Wall clock time and date at job start Tue Mar 31 2020 07:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00205 * 2 1 4 4 C 1.52999 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47559 * 59.99975 * 4 3 2 6 6 C 1.52991 * 109.47121 * 299.99553 * 4 3 2 7 7 N 1.46504 * 109.46999 * 179.97438 * 4 3 2 8 8 C 1.46505 * 119.99859 * 359.97438 * 7 4 3 9 9 C 1.34780 * 120.00008 * 179.97438 * 7 4 3 10 10 O 1.21544 * 120.00000 * 4.17822 * 9 7 4 11 11 C 1.47886 * 119.99929 * 184.18193 * 9 7 4 12 12 C 1.39919 * 120.02744 * 141.72529 * 11 9 7 13 13 C 1.38327 * 120.35717 * 180.02562 * 12 11 9 14 14 C 1.37746 * 120.41649 * 359.97438 * 13 12 11 15 15 C 1.40750 * 120.03668 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.17672 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00351 * 149.36601 * 16 15 14 18 18 C 1.39933 * 119.99882 * 329.36304 * 16 15 14 19 19 N 1.30835 * 120.00073 * 344.30979 * 18 16 15 20 20 Si 1.86804 * 120.00254 * 164.31413 * 18 16 15 21 21 H 1.48501 * 109.47139 * 84.98172 * 20 18 16 22 22 H 1.48493 * 109.47188 * 204.98592 * 20 18 16 23 23 H 1.48503 * 109.46632 * 324.98872 * 20 18 16 24 24 C 1.38997 * 120.02133 * 321.74348 * 11 9 7 25 25 H 1.08995 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47034 * 300.00567 * 1 2 3 27 27 H 1.09005 * 109.46776 * 60.00194 * 1 2 3 28 28 H 1.08997 * 109.47044 * 59.99959 * 3 2 1 29 29 H 1.09005 * 109.46941 * 299.99542 * 3 2 1 30 30 H 1.08998 * 109.47387 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46959 * 299.99982 * 5 4 3 32 32 H 1.08999 * 109.47162 * 59.99648 * 5 4 3 33 33 H 1.08999 * 109.47662 * 300.00119 * 6 4 3 34 34 H 1.09003 * 109.47315 * 60.00554 * 6 4 3 35 35 H 1.09008 * 109.47458 * 180.02562 * 6 4 3 36 36 H 1.08996 * 109.46979 * 266.72974 * 8 7 4 37 37 H 1.09001 * 109.46896 * 26.73489 * 8 7 4 38 38 H 1.08998 * 109.46817 * 146.73242 * 8 7 4 39 39 H 1.08001 * 119.81692 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.78983 * 180.02562 * 13 12 11 41 41 H 1.07996 * 119.98236 * 180.02562 * 14 13 12 42 42 H 0.97000 * 119.99725 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.20637 * 359.70719 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9865 0.4254 -1.2501 6 6 3.9874 0.4251 1.2483 7 7 4.1314 2.5228 -0.0013 8 6 3.2703 3.7081 -0.0018 9 6 5.4719 2.6636 -0.0014 10 8 6.1859 1.6830 -0.0777 11 6 6.0738 4.0113 0.0914 12 6 7.2331 4.2096 0.8492 13 6 7.8016 5.4674 0.9411 14 6 7.2337 6.5388 0.2876 15 6 6.0674 6.3586 -0.4794 16 6 5.4821 7.4565 -1.1520 17 1 4.9476 7.3004 -2.0774 18 6 5.5955 8.7452 -0.6184 19 7 5.9611 8.9076 0.6273 20 14 5.2248 10.2336 -1.6846 21 1 3.7653 10.5067 -1.6631 22 1 5.9571 11.4137 -1.1590 23 1 5.6573 9.9634 -3.0793 24 6 5.4879 5.0819 -0.5739 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8901 30 1 5.0731 0.3397 -1.2508 31 1 3.5431 -0.5704 -1.2501 32 1 3.6645 0.9665 -2.1399 33 1 3.6662 0.9659 2.1385 34 1 3.5441 -0.5707 1.2483 35 1 5.0741 0.3393 1.2481 36 1 3.1042 4.0360 -1.0279 37 1 2.3143 3.4628 0.4607 38 1 3.7520 4.5073 0.5616 39 1 7.6861 3.3764 1.3658 40 1 8.6968 5.6100 1.5282 41 1 7.6836 7.5176 0.3639 42 1 6.0400 9.8008 0.9970 43 1 4.5955 4.9326 -1.1635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294259306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:35 Heat of formation + Delta-G solvation = -52.011950 kcal Electronic energy + Delta-G solvation = -23803.982560 eV Core-core repulsion = 20428.571192 eV Total energy + Delta-G solvation = -3375.411368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17954 -38.23629 -37.14251 -35.68146 -33.73729 -32.73419 -29.96438 -29.36116 -27.99372 -27.05775 -26.47028 -25.45231 -24.99775 -22.81646 -20.91593 -20.24224 -18.50903 -17.17323 -16.90035 -16.04926 -15.99779 -15.47126 -15.28673 -14.93640 -14.86043 -14.54063 -13.76253 -13.57667 -13.27733 -13.03344 -12.87226 -12.61806 -12.35554 -12.10602 -12.04087 -11.74705 -11.68844 -11.58843 -11.39935 -11.21148 -11.03198 -10.93444 -10.73145 -10.69147 -10.54228 -10.12558 -9.84609 -9.54767 -9.25678 -8.88954 -8.28351 -7.61268 -7.49269 -6.82547 -4.46872 2.27509 2.72011 3.03639 3.05674 3.08039 3.11773 3.64594 3.87327 3.89909 4.56611 4.73236 4.86071 5.12881 5.13437 5.15517 5.32954 5.38431 5.45186 5.50046 5.54900 5.59138 5.81489 5.95888 5.99421 6.06326 6.12915 6.18047 6.21703 6.36736 6.48978 6.56878 6.73831 6.85313 6.87492 6.99436 7.05866 7.14826 7.33765 7.60837 7.76440 7.88721 7.93784 8.07459 8.47717 8.76565 8.77498 8.82139 10.14977 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.004171 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.631838 B = 6711.742078 C = 7690.752543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.179 3.821 5 C -0.158 4.158 6 C -0.156 4.156 7 N -0.610 5.610 8 C 0.066 3.934 9 C 0.573 3.427 10 O -0.546 6.546 11 C -0.114 4.114 12 C -0.176 4.176 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.105 3.895 16 C -0.470 4.470 17 H 0.078 0.922 18 C 0.078 3.922 19 N -0.800 5.800 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.192 4.192 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.281 0.719 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 -8.716 -0.042 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.015 4.015 4 C 0.095 3.905 5 C -0.216 4.216 6 C -0.214 4.214 7 N -0.345 5.345 8 C -0.076 4.076 9 C 0.365 3.635 10 O -0.425 6.425 11 C -0.117 4.117 12 C -0.196 4.196 13 C -0.133 4.133 14 C -0.153 4.153 15 C 0.103 3.897 16 C -0.500 4.500 17 H 0.096 0.904 18 C -0.139 4.139 19 N -0.426 5.426 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.212 4.212 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.752 -9.223 0.097 12.715 hybrid contribution -0.578 1.209 -0.359 1.387 sum -9.330 -8.014 -0.263 12.303 Atomic orbital electron populations 1.22742 0.80982 1.02682 1.00030 1.87842 1.19526 1.27318 1.95406 1.22797 0.93175 0.84810 1.00667 1.20102 0.90177 0.83008 0.97241 1.22171 1.04042 0.99754 0.95616 1.22124 1.03568 0.99943 0.95751 1.47844 1.06196 1.05561 1.74908 1.22308 0.94527 0.88612 1.02197 1.18846 0.80548 0.89817 0.74274 1.90609 1.60970 1.40660 1.50267 1.19289 0.97902 0.91128 1.03409 1.20374 0.97550 0.96558 1.05123 1.20657 0.99185 0.93097 1.00352 1.21420 0.95950 0.97583 1.00394 1.17520 0.90149 0.91503 0.90559 1.19465 1.31684 0.90903 1.07995 0.90392 1.25834 0.92876 1.00581 0.94605 1.69787 1.35387 1.24922 1.12517 0.86361 0.79220 0.80128 0.81231 1.19458 1.20196 1.18553 1.21554 1.00897 0.93039 1.05676 0.89593 0.94082 0.94061 0.92503 0.92577 0.89931 0.91542 0.93183 0.93078 0.91350 0.90467 0.92378 0.92063 0.88548 0.88484 0.88629 0.86717 0.90824 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.56 9.35 -35.23 -0.33 -4.89 16 3 C 0.06 0.77 3.53 37.16 0.13 0.90 16 4 C 0.18 2.68 0.87 -131.82 -0.11 2.57 16 5 C -0.16 -2.40 8.25 37.16 0.31 -2.09 16 6 C -0.16 -2.34 8.26 37.15 0.31 -2.03 16 7 N -0.61 -10.40 2.82 -167.69 -0.47 -10.87 16 8 C 0.07 1.00 8.09 59.85 0.48 1.48 16 9 C 0.57 11.82 6.77 -12.31 -0.08 11.74 16 10 O -0.55 -12.18 13.11 5.33 0.07 -12.11 16 11 C -0.11 -2.56 5.25 -105.04 -0.55 -3.11 16 12 C -0.18 -3.99 9.63 -38.92 -0.37 -4.36 16 13 C -0.11 -2.60 10.01 -39.73 -0.40 -3.00 16 14 C -0.13 -3.31 8.65 -38.81 -0.34 -3.64 16 15 C 0.10 2.62 5.50 -106.87 -0.59 2.03 16 16 C -0.47 -11.70 9.03 -37.73 -0.34 -12.04 16 17 H 0.08 1.86 7.89 -52.49 -0.41 1.45 16 18 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 19 N -0.80 -19.74 11.25 55.55 0.63 -19.12 16 20 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 24 C -0.19 -4.35 7.27 -38.44 -0.28 -4.63 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 29 H 0.06 0.65 7.76 -51.93 -0.40 0.25 16 30 H 0.08 1.45 6.03 -51.93 -0.31 1.14 16 31 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.08 1.33 6.31 -51.92 -0.33 1.00 16 36 H 0.06 0.84 6.93 -51.93 -0.36 0.48 16 37 H 0.06 0.74 5.61 -51.93 -0.29 0.45 16 38 H 0.10 1.68 5.73 -51.93 -0.30 1.38 16 39 H 0.10 2.10 8.04 -52.49 -0.42 1.68 16 40 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 41 H 0.11 2.91 6.54 -52.49 -0.34 2.56 16 42 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 43 H 0.11 2.24 5.27 -52.49 -0.28 1.96 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -27.74 340.16 -7.10 -34.84 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.28 Total: 7.22 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.81 Total: -13.03 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.15 Total: -29.99 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.26 Total: -17.00 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.74 -7.10 -34.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294259306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.173 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds