1.40222 * 120.00021 * 24.65167 * 12 11 10 15 15 N 1.30645 * 120.00338 * 17.86430 * 14 12 11 16 16 Si 1.86805 * 119.99808 * 197.86481 * 14 12 11 17 17 H 1.48499 * 109.47124 * 59.99701 * 16 14 12 18 18 H 1.48495 * 109.47052 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46878 * 300.00125 * 16 14 12 20 20 C 1.40890 * 119.78822 * 359.69686 * 11 10 9 21 21 C 1.36307 * 119.89394 * 359.97438 * 20 11 10 22 22 C 1.53002 * 109.47189 * 174.99631 * 3 2 1 23 23 C 1.52995 * 109.47189 * 179.97438 * 22 3 2 24 24 C 1.52997 * 109.47205 * 300.00536 * 22 3 2 25 25 O 1.42904 * 109.46534 * 60.00509 * 22 3 2 26 26 H 1.08994 * 109.47297 * 60.00254 * 1 2 3 27 27 H 1.08997 * 109.47088 * 299.99419 * 1 2 3 28 28 H 1.09007 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46956 * 120.00541 * 2 1 3 30 30 H 1.09003 * 109.46771 * 239.99743 * 2 1 3 31 31 H 0.96997 * 120.00094 * 265.00078 * 5 3 2 32 32 H 1.07993 * 119.94858 * 359.97438 * 9 8 6 33 33 H 1.08000 * 120.05367 * 180.24663 * 10 9 8 34 34 H 0.97000 * 120.00100 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.05017 * 179.97438 * 20 11 10 36 36 H 1.08007 * 119.94339 * 180.02562 * 21 20 11 37 37 H 1.08999 * 109.47413 * 60.00418 * 23 22 3 38 38 H 1.09001 * 109.47388 * 180.02562 * 23 22 3 39 39 H 1.08998 * 109.47292 * 300.00480 * 23 22 3 40 40 H 1.09000 * 109.47197 * 59.99961 * 24 22 3 41 41 H 1.09004 * 109.46620 * 179.97438 * 24 22 3 42 42 H 1.09002 * 109.47341 * 299.99331 * 24 22 3 43 43 H 0.96700 * 113.99805 * 180.02562 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9814 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3669 7 8 -0.3412 2.6326 -0.4316 8 6 0.0443 3.3241 -2.6285 9 6 0.9422 3.3645 -3.7021 10 6 0.5838 3.9675 -4.8709 11 6 -0.6880 4.5613 -4.9935 12 6 -1.0611 5.1926 -6.1991 13 1 -1.8158 5.9652 -6.1929 14 6 -0.4521 4.8169 -7.4050 15 7 0.1845 3.6791 -7.4886 16 14 -0.5510 5.9433 -8.8919 17 1 0.0749 7.2498 -8.5657 18 1 0.1683 5.3214 -10.0326 19 1 -1.9743 6.1543 -9.2592 20 6 -1.5859 4.5231 -3.9084 21 6 -1.2210 3.9120 -2.7459 22 6 3.5648 1.4443 0.1258 23 6 4.0749 2.8867 0.1252 24 6 3.9695 0.7602 1.4331 25 8 4.1346 0.7377 -0.9779 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.2719 2.1232 -1.9977 32 1 1.9188 2.9137 -3.6054 33 1 1.2755 3.9947 -5.6999 34 1 0.6061 3.4193 -8.3227 35 1 -2.5617 4.9773 -3.9976 36 1 -1.9088 3.8818 -1.9138 37 1 3.6403 3.4262 0.9667 38 1 5.1612 2.8881 0.2143 39 1 3.7865 3.3737 -0.8064 40 1 3.6062 -0.2675 1.4330 41 1 5.0559 0.7612 1.5224 42 1 3.5350 1.2992 2.2750 43 1 5.1007 0.6984 -0.9633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294240843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = -106.481311 kcal Electronic energy + Delta-G solvation = -23602.000744 eV Core-core repulsion = 20224.227407 eV Total energy + Delta-G solvation = -3377.773337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20933 -39.59499 -38.62436 -35.87239 -35.63801 -33.60079 -32.63254 -31.73972 -31.28333 -28.26346 -28.09735 -26.75037 -23.76267 -22.82630 -22.62490 -21.28651 -21.06474 -19.35664 -18.40099 -17.68734 -17.18406 -16.94503 -16.39458 -15.87927 -15.72210 -15.43550 -15.04162 -14.87462 -14.59815 -14.39878 -14.16073 -13.86313 -13.73507 -13.38265 -13.29210 -13.16446 -12.97836 -12.84522 -12.70687 -12.56431 -12.52609 -12.35389 -12.24803 -11.77642 -11.67142 -11.52372 -11.35299 -11.10463 -10.92689 -10.56018 -9.85644 -9.56679 -9.38936 -8.78433 -6.47749 0.47563 1.15108 1.38752 1.44946 1.52199 2.14908 2.20248 2.45035 2.81272 3.29930 3.61257 3.70225 3.90216 4.05664 4.21925 4.25184 4.31609 4.39375 4.45595 4.53358 4.69535 4.73353 4.79808 4.88031 4.92333 4.98645 5.02120 5.03294 5.10819 5.17284 5.21742 5.29316 5.33013 5.38458 5.48623 5.58666 5.73249 5.84526 5.96250 6.00166 6.23304 6.54438 6.77251 6.79928 6.90094 6.94756 7.54192 8.16766 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.003711 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.744173 B = 7543.117737 C = 8109.925203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.080 0.920 5 N -0.714 5.714 6 C 0.573 3.427 7 O -0.593 6.593 8 C -0.292 4.292 9 C -0.055 4.055 10 C -0.198 4.198 11 C 0.102 3.898 12 C -0.477 4.477 13 H 0.085 0.915 14 C 0.038 3.962 15 N -0.800 5.800 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.264 1.264 19 H -0.259 1.259 20 C -0.254 4.254 21 C -0.033 4.033 22 C 0.127 3.873 23 C -0.177 4.177 24 C -0.173 4.173 25 O -0.569 6.569 26 H 0.027 0.973 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.297 0.703 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.414 -4.751 9.391 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.052 3.948 4 H 0.098 0.902 5 N -0.365 5.365 6 C 0.366 3.634 7 O -0.477 6.477 8 C -0.297 4.297 9 C -0.074 4.074 10 C -0.217 4.217 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.423 5.423 16 Si 0.808 3.192 17 H -0.182 1.182 18 H -0.188 1.188 19 H -0.183 1.183 20 C -0.273 4.273 21 C -0.052 4.052 22 C 0.086 3.914 23 C -0.235 4.235 24 C -0.230 4.230 25 O -0.378 6.378 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.241 0.759 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 10.408 -5.032 9.740 15.117 hybrid contribution 0.366 0.526 -0.936 1.134 sum 10.773 -4.505 8.804 14.625 Atomic orbital electron populations 1.21753 0.96679 1.00286 1.01193 1.21902 0.95101 0.96079 1.03068 1.21113 0.93083 0.93515 0.87068 0.90231 1.45746 1.16085 1.57653 1.17013 1.18258 0.81328 0.76820 0.87020 1.90613 1.52655 1.62771 1.41710 1.19263 0.98500 1.16265 0.95654 1.20697 0.97472 0.96738 0.92470 1.20995 0.97166 1.06159 0.97394 1.18116 0.91000 0.88353 0.92670 1.20091 1.19945 1.18322 0.92079 0.89664 1.26931 0.91837 0.95735 1.03559 1.69767 1.23880 1.18946 1.29724 0.85155 0.79970 0.78656 0.75456 1.18197 1.18754 1.18268 1.20851 0.99892 1.10790 0.95772 1.20501 0.94660 0.93971 0.96078 1.21347 0.90760 0.91602 0.87708 1.22464 1.02592 0.96026 1.02375 1.22480 1.03235 1.01552 0.95778 1.86545 1.26803 1.77356 1.47103 0.95377 0.93425 0.92576 0.88909 0.91938 0.75880 0.86570 0.86985 0.89207 0.87853 0.87869 0.91848 0.89743 0.93353 0.91095 0.89788 0.91108 0.75645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 8.51 71.98 0.61 -3.93 16 2 C -0.12 -3.28 5.18 30.59 0.16 -3.12 16 3 C 0.16 4.31 1.62 44.99 0.07 4.38 16 4 H 0.08 2.41 7.58 -2.39 -0.02 2.40 16 5 N -0.71 -24.08 4.25 -445.60 -1.90 -25.98 16 6 C 0.57 24.33 6.33 86.72 0.55 24.88 16 7 O -0.59 -27.51 13.46 -3.99 -0.05 -27.56 16 8 C -0.29 -13.72 5.89 -19.93 -0.12 -13.84 16 9 C -0.05 -2.51 9.47 22.25 0.21 -2.30 16 10 C -0.20 -10.07 8.64 22.47 0.19 -9.88 16 11 C 0.10 5.41 5.58 -21.28 -0.12 5.29 16 12 C -0.48 -24.57 9.04 23.46 0.21 -24.36 16 13 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 14 C 0.04 1.81 5.14 85.35 0.44 2.25 16 15 N -0.80 -39.03 10.95 21.87 0.24 -38.79 16 16 Si 0.99 35.29 29.60 68.60 2.03 37.32 16 17 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 20 C -0.25 -12.88 9.73 22.47 0.22 -12.66 16 21 C -0.03 -1.62 9.52 22.25 0.21 -1.41 16 22 C 0.13 2.45 0.78 -10.80 -0.01 2.44 16 23 C -0.18 -3.34 8.66 71.98 0.62 -2.71 16 24 C -0.17 -2.36 8.47 71.98 0.61 -1.75 16 25 O -0.57 -10.83 11.91 -148.98 -1.77 -12.60 16 26 H 0.03 1.09 5.65 -2.39 -0.01 1.08 16 27 H 0.05 1.57 7.84 -2.39 -0.02 1.56 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.93 6.17 -2.39 -0.01 1.92 16 30 H 0.06 1.76 7.84 -2.39 -0.02 1.74 16 31 H 0.40 13.06 5.99 -92.71 -0.55 12.51 16 32 H 0.12 4.53 6.37 -2.91 -0.02 4.52 16 33 H 0.11 5.78 6.16 -2.91 -0.02 5.77 16 34 H 0.30 12.90 8.29 -92.71 -0.77 12.13 16 35 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.10 4.91 7.63 -2.91 -0.02 4.88 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.12 7.44 -2.39 -0.02 1.11 16 40 H 0.07 0.98 6.32 -2.39 -0.02 0.97 16 41 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.39 4.03 9.04 -74.06 -0.67 3.36 16 Total: -1.00 -62.74 343.05 2.22 -60.52 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.19 Total: 43.81 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.87 Total: -36.71 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -1.66 Total: -64.77 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.83 Total: -40.16 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -62.74 2.22 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294240843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.966 kcal (2) G-P(sol) polarization free energy of solvation -62.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds