Wall clock time and date at job start Tue Mar 31 2020 07:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99900 * 2 1 4 4 C 1.52993 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47324 * 59.99625 * 4 3 2 6 6 C 1.53007 * 109.46996 * 300.00100 * 4 3 2 7 7 N 1.46497 * 109.47326 * 180.02562 * 4 3 2 8 8 C 1.46502 * 120.00310 * 114.03429 * 7 4 3 9 9 C 1.34778 * 119.99709 * 294.03066 * 7 4 3 10 10 O 1.21587 * 119.99714 * 171.07835 * 9 7 4 11 11 C 1.47642 * 120.00141 * 351.07600 * 9 7 4 12 12 C 1.40012 * 119.89132 * 262.81421 * 11 9 7 13 13 C 1.36320 * 120.09987 * 180.25311 * 12 11 9 14 14 C 1.40887 * 119.89301 * 359.48049 * 13 12 11 15 15 C 1.41108 * 120.10153 * 180.29132 * 14 13 12 16 16 H 1.08009 * 119.99568 * 156.77907 * 15 14 13 17 17 C 1.40223 * 120.00390 * 336.77901 * 15 14 13 18 18 N 1.30641 * 120.00109 * 331.10256 * 17 15 14 19 19 Si 1.86800 * 120.00081 * 151.10113 * 17 15 14 20 20 H 1.48500 * 109.47163 * 89.99966 * 19 17 15 21 21 H 1.48501 * 109.47215 * 210.00200 * 19 17 15 22 22 H 1.48499 * 109.47200 * 330.00284 * 19 17 15 23 23 C 1.40891 * 119.79471 * 0.27499 * 14 13 12 24 24 C 1.36318 * 119.88681 * 359.97438 * 23 14 13 25 25 H 1.09009 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47512 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47426 * 60.00575 * 1 2 3 28 28 H 1.09001 * 109.47141 * 60.00072 * 3 2 1 29 29 H 1.08998 * 109.47169 * 300.00460 * 3 2 1 30 30 H 1.09000 * 109.47109 * 298.95924 * 5 4 3 31 31 H 1.09005 * 109.46590 * 58.95439 * 5 4 3 32 32 H 1.08997 * 109.47130 * 178.95346 * 5 4 3 33 33 H 1.09005 * 109.47184 * 227.51376 * 6 4 3 34 34 H 1.08996 * 109.47154 * 347.51302 * 6 4 3 35 35 H 1.08998 * 109.47419 * 107.51837 * 6 4 3 36 36 H 1.08998 * 109.46993 * 258.64985 * 8 7 4 37 37 H 1.09000 * 109.46912 * 18.64427 * 8 7 4 38 38 H 1.08998 * 109.47328 * 138.64244 * 8 7 4 39 39 H 1.07999 * 119.95234 * 0.03389 * 12 11 9 40 40 H 1.08003 * 120.05372 * 179.74936 * 13 12 11 41 41 H 0.97001 * 120.00532 * 179.97438 * 18 17 15 42 42 H 1.07993 * 120.05102 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.93882 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4252 1.2483 7 7 4.1312 2.5231 0.0000 8 6 4.9016 2.9814 1.1587 9 6 3.9706 3.3326 -1.0655 10 8 4.3220 4.4950 -1.0043 11 6 3.3680 2.8080 -2.3071 12 6 4.1912 2.3872 -3.3586 13 6 3.6393 1.9070 -4.5088 14 6 2.2385 1.8243 -4.6343 15 6 1.6627 1.3221 -5.8206 16 1 0.6652 0.9081 -5.8035 17 6 2.3853 1.3606 -7.0217 18 7 3.2764 2.2954 -7.2183 19 14 2.0738 0.0751 -8.3408 20 1 1.0069 0.5536 -9.2562 21 1 3.3216 -0.1551 -9.1122 22 1 1.6450 -1.1953 -7.7024 23 6 1.4144 2.2442 -3.5715 24 6 1.9754 2.7278 -2.4271 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.5580 -0.5766 -1.2408 31 1 3.6483 0.9570 -2.1398 32 1 5.0741 0.3558 -1.2600 33 1 4.8081 0.9628 1.7234 34 1 3.1538 0.3445 1.9460 35 1 4.3223 -0.5727 0.9654 36 1 4.2857 3.6459 1.7647 37 1 5.2051 2.1218 1.7563 38 1 5.7872 3.5174 0.8173 39 1 5.2651 2.4465 -3.2596 40 1 4.2750 1.5864 -5.3210 41 1 3.7766 2.3219 -8.0490 42 1 0.3402 2.1822 -3.6631 43 1 1.3445 3.0495 -1.6117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294269205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:37 Heat of formation + Delta-G solvation = -34.776208 kcal Electronic energy + Delta-G solvation = -24675.962271 eV Core-core repulsion = 21301.298301 eV Total energy + Delta-G solvation = -3374.663970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83011 -39.11896 -39.04362 -37.32012 -35.75623 -32.96199 -32.29419 -31.74142 -29.57583 -28.29682 -27.39675 -26.89341 -26.05272 -23.53409 -22.92293 -22.17361 -19.71690 -19.40293 -18.24262 -17.56552 -17.20566 -17.03764 -16.63261 -16.40660 -15.98133 -15.73496 -15.49806 -15.04154 -14.62406 -14.31491 -14.18173 -13.96980 -13.91452 -13.73813 -13.61934 -13.28484 -13.07767 -12.85179 -12.65824 -12.59927 -12.33212 -12.27263 -11.99676 -11.89073 -11.77761 -11.48262 -11.25283 -10.88709 -10.75744 -10.43934 -9.69729 -9.38861 -9.25309 -8.81095 -6.36818 0.74618 1.08883 1.38531 1.45286 1.55757 1.61193 1.98348 2.17333 2.57635 3.02440 3.61042 3.79539 3.82415 3.96448 4.10899 4.21611 4.28076 4.33604 4.46955 4.58324 4.58730 4.62247 4.76304 4.84100 4.88001 4.90649 4.93777 5.00177 5.03568 5.06433 5.13302 5.15111 5.26163 5.36261 5.57674 5.59146 5.71347 5.81892 5.97564 6.01194 6.20791 6.22637 6.41781 6.56197 6.82504 6.92313 7.20809 8.15954 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.005322 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.557632 B = 5259.812266 C = 6026.705297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.021 3.979 4 C 0.177 3.823 5 C -0.186 4.186 6 C -0.162 4.162 7 N -0.601 5.601 8 C 0.062 3.938 9 C 0.581 3.419 10 O -0.588 6.588 11 C -0.265 4.265 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.103 3.897 15 C -0.487 4.487 16 H 0.086 0.914 17 C 0.048 3.952 18 N -0.796 5.796 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.255 1.255 23 C -0.241 4.241 24 C -0.049 4.049 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.296 0.704 42 H 0.106 0.894 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -6.801 12.104 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.055 4.055 4 C 0.093 3.907 5 C -0.243 4.243 6 C -0.218 4.218 7 N -0.334 5.334 8 C -0.079 4.079 9 C 0.371 3.629 10 O -0.469 6.469 11 C -0.269 4.269 12 C -0.072 4.072 13 C -0.214 4.214 14 C 0.100 3.900 15 C -0.514 4.514 16 H 0.104 0.896 17 C -0.173 4.173 18 N -0.419 5.419 19 Si 0.795 3.205 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.179 1.179 23 C -0.260 4.260 24 C -0.067 4.067 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.453 -6.260 12.011 13.552 hybrid contribution -0.255 0.118 -0.872 0.917 sum -0.708 -6.141 11.138 12.739 Atomic orbital electron populations 1.22894 0.79979 1.03793 1.00286 1.87763 1.20813 1.27111 1.95510 1.23820 0.93789 0.85792 1.02147 1.20219 0.90943 0.81301 0.98222 1.22868 1.00652 1.00979 0.99848 1.22543 1.03171 1.00760 0.95341 1.48071 1.52797 1.15544 1.17038 1.22202 0.95716 1.01736 0.88230 1.18655 0.76311 0.84214 0.83689 1.90656 1.52922 1.18817 1.84497 1.18747 0.94105 1.18179 0.95864 1.20181 0.97236 0.97033 0.92744 1.20664 0.95183 1.08643 0.96929 1.17906 0.92014 0.87234 0.92866 1.19938 1.02751 1.35799 0.92888 0.89569 1.26864 0.92731 0.95969 1.01719 1.69837 1.18410 1.27027 1.26609 0.85310 0.79229 0.79004 0.76951 1.18355 1.19030 1.17886 1.20683 0.98323 1.10899 0.96123 1.20163 0.92545 0.97740 0.96278 0.88006 0.92952 0.94672 0.93133 0.90437 0.91645 0.89212 0.93022 0.88294 0.90920 0.90686 0.92339 0.85538 0.92418 0.88642 0.88555 0.89328 0.87611 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.39 -11.47 9.62 -148.98 -1.43 -12.90 16 3 C 0.02 0.65 4.51 71.98 0.32 0.97 16 4 C 0.18 5.24 0.86 3.60 0.00 5.24 16 5 C -0.19 -6.33 7.41 71.98 0.53 -5.80 16 6 C -0.16 -3.45 8.94 71.98 0.64 -2.81 16 7 N -0.60 -19.58 2.82 -802.98 -2.27 -21.84 16 8 C 0.06 1.53 9.87 127.77 1.26 2.79 16 9 C 0.58 24.42 6.62 86.73 0.57 25.00 16 10 O -0.59 -28.47 17.00 -3.99 -0.07 -28.54 16 11 C -0.26 -11.83 2.91 -19.94 -0.06 -11.88 16 12 C -0.05 -2.49 7.58 22.25 0.17 -2.32 16 13 C -0.19 -9.91 8.57 22.47 0.19 -9.72 16 14 C 0.10 5.27 5.56 -21.28 -0.12 5.15 16 15 C -0.49 -24.66 8.97 23.46 0.21 -24.45 16 16 H 0.09 4.17 7.99 -2.91 -0.02 4.14 16 17 C 0.05 2.26 4.86 85.35 0.41 2.68 16 18 N -0.80 -39.76 11.60 21.87 0.25 -39.51 16 19 Si 0.98 35.52 29.65 68.60 2.03 37.56 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 21 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 23 C -0.24 -11.28 9.73 22.47 0.22 -11.06 16 24 C -0.05 -2.13 6.70 22.25 0.15 -1.98 16 25 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.71 2.19 -3.03 -0.01 2.71 16 30 H 0.06 2.16 7.71 -2.39 -0.02 2.14 16 31 H 0.09 3.64 2.61 -2.38 -0.01 3.63 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.68 4.26 -2.38 -0.01 1.67 16 34 H 0.07 1.44 7.57 -2.39 -0.02 1.42 16 35 H 0.07 1.55 7.64 -2.39 -0.02 1.53 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.13 2.15 4.53 -2.39 -0.01 2.14 16 38 H 0.06 1.55 7.92 -2.39 -0.02 1.53 16 39 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.10 5.07 6.47 -2.91 -0.02 5.05 16 41 H 0.30 13.21 8.29 -92.71 -0.77 12.44 16 42 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.11 4.43 6.57 -2.91 -0.02 4.41 16 Total: -1.00 -62.49 334.85 5.31 -57.19 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 1.02 Total: 34.37 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 5.77 Total: -26.32 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -2.01 Total: -61.35 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.50 Total: -41.44 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.56 kcal Total: -62.49 5.31 -57.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294269205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.409 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds