Wall clock time and date at job start Tue Mar 31 2020 07:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00205 * 2 1 4 4 C 1.52999 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47559 * 59.99975 * 4 3 2 6 6 C 1.52991 * 109.47121 * 299.99553 * 4 3 2 7 7 N 1.46504 * 109.46999 * 179.97438 * 4 3 2 8 8 C 1.46505 * 119.99859 * 359.97438 * 7 4 3 9 9 C 1.34780 * 120.00008 * 179.97438 * 7 4 3 10 10 O 1.21544 * 120.00000 * 4.17822 * 9 7 4 11 11 C 1.47886 * 119.99929 * 184.18193 * 9 7 4 12 12 C 1.39919 * 120.02744 * 141.72529 * 11 9 7 13 13 C 1.38327 * 120.35717 * 180.02562 * 12 11 9 14 14 C 1.37746 * 120.41649 * 359.97438 * 13 12 11 15 15 C 1.40750 * 120.03668 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.17672 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00351 * 149.36601 * 16 15 14 18 18 C 1.39933 * 119.99882 * 329.36304 * 16 15 14 19 19 N 1.30835 * 120.00073 * 344.30979 * 18 16 15 20 20 Si 1.86804 * 120.00254 * 164.31413 * 18 16 15 21 21 H 1.48501 * 109.47139 * 84.98172 * 20 18 16 22 22 H 1.48493 * 109.47188 * 204.98592 * 20 18 16 23 23 H 1.48503 * 109.46632 * 324.98872 * 20 18 16 24 24 C 1.38997 * 120.02133 * 321.74348 * 11 9 7 25 25 H 1.08995 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47034 * 300.00567 * 1 2 3 27 27 H 1.09005 * 109.46776 * 60.00194 * 1 2 3 28 28 H 1.08997 * 109.47044 * 59.99959 * 3 2 1 29 29 H 1.09005 * 109.46941 * 299.99542 * 3 2 1 30 30 H 1.08998 * 109.47387 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46959 * 299.99982 * 5 4 3 32 32 H 1.08999 * 109.47162 * 59.99648 * 5 4 3 33 33 H 1.08999 * 109.47662 * 300.00119 * 6 4 3 34 34 H 1.09003 * 109.47315 * 60.00554 * 6 4 3 35 35 H 1.09008 * 109.47458 * 180.02562 * 6 4 3 36 36 H 1.08996 * 109.46979 * 266.72974 * 8 7 4 37 37 H 1.09001 * 109.46896 * 26.73489 * 8 7 4 38 38 H 1.08998 * 109.46817 * 146.73242 * 8 7 4 39 39 H 1.08001 * 119.81692 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.78983 * 180.02562 * 13 12 11 41 41 H 1.07996 * 119.98236 * 180.02562 * 14 13 12 42 42 H 0.97000 * 119.99725 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.20637 * 359.70719 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9865 0.4254 -1.2501 6 6 3.9874 0.4251 1.2483 7 7 4.1314 2.5228 -0.0013 8 6 3.2703 3.7081 -0.0018 9 6 5.4719 2.6636 -0.0014 10 8 6.1859 1.6830 -0.0777 11 6 6.0738 4.0113 0.0914 12 6 7.2331 4.2096 0.8492 13 6 7.8016 5.4674 0.9411 14 6 7.2337 6.5388 0.2876 15 6 6.0674 6.3586 -0.4794 16 6 5.4821 7.4565 -1.1520 17 1 4.9476 7.3004 -2.0774 18 6 5.5955 8.7452 -0.6184 19 7 5.9611 8.9076 0.6273 20 14 5.2248 10.2336 -1.6846 21 1 3.7653 10.5067 -1.6631 22 1 5.9571 11.4137 -1.1590 23 1 5.6573 9.9634 -3.0793 24 6 5.4879 5.0819 -0.5739 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8901 30 1 5.0731 0.3397 -1.2508 31 1 3.5431 -0.5704 -1.2501 32 1 3.6645 0.9665 -2.1399 33 1 3.6662 0.9659 2.1385 34 1 3.5441 -0.5707 1.2483 35 1 5.0741 0.3393 1.2481 36 1 3.1042 4.0360 -1.0279 37 1 2.3143 3.4628 0.4607 38 1 3.7520 4.5073 0.5616 39 1 7.6861 3.3764 1.3658 40 1 8.6968 5.6100 1.5282 41 1 7.6836 7.5176 0.3639 42 1 6.0400 9.8008 0.9970 43 1 4.5955 4.9326 -1.1635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294259306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:34 Heat of formation + Delta-G solvation = -66.794427 kcal Electronic energy + Delta-G solvation = -23804.623576 eV Core-core repulsion = 20428.571192 eV Total energy + Delta-G solvation = -3376.052384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61804 -39.48383 -38.69020 -37.01441 -35.51816 -34.11233 -31.79829 -31.06021 -29.01494 -28.26949 -27.51906 -27.14320 -26.14341 -24.42584 -22.65933 -21.80948 -20.00307 -18.80890 -17.95653 -17.53077 -17.17226 -16.95324 -16.58554 -16.43877 -16.29870 -15.79899 -15.21929 -14.99364 -14.62001 -14.48248 -14.41007 -14.04746 -13.71511 -13.53409 -13.37074 -13.10002 -13.00962 -12.81622 -12.69819 -12.63861 -12.49323 -12.39121 -12.23510 -12.17080 -11.93749 -11.68029 -11.33408 -11.03308 -10.65955 -10.49009 -9.68754 -9.41637 -9.33564 -8.61464 -6.35500 0.50452 0.95004 1.43084 1.49249 1.56358 1.79106 1.99994 2.24745 2.76896 2.91779 3.58129 3.66349 3.80685 3.95665 4.03803 4.16358 4.34843 4.38624 4.47712 4.54867 4.59391 4.61403 4.66335 4.76086 4.80207 4.86143 4.90319 4.91724 4.96209 4.97375 5.01851 5.15512 5.25940 5.32980 5.35053 5.50328 5.67933 5.81685 5.97991 6.04451 6.16236 6.21978 6.38417 6.61931 6.92871 6.94734 7.20809 8.38005 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.004171 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.631838 B = 6711.742078 C = 7690.752543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.070 3.930 4 C 0.171 3.829 5 C -0.151 4.151 6 C -0.150 4.150 7 N -0.601 5.601 8 C 0.063 3.937 9 C 0.569 3.431 10 O -0.569 6.569 11 C -0.119 4.119 12 C -0.188 4.188 13 C -0.113 4.113 14 C -0.158 4.158 15 C 0.080 3.920 16 C -0.499 4.499 17 H 0.081 0.919 18 C 0.041 3.959 19 N -0.830 5.830 20 Si 0.977 3.023 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.261 1.261 24 C -0.187 4.187 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.288 0.712 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.468 -8.836 -0.490 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.007 4.007 4 C 0.087 3.913 5 C -0.209 4.209 6 C -0.208 4.208 7 N -0.334 5.334 8 C -0.078 4.078 9 C 0.360 3.640 10 O -0.450 6.450 11 C -0.122 4.122 12 C -0.208 4.208 13 C -0.131 4.131 14 C -0.178 4.178 15 C 0.078 3.922 16 C -0.528 4.528 17 H 0.099 0.901 18 C -0.174 4.174 19 N -0.456 5.456 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.185 1.185 24 C -0.207 4.207 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.007 -9.356 -0.344 14.450 hybrid contribution 0.069 1.133 -0.177 1.148 sum -10.938 -8.223 -0.520 13.694 Atomic orbital electron populations 1.22961 0.79020 1.04043 1.00981 1.87811 1.21578 1.26871 1.95586 1.22652 0.90727 0.85530 1.01775 1.20314 0.92359 0.81584 0.97001 1.22083 1.02164 1.00751 0.95936 1.22050 1.01769 1.00934 0.96023 1.47842 1.05172 1.07237 1.73156 1.22391 0.95387 0.87268 1.02785 1.18626 0.81878 0.88699 0.74781 1.90605 1.61942 1.40877 1.51560 1.19574 0.97809 0.92178 1.02682 1.20575 0.97998 0.96731 1.05476 1.20865 0.99706 0.92638 0.99905 1.21392 0.96721 0.97538 1.02114 1.17858 0.90593 0.92629 0.91152 1.19726 1.32746 0.91887 1.08465 0.90089 1.26624 0.92248 1.02975 0.95544 1.69845 1.35867 1.25968 1.13928 0.85288 0.79374 0.76398 0.79122 1.18472 1.19627 1.18531 1.21705 1.01197 0.92371 1.05420 0.88157 0.93086 0.93111 0.91325 0.91460 0.92784 0.90072 0.92852 0.92668 0.89872 0.93223 0.91422 0.88416 0.90994 0.87799 0.86433 0.88104 0.90192 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.26 9.35 -148.98 -1.39 -9.65 16 3 C 0.07 1.50 3.53 71.98 0.25 1.75 16 4 C 0.17 4.83 0.87 3.60 0.00 4.83 16 5 C -0.15 -4.42 8.25 71.98 0.59 -3.83 16 6 C -0.15 -4.32 8.26 71.98 0.59 -3.72 16 7 N -0.60 -19.76 2.82 -802.73 -2.27 -22.03 16 8 C 0.06 1.80 8.09 127.77 1.03 2.83 16 9 C 0.57 23.47 6.77 86.80 0.59 24.06 16 10 O -0.57 -25.71 13.11 -3.86 -0.05 -25.76 16 11 C -0.12 -5.38 5.25 -20.13 -0.11 -5.49 16 12 C -0.19 -8.61 9.63 22.70 0.22 -8.40 16 13 C -0.11 -5.21 10.01 22.17 0.22 -4.99 16 14 C -0.16 -8.00 8.65 22.77 0.20 -7.81 16 15 C 0.08 4.06 5.50 -21.32 -0.12 3.94 16 16 C -0.50 -25.03 9.03 23.47 0.21 -24.82 16 17 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 18 C 0.04 1.94 5.13 85.25 0.44 2.38 16 19 N -0.83 -41.35 11.25 21.82 0.25 -41.10 16 20 Si 0.98 36.19 29.59 68.60 2.03 38.22 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 C -0.19 -8.56 7.27 23.01 0.17 -8.39 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 1.31 6.91 -2.39 -0.02 1.29 16 29 H 0.07 1.30 7.76 -2.38 -0.02 1.28 16 30 H 0.05 1.90 6.03 -2.39 -0.01 1.88 16 31 H 0.08 2.10 7.68 -2.38 -0.02 2.08 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.12 7.68 -2.39 -0.02 2.10 16 35 H 0.05 1.71 6.31 -2.38 -0.02 1.69 16 36 H 0.07 1.81 6.93 -2.39 -0.02 1.80 16 37 H 0.10 2.06 5.61 -2.39 -0.01 2.05 16 38 H 0.07 2.45 5.73 -2.39 -0.01 2.44 16 39 H 0.10 4.55 8.04 -2.91 -0.02 4.53 16 40 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 41 H 0.10 5.30 6.54 -2.91 -0.02 5.28 16 42 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 43 H 0.12 5.12 5.27 -2.91 -0.02 5.10 16 Total: -1.00 -60.40 340.16 5.12 -55.29 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.01 Total: 31.08 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 5.55 Total: -26.06 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -2.02 Total: -63.13 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.44 Total: -35.41 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -60.40 5.12 -55.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294259306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.507 kcal (2) G-P(sol) polarization free energy of solvation -60.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds