Wall clock time and date at job start Tue Mar 31 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00023 * 2 1 4 4 C 1.52997 * 109.47004 * 269.99922 * 3 2 1 5 5 C 1.53004 * 109.47004 * 299.99966 * 4 3 2 6 6 C 1.52995 * 109.47154 * 59.99879 * 4 3 2 7 7 C 1.52994 * 109.47074 * 180.02562 * 4 3 2 8 8 O 1.42905 * 109.47309 * 179.97438 * 7 4 3 9 9 C 1.34778 * 120.00117 * 179.97438 * 2 1 3 10 10 O 1.21587 * 120.00134 * 175.20567 * 9 2 1 11 11 C 1.47643 * 119.99894 * 355.20981 * 9 2 1 12 12 C 1.40016 * 119.89444 * 334.74581 * 11 9 2 13 13 C 1.36319 * 120.10457 * 180.25716 * 12 11 9 14 14 C 1.40892 * 119.89103 * 359.44806 * 13 12 11 15 15 C 1.41105 * 120.10332 * 180.29914 * 14 13 12 16 16 H 1.08000 * 119.99677 * 154.51122 * 15 14 13 17 17 C 1.40229 * 119.99821 * 334.51032 * 15 14 13 18 18 N 1.30639 * 120.00457 * 343.26674 * 17 15 14 19 19 Si 1.86803 * 119.99714 * 163.27023 * 17 15 14 20 20 H 1.48500 * 109.47472 * 59.99617 * 19 17 15 21 21 H 1.48500 * 109.47083 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46832 * 299.99618 * 19 17 15 23 23 C 1.40894 * 119.79263 * 0.27985 * 14 13 12 24 24 C 1.36318 * 119.89088 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47064 * 275.84815 * 1 2 3 26 26 H 1.08999 * 109.47107 * 35.84942 * 1 2 3 27 27 H 1.09000 * 109.47136 * 155.85050 * 1 2 3 28 28 H 1.08996 * 109.47238 * 29.99929 * 3 2 1 29 29 H 1.08998 * 109.47226 * 149.99809 * 3 2 1 30 30 H 1.08998 * 109.47188 * 60.00073 * 5 4 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47064 * 300.00014 * 5 4 3 33 33 H 1.09003 * 109.47323 * 60.00001 * 6 4 3 34 34 H 1.09009 * 109.47303 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47204 * 300.00028 * 6 4 3 36 36 H 1.09002 * 109.47601 * 299.99968 * 7 4 3 37 37 H 1.09008 * 109.47194 * 60.00072 * 7 4 3 38 38 H 0.96696 * 114.00217 * 179.97438 * 8 7 4 39 39 H 1.08002 * 119.94781 * 359.97438 * 12 11 9 40 40 H 1.07996 * 120.05541 * 179.72464 * 13 12 11 41 41 H 0.96997 * 120.00580 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.05041 * 180.02562 * 23 14 13 43 43 H 1.07996 * 119.94268 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1637 7 6 3.2180 3.0350 -1.4425 8 8 3.4567 3.4473 -2.7898 9 6 2.1389 -1.1672 0.0005 10 8 3.3515 -1.1691 -0.0875 11 6 1.4045 -2.4435 0.1079 12 6 0.1458 -2.4751 0.7203 13 6 -0.5337 -3.6521 0.8264 14 6 0.0275 -4.8360 0.3082 15 6 -0.6747 -6.0556 0.4100 16 1 -0.4872 -6.8475 -0.3001 17 6 -1.6160 -6.2395 1.4330 18 7 -1.6182 -5.4441 2.4694 19 14 -2.8668 -7.6218 1.3139 20 1 -2.1589 -8.9250 1.2393 21 1 -3.7418 -7.6023 2.5136 22 1 -3.6938 -7.4372 0.0943 23 6 1.2919 -4.7982 -0.3122 24 6 1.9666 -3.6175 -0.4081 25 1 -0.3633 0.1047 1.0223 26 1 -0.3633 0.8330 -0.6019 27 1 -0.3633 -0.9377 -0.4204 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 2.7344 -0.2999 -2.1637 31 1 3.4607 0.9584 -3.1915 32 1 4.2318 0.5137 -1.6498 33 1 0.5265 2.6530 -1.6499 34 1 1.2973 2.2075 -3.1916 35 1 0.5707 0.9493 -2.1637 36 1 2.6294 3.7950 -0.9286 37 1 4.1705 2.9043 -0.9288 38 1 3.9387 4.2820 -2.8662 39 1 -0.2855 -1.5662 1.1133 40 1 -1.5026 -3.6762 1.3028 41 1 -2.2690 -5.5715 3.1772 42 1 1.7259 -5.7031 -0.7112 43 1 2.9356 -3.5875 -0.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296091470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:26 Heat of formation + Delta-G solvation = -59.168662 kcal Electronic energy + Delta-G solvation = -23685.819909 eV Core-core repulsion = 20310.098202 eV Total energy + Delta-G solvation = -3375.721706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92089 -38.01440 -36.98889 -35.52431 -34.08767 -33.45461 -30.24000 -29.49703 -27.77258 -26.98828 -26.21451 -26.09194 -24.62335 -21.51930 -20.95416 -19.32304 -18.48071 -17.53466 -17.43068 -16.32589 -15.98892 -15.40267 -15.21553 -15.07428 -14.42923 -13.96648 -13.51334 -13.39295 -13.08369 -12.92075 -12.84602 -12.65940 -12.52159 -12.27062 -11.89363 -11.67845 -11.39405 -11.34699 -11.25667 -11.19654 -10.97923 -10.80105 -10.68562 -10.51548 -10.42207 -10.03441 -10.00878 -9.46491 -9.33139 -8.84543 -8.17393 -7.63761 -7.50250 -6.99580 -4.57939 2.29228 2.94269 2.95332 2.99336 3.03431 3.48563 3.75709 3.84084 4.26942 4.53947 4.80296 4.94847 5.09400 5.27139 5.38619 5.45768 5.53230 5.54315 5.65740 5.74182 5.82381 5.98646 6.05327 6.11494 6.12205 6.20729 6.24297 6.32261 6.36773 6.51119 6.73256 6.79683 6.85316 6.96618 7.09978 7.15726 7.46483 7.52132 7.63668 7.82266 7.88268 8.07943 8.13189 8.42719 8.66200 8.78030 9.04965 9.92667 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036493 B = 0.003393 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.081650 B = 8251.279989 C = 8521.834139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.618 5.618 3 C 0.130 3.870 4 C -0.079 4.079 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.089 3.911 8 O -0.568 6.568 9 C 0.574 3.426 10 O -0.564 6.564 11 C -0.281 4.281 12 C -0.081 4.081 13 C -0.179 4.179 14 C 0.129 3.871 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.775 5.775 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.238 4.238 24 C -0.025 4.025 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.374 0.626 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 13.143 -3.570 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.351 5.351 3 C 0.006 3.994 4 C -0.081 4.081 5 C -0.181 4.181 6 C -0.195 4.195 7 C 0.011 3.989 8 O -0.372 6.372 9 C 0.370 3.630 10 O -0.445 6.445 11 C -0.285 4.285 12 C -0.099 4.099 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.475 4.475 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.399 5.399 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.257 4.257 24 C -0.045 4.045 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.220 0.780 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.861 12.612 -3.485 13.113 hybrid contribution -0.358 -0.024 0.359 0.507 sum 0.503 12.588 -3.126 12.980 Atomic orbital electron populations 1.22484 0.80218 1.04005 1.00813 1.47551 1.06505 1.05262 1.75767 1.21234 0.97753 0.85682 0.94689 1.21007 0.96181 0.94213 0.96681 1.21717 0.99721 0.97561 0.99122 1.21888 0.95721 1.01435 1.00448 1.22133 0.98279 0.95410 0.83111 1.86502 1.79739 1.43999 1.26958 1.18662 0.86758 0.83493 0.74131 1.90640 1.14393 1.87472 1.52011 1.18875 0.99240 0.92104 1.18285 1.21168 0.93504 0.97929 0.97332 1.21008 1.01187 0.91273 1.06381 1.17784 0.89538 0.92992 0.87152 1.19790 1.16946 1.00120 1.10607 0.89897 1.26069 0.97112 0.97423 0.93971 1.69729 1.30361 1.34424 1.05336 0.86278 0.80049 0.81051 0.78956 1.18729 1.20099 1.18517 1.20706 0.96833 0.96364 1.11806 1.20313 0.96964 0.91720 0.95455 0.93045 0.92183 0.88461 0.91326 0.90224 0.92384 0.93246 0.92412 0.93394 0.92258 0.91899 0.93967 0.93639 0.78002 0.87274 0.86253 0.90265 0.88518 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 7.78 59.84 0.47 1.43 16 2 N -0.62 -10.26 2.40 -182.77 -0.44 -10.70 16 3 C 0.13 1.82 4.61 -4.04 -0.02 1.80 16 4 C -0.08 -1.05 0.68 -154.51 -0.10 -1.16 16 5 C -0.12 -2.00 6.92 37.16 0.26 -1.74 16 6 C -0.14 -1.73 7.09 37.15 0.26 -1.47 16 7 C 0.09 0.95 5.91 37.15 0.22 1.17 16 8 O -0.57 -6.09 12.31 -35.23 -0.43 -6.53 16 9 C 0.57 11.98 6.04 -12.42 -0.07 11.90 16 10 O -0.56 -12.97 14.02 5.29 0.07 -12.90 16 11 C -0.28 -6.35 5.50 -104.73 -0.58 -6.93 16 12 C -0.08 -1.77 7.44 -39.61 -0.29 -2.06 16 13 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 14 C 0.13 3.27 5.57 -106.80 -0.59 2.67 16 15 C -0.45 -11.15 9.05 -37.75 -0.34 -11.49 16 16 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 18 N -0.78 -18.69 10.94 55.56 0.61 -18.08 16 19 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 23 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 24 C -0.03 -0.60 9.52 -39.61 -0.38 -0.97 16 25 H 0.05 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.06 0.71 5.81 -51.93 -0.30 0.41 16 27 H 0.10 1.57 5.11 -51.93 -0.27 1.30 16 28 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.08 1.21 7.49 -51.93 -0.39 0.83 16 30 H 0.06 1.08 6.07 -51.93 -0.32 0.76 16 31 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 33 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.06 0.77 7.68 -51.92 -0.40 0.37 16 35 H 0.06 0.85 5.89 -51.93 -0.31 0.55 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.37 2.20 9.12 45.56 0.42 2.62 16 39 H 0.11 2.06 4.45 -52.49 -0.23 1.83 16 40 H 0.12 2.94 6.17 -52.49 -0.32 2.61 16 41 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.10 2.20 7.84 -52.49 -0.41 1.78 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -29.08 335.00 -7.51 -36.59 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.35 Total: 10.25 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.99 Total: -16.01 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.17 Total: -28.78 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.36 Total: -19.42 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.08 -7.51 -36.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296091470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.579 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds