Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00023 * 2 1 4 4 C 1.52997 * 109.47004 * 269.99922 * 3 2 1 5 5 C 1.53004 * 109.47004 * 299.99966 * 4 3 2 6 6 C 1.52995 * 109.47154 * 59.99879 * 4 3 2 7 7 C 1.52994 * 109.47074 * 180.02562 * 4 3 2 8 8 O 1.42905 * 109.47309 * 179.97438 * 7 4 3 9 9 C 1.34778 * 120.00117 * 179.97438 * 2 1 3 10 10 O 1.21587 * 120.00134 * 175.20567 * 9 2 1 11 11 C 1.47643 * 119.99894 * 355.20981 * 9 2 1 12 12 C 1.40016 * 119.89444 * 334.74581 * 11 9 2 13 13 C 1.36319 * 120.10457 * 180.25716 * 12 11 9 14 14 C 1.40892 * 119.89103 * 359.44806 * 13 12 11 15 15 C 1.41105 * 120.10332 * 180.29914 * 14 13 12 16 16 H 1.08000 * 119.99677 * 154.51122 * 15 14 13 17 17 C 1.40229 * 119.99821 * 334.51032 * 15 14 13 18 18 N 1.30639 * 120.00457 * 343.26674 * 17 15 14 19 19 Si 1.86803 * 119.99714 * 163.27023 * 17 15 14 20 20 H 1.48500 * 109.47472 * 59.99617 * 19 17 15 21 21 H 1.48500 * 109.47083 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46832 * 299.99618 * 19 17 15 23 23 C 1.40894 * 119.79263 * 0.27985 * 14 13 12 24 24 C 1.36318 * 119.89088 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47064 * 275.84815 * 1 2 3 26 26 H 1.08999 * 109.47107 * 35.84942 * 1 2 3 27 27 H 1.09000 * 109.47136 * 155.85050 * 1 2 3 28 28 H 1.08996 * 109.47238 * 29.99929 * 3 2 1 29 29 H 1.08998 * 109.47226 * 149.99809 * 3 2 1 30 30 H 1.08998 * 109.47188 * 60.00073 * 5 4 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47064 * 300.00014 * 5 4 3 33 33 H 1.09003 * 109.47323 * 60.00001 * 6 4 3 34 34 H 1.09009 * 109.47303 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47204 * 300.00028 * 6 4 3 36 36 H 1.09002 * 109.47601 * 299.99968 * 7 4 3 37 37 H 1.09008 * 109.47194 * 60.00072 * 7 4 3 38 38 H 0.96696 * 114.00217 * 179.97438 * 8 7 4 39 39 H 1.08002 * 119.94781 * 359.97438 * 12 11 9 40 40 H 1.07996 * 120.05541 * 179.72464 * 13 12 11 41 41 H 0.96997 * 120.00580 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.05041 * 180.02562 * 23 14 13 43 43 H 1.07996 * 119.94268 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1637 7 6 3.2180 3.0350 -1.4425 8 8 3.4567 3.4473 -2.7898 9 6 2.1389 -1.1672 0.0005 10 8 3.3515 -1.1691 -0.0875 11 6 1.4045 -2.4435 0.1079 12 6 0.1458 -2.4751 0.7203 13 6 -0.5337 -3.6521 0.8264 14 6 0.0275 -4.8360 0.3082 15 6 -0.6747 -6.0556 0.4100 16 1 -0.4872 -6.8475 -0.3001 17 6 -1.6160 -6.2395 1.4330 18 7 -1.6182 -5.4441 2.4694 19 14 -2.8668 -7.6218 1.3139 20 1 -2.1589 -8.9250 1.2393 21 1 -3.7418 -7.6023 2.5136 22 1 -3.6938 -7.4372 0.0943 23 6 1.2919 -4.7982 -0.3122 24 6 1.9666 -3.6175 -0.4081 25 1 -0.3633 0.1047 1.0223 26 1 -0.3633 0.8330 -0.6019 27 1 -0.3633 -0.9377 -0.4204 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 2.7344 -0.2999 -2.1637 31 1 3.4607 0.9584 -3.1915 32 1 4.2318 0.5137 -1.6498 33 1 0.5265 2.6530 -1.6499 34 1 1.2973 2.2075 -3.1916 35 1 0.5707 0.9493 -2.1637 36 1 2.6294 3.7950 -0.9286 37 1 4.1705 2.9043 -0.9288 38 1 3.9387 4.2820 -2.8662 39 1 -0.2855 -1.5662 1.1133 40 1 -1.5026 -3.6762 1.3028 41 1 -2.2690 -5.5715 3.1772 42 1 1.7259 -5.7031 -0.7112 43 1 2.9356 -3.5875 -0.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296091470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -77.147097 kcal Electronic energy + Delta-G solvation = -23686.599512 eV Core-core repulsion = 20310.098202 eV Total energy + Delta-G solvation = -3376.501310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37531 -39.39056 -38.47166 -36.76476 -35.74926 -34.79887 -31.97008 -31.33836 -28.93983 -28.37420 -27.72282 -27.11231 -26.01918 -23.21459 -22.75475 -20.76415 -19.69116 -19.33145 -18.33412 -17.87434 -17.48732 -16.94836 -16.57159 -16.01556 -15.96290 -15.44542 -14.96777 -14.83490 -14.45982 -14.34025 -14.22725 -14.03900 -13.81474 -13.62457 -13.50709 -13.16998 -13.01147 -12.82037 -12.72144 -12.47221 -12.35297 -12.28557 -12.03826 -11.74679 -11.74168 -11.46540 -11.22104 -11.10301 -10.81802 -10.50666 -9.58262 -9.47147 -9.31257 -8.75729 -6.46281 0.51944 1.15305 1.39451 1.45248 1.52227 2.09359 2.17932 2.24253 2.76849 3.43667 3.68299 3.76407 3.91132 4.08624 4.14994 4.21403 4.43126 4.44854 4.50892 4.54655 4.59747 4.62225 4.78915 4.83055 4.86208 4.94513 4.96240 5.04499 5.06144 5.10681 5.18496 5.19719 5.32154 5.41424 5.47421 5.60674 5.71559 5.85286 5.98399 6.02614 6.25452 6.55829 6.57395 6.80244 6.91804 6.98130 7.45027 8.19578 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036493 B = 0.003393 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.081650 B = 8251.279989 C = 8521.834139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.608 5.608 3 C 0.127 3.873 4 C -0.079 4.079 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.094 3.906 8 O -0.587 6.587 9 C 0.571 3.429 10 O -0.593 6.593 11 C -0.288 4.288 12 C -0.068 4.068 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.480 4.480 16 H 0.082 0.918 17 C 0.039 3.961 18 N -0.803 5.803 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.257 1.257 23 C -0.254 4.254 24 C -0.038 4.038 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.395 0.605 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.296 0.704 42 H 0.100 0.900 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 15.350 -3.048 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.340 5.340 3 C 0.004 3.996 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.190 4.190 7 C 0.016 3.984 8 O -0.395 6.395 9 C 0.365 3.635 10 O -0.477 6.477 11 C -0.293 4.293 12 C -0.086 4.086 13 C -0.217 4.217 14 C 0.099 3.901 15 C -0.508 4.508 16 H 0.100 0.900 17 C -0.180 4.180 18 N -0.426 5.426 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.181 1.181 23 C -0.273 4.273 24 C -0.057 4.057 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.245 0.755 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.682 14.877 -2.968 15.186 hybrid contribution 0.205 -0.582 0.151 0.635 sum -0.477 14.295 -2.817 14.578 Atomic orbital electron populations 1.22607 0.78504 1.04376 1.02489 1.47527 1.07618 1.04979 1.73841 1.21475 0.97616 0.85012 0.95474 1.20996 0.96614 0.94716 0.95735 1.21596 0.98958 0.97281 0.99402 1.21832 0.95250 1.01483 1.00387 1.22040 0.98430 0.94489 0.83479 1.86443 1.80322 1.45730 1.26966 1.18434 0.86330 0.84282 0.74419 1.90622 1.15518 1.88033 1.53490 1.19210 0.99608 0.92953 1.17500 1.21454 0.92788 0.98440 0.95923 1.21043 1.01402 0.91844 1.07434 1.18126 0.90096 0.93987 0.87940 1.20046 1.18708 1.00289 1.11758 0.89995 1.26883 0.98241 0.99893 0.92934 1.69754 1.31103 1.35876 1.05896 0.85177 0.77313 0.77542 0.79316 1.18533 1.18765 1.18131 1.20828 0.97053 0.96884 1.12566 1.20452 0.97094 0.92255 0.95883 0.91072 0.88830 0.90573 0.87228 0.91685 0.95544 0.93305 0.94267 0.90628 0.92895 0.93314 0.90979 0.93599 0.75502 0.83975 0.86831 0.89287 0.88218 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.58 7.78 127.77 0.99 2.58 16 2 N -0.61 -19.13 2.40 -850.43 -2.04 -21.17 16 3 C 0.13 3.20 4.61 86.38 0.40 3.60 16 4 C -0.08 -1.93 0.68 -52.18 -0.04 -1.96 16 5 C -0.11 -3.71 6.92 71.98 0.50 -3.22 16 6 C -0.13 -2.93 7.09 71.98 0.51 -2.42 16 7 C 0.09 1.71 5.91 71.98 0.43 2.13 16 8 O -0.59 -11.00 12.31 -148.98 -1.83 -12.83 16 9 C 0.57 23.88 6.04 86.73 0.52 24.40 16 10 O -0.59 -27.85 14.02 -3.99 -0.06 -27.90 16 11 C -0.29 -13.26 5.50 -19.93 -0.11 -13.37 16 12 C -0.07 -2.97 7.44 22.25 0.17 -2.80 16 13 C -0.20 -9.79 8.63 22.47 0.19 -9.60 16 14 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 15 C -0.48 -24.68 9.05 23.46 0.21 -24.47 16 16 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 17 C 0.04 1.83 5.15 85.35 0.44 2.27 16 18 N -0.80 -38.86 10.94 21.87 0.24 -38.62 16 19 Si 0.99 35.25 29.59 68.60 2.03 37.28 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 23 C -0.25 -12.89 9.73 22.47 0.22 -12.67 16 24 C -0.04 -1.84 9.52 22.25 0.21 -1.63 16 25 H 0.07 1.60 7.13 -2.39 -0.02 1.58 16 26 H 0.09 1.82 5.81 -2.39 -0.01 1.81 16 27 H 0.08 2.33 5.11 -2.39 -0.01 2.32 16 28 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.06 1.87 7.49 -2.39 -0.02 1.85 16 30 H 0.03 0.99 6.07 -2.39 -0.01 0.98 16 31 H 0.05 1.53 7.68 -2.39 -0.02 1.51 16 32 H 0.04 1.37 7.64 -2.39 -0.02 1.35 16 33 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.05 1.25 7.68 -2.38 -0.02 1.23 16 35 H 0.05 1.21 5.89 -2.39 -0.01 1.19 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 38 H 0.40 3.49 9.12 -74.06 -0.68 2.81 16 39 H 0.14 5.14 4.45 -2.91 -0.01 5.12 16 40 H 0.11 5.69 6.17 -2.91 -0.02 5.67 16 41 H 0.30 12.76 8.29 -92.71 -0.77 12.00 16 42 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.10 4.61 7.84 -2.91 -0.02 4.59 16 Total: -1.00 -65.54 335.00 3.22 -62.32 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.35 Total: 32.84 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.53 Total: -31.92 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -1.80 Total: -59.79 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.89 Total: -40.74 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -65.54 3.22 -62.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296091470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.828 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds