Wall clock time and date at job start Tue Mar 31 2020 07:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99900 * 2 1 4 4 C 1.52993 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47324 * 59.99625 * 4 3 2 6 6 C 1.53007 * 109.46996 * 300.00100 * 4 3 2 7 7 N 1.46497 * 109.47326 * 180.02562 * 4 3 2 8 8 C 1.46502 * 120.00310 * 114.03429 * 7 4 3 9 9 C 1.34778 * 119.99709 * 294.03066 * 7 4 3 10 10 O 1.21587 * 119.99714 * 171.07835 * 9 7 4 11 11 C 1.47642 * 120.00141 * 351.07600 * 9 7 4 12 12 C 1.40012 * 119.89132 * 262.81421 * 11 9 7 13 13 C 1.36320 * 120.09987 * 180.25311 * 12 11 9 14 14 C 1.40887 * 119.89301 * 359.48049 * 13 12 11 15 15 C 1.41108 * 120.10153 * 180.29132 * 14 13 12 16 16 H 1.08009 * 119.99568 * 156.77907 * 15 14 13 17 17 C 1.40223 * 120.00390 * 336.77901 * 15 14 13 18 18 N 1.30641 * 120.00109 * 331.10256 * 17 15 14 19 19 Si 1.86800 * 120.00081 * 151.10113 * 17 15 14 20 20 H 1.48500 * 109.47163 * 89.99966 * 19 17 15 21 21 H 1.48501 * 109.47215 * 210.00200 * 19 17 15 22 22 H 1.48499 * 109.47200 * 330.00284 * 19 17 15 23 23 C 1.40891 * 119.79471 * 0.27499 * 14 13 12 24 24 C 1.36318 * 119.88681 * 359.97438 * 23 14 13 25 25 H 1.09009 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47512 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47426 * 60.00575 * 1 2 3 28 28 H 1.09001 * 109.47141 * 60.00072 * 3 2 1 29 29 H 1.08998 * 109.47169 * 300.00460 * 3 2 1 30 30 H 1.09000 * 109.47109 * 298.95924 * 5 4 3 31 31 H 1.09005 * 109.46590 * 58.95439 * 5 4 3 32 32 H 1.08997 * 109.47130 * 178.95346 * 5 4 3 33 33 H 1.09005 * 109.47184 * 227.51376 * 6 4 3 34 34 H 1.08996 * 109.47154 * 347.51302 * 6 4 3 35 35 H 1.08998 * 109.47419 * 107.51837 * 6 4 3 36 36 H 1.08998 * 109.46993 * 258.64985 * 8 7 4 37 37 H 1.09000 * 109.46912 * 18.64427 * 8 7 4 38 38 H 1.08998 * 109.47328 * 138.64244 * 8 7 4 39 39 H 1.07999 * 119.95234 * 0.03389 * 12 11 9 40 40 H 1.08003 * 120.05372 * 179.74936 * 13 12 11 41 41 H 0.97001 * 120.00532 * 179.97438 * 18 17 15 42 42 H 1.07993 * 120.05102 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.93882 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4252 1.2483 7 7 4.1312 2.5231 0.0000 8 6 4.9016 2.9814 1.1587 9 6 3.9706 3.3326 -1.0655 10 8 4.3220 4.4950 -1.0043 11 6 3.3680 2.8080 -2.3071 12 6 4.1912 2.3872 -3.3586 13 6 3.6393 1.9070 -4.5088 14 6 2.2385 1.8243 -4.6343 15 6 1.6627 1.3221 -5.8206 16 1 0.6652 0.9081 -5.8035 17 6 2.3853 1.3606 -7.0217 18 7 3.2764 2.2954 -7.2183 19 14 2.0738 0.0751 -8.3408 20 1 1.0069 0.5536 -9.2562 21 1 3.3216 -0.1551 -9.1122 22 1 1.6450 -1.1953 -7.7024 23 6 1.4144 2.2442 -3.5715 24 6 1.9754 2.7278 -2.4271 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.5580 -0.5766 -1.2408 31 1 3.6483 0.9570 -2.1398 32 1 5.0741 0.3558 -1.2600 33 1 4.8081 0.9628 1.7234 34 1 3.1538 0.3445 1.9460 35 1 4.3223 -0.5727 0.9654 36 1 4.2857 3.6459 1.7647 37 1 5.2051 2.1218 1.7563 38 1 5.7872 3.5174 0.8173 39 1 5.2651 2.4465 -3.2596 40 1 4.2750 1.5864 -5.3210 41 1 3.7766 2.3219 -8.0490 42 1 0.3402 2.1822 -3.6631 43 1 1.3445 3.0495 -1.6117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294269205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:38 Heat of formation + Delta-G solvation = -18.679772 kcal Electronic energy + Delta-G solvation = -24675.264277 eV Core-core repulsion = 21301.298301 eV Total energy + Delta-G solvation = -3373.965976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31194 -37.70691 -37.36989 -35.94251 -33.99019 -31.61838 -30.59287 -29.96390 -28.19350 -27.11550 -25.92070 -25.49695 -24.79197 -21.88367 -21.15998 -20.63287 -18.17302 -17.64878 -16.86845 -16.17602 -15.84768 -15.40566 -15.28315 -15.02143 -14.45794 -14.30323 -13.98821 -13.54781 -13.05771 -12.98403 -12.81725 -12.53333 -12.34142 -12.24670 -12.15986 -11.74277 -11.55791 -11.36767 -11.29533 -11.21332 -11.05548 -10.80548 -10.69267 -10.59421 -10.22719 -9.91639 -9.63108 -9.27200 -9.06296 -9.00318 -8.28656 -7.61160 -7.46462 -7.05428 -4.50972 2.48828 2.90880 2.94495 2.98104 3.06371 3.26972 3.35469 3.77629 4.21449 4.35119 4.96375 5.08785 5.17757 5.29743 5.44921 5.46816 5.48054 5.61671 5.68825 5.74236 5.82475 5.89576 5.98124 5.99691 6.13134 6.15796 6.20575 6.28244 6.41413 6.48762 6.76366 6.84405 6.91522 6.98974 7.06285 7.15516 7.37612 7.40664 7.56582 7.79413 7.84317 7.92513 8.05259 8.39802 8.65982 8.75310 8.82156 9.88253 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.005322 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.557632 B = 5259.812266 C = 6026.705297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.018 3.982 4 C 0.183 3.817 5 C -0.189 4.189 6 C -0.170 4.170 7 N -0.612 5.612 8 C 0.069 3.931 9 C 0.584 3.416 10 O -0.551 6.551 11 C -0.268 4.268 12 C -0.052 4.052 13 C -0.178 4.178 14 C 0.127 3.873 15 C -0.454 4.454 16 H 0.085 0.915 17 C 0.084 3.916 18 N -0.760 5.760 19 Si 0.901 3.099 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.230 4.230 24 C -0.056 4.056 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.287 0.713 42 H 0.096 0.904 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -5.521 10.423 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.059 4.059 4 C 0.098 3.902 5 C -0.245 4.245 6 C -0.226 4.226 7 N -0.347 5.347 8 C -0.073 4.073 9 C 0.375 3.625 10 O -0.428 6.428 11 C -0.272 4.272 12 C -0.071 4.071 13 C -0.197 4.197 14 C 0.124 3.876 15 C -0.481 4.481 16 H 0.103 0.897 17 C -0.139 4.139 18 N -0.382 5.382 19 Si 0.725 3.275 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.250 4.250 24 C -0.075 4.075 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.186 -4.956 10.291 11.424 hybrid contribution -0.323 -0.280 -0.476 0.640 sum -0.510 -5.236 9.815 11.136 Atomic orbital electron populations 1.22692 0.81488 1.02298 0.99864 1.87784 1.19147 1.27585 1.95457 1.23984 0.93688 0.85455 1.02725 1.20043 0.90848 0.82020 0.97261 1.22970 1.00423 1.01034 1.00113 1.22593 1.02154 1.00858 0.97035 1.48094 1.53679 1.15659 1.17311 1.21910 0.96290 0.99931 0.89216 1.18825 0.76355 0.84380 0.82971 1.90676 1.51031 1.17337 1.83744 1.18559 0.93846 1.19465 0.95352 1.20109 0.96825 0.97325 0.92835 1.20750 0.95192 1.07135 0.96652 1.17600 0.91563 0.86582 0.91886 1.19680 1.02044 1.34385 0.92034 0.89735 1.26045 0.93369 0.94604 0.99899 1.69809 1.17394 1.25552 1.25438 0.86418 0.79080 0.82115 0.79933 1.19221 1.19807 1.17975 1.20520 0.97883 1.10600 0.95982 1.19976 0.92407 0.98815 0.96279 0.89932 0.94839 0.93661 0.94504 0.88168 0.91805 0.86395 0.93456 0.90285 0.91992 0.91292 0.93321 0.89271 0.91689 0.89147 0.87131 0.90157 0.88553 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -5.96 9.62 -35.23 -0.34 -6.30 16 3 C 0.02 0.29 4.51 37.15 0.17 0.46 16 4 C 0.18 2.91 0.86 -131.82 -0.11 2.79 16 5 C -0.19 -3.29 7.41 37.16 0.28 -3.01 16 6 C -0.17 -2.14 8.94 37.16 0.33 -1.80 16 7 N -0.61 -10.55 2.82 -167.77 -0.47 -11.02 16 8 C 0.07 0.95 9.87 59.85 0.59 1.54 16 9 C 0.58 12.42 6.62 -12.42 -0.08 12.34 16 10 O -0.55 -13.35 17.00 5.29 0.09 -13.26 16 11 C -0.27 -5.94 2.91 -104.73 -0.30 -6.24 16 12 C -0.05 -1.19 7.58 -39.61 -0.30 -1.49 16 13 C -0.18 -4.35 8.57 -39.27 -0.34 -4.69 16 14 C 0.13 3.15 5.56 -106.80 -0.59 2.55 16 15 C -0.45 -11.19 8.97 -37.75 -0.34 -11.53 16 16 H 0.08 1.99 7.99 -52.48 -0.42 1.57 16 17 C 0.08 1.97 4.86 -17.31 -0.08 1.88 16 18 N -0.76 -18.49 11.60 55.56 0.64 -17.84 16 19 Si 0.90 17.24 29.65 -169.99 -5.04 12.20 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 24 C -0.06 -1.22 6.70 -39.61 -0.27 -1.48 16 25 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 1.80 2.19 -52.62 -0.12 1.69 16 30 H 0.06 1.08 7.71 -51.93 -0.40 0.68 16 31 H 0.12 2.38 2.61 -51.93 -0.14 2.24 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.86 4.26 -51.93 -0.22 0.64 16 34 H 0.06 0.75 7.57 -51.93 -0.39 0.35 16 35 H 0.07 0.84 7.64 -51.93 -0.40 0.44 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.96 4.53 -51.93 -0.24 0.72 16 38 H 0.06 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.11 2.76 6.47 -52.48 -0.34 2.42 16 41 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 42 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.09 1.85 6.57 -52.49 -0.34 1.51 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -28.32 334.85 -6.32 -34.64 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.93 Total: 9.35 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.32 Total: -12.80 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 0.17 Total: -28.87 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.25 Total: -19.56 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.04 Total: 12.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.32 -6.32 -34.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294269205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.964 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds