Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46775 * 2 1 4 4 C 1.53005 * 109.46775 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99977 * 71.05342 * 5 4 3 7 7 C 1.53002 * 109.47202 * 264.01683 * 6 5 4 8 8 O 1.42900 * 109.47442 * 295.00209 * 7 6 5 9 9 C 1.34785 * 119.99932 * 251.05330 * 5 4 3 10 10 O 1.21547 * 119.99876 * 183.43152 * 9 5 4 11 11 C 1.47879 * 119.99926 * 3.43139 * 9 5 4 12 12 C 1.39922 * 120.02893 * 28.90412 * 11 9 5 13 13 C 1.38325 * 120.36074 * 179.74150 * 12 11 9 14 14 C 1.37748 * 120.41314 * 0.56235 * 13 12 11 15 15 C 1.40756 * 120.03915 * 359.69635 * 14 13 12 16 16 C 1.41438 * 120.17931 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99602 * 28.80515 * 16 15 14 18 18 C 1.39933 * 119.99913 * 208.80129 * 16 15 14 19 19 N 1.30830 * 120.00195 * 10.48910 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 190.49058 * 18 16 15 21 21 H 1.48498 * 109.47282 * 59.99458 * 20 18 16 22 22 H 1.48501 * 109.47142 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46899 * 299.99983 * 20 18 16 24 24 C 1.38994 * 120.02542 * 209.18377 * 11 9 5 25 25 H 1.09000 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47099 * 299.99866 * 1 2 3 27 27 H 1.09001 * 109.47218 * 59.99394 * 1 2 3 28 28 H 1.09001 * 109.46596 * 240.00001 * 2 1 3 29 29 H 1.09002 * 109.47071 * 120.00071 * 2 1 3 30 30 H 1.09001 * 109.47558 * 60.00590 * 3 2 1 31 31 H 1.09002 * 109.47379 * 299.99883 * 3 2 1 32 32 H 1.09002 * 109.47099 * 60.00134 * 4 3 2 33 33 H 1.09001 * 109.47218 * 300.00606 * 4 3 2 34 34 H 1.09002 * 109.47362 * 144.02128 * 6 5 4 35 35 H 1.08993 * 109.47534 * 24.02103 * 6 5 4 36 36 H 1.09001 * 109.46512 * 55.00282 * 7 6 5 37 37 H 1.09002 * 109.46973 * 174.99954 * 7 6 5 38 38 H 0.96690 * 114.00175 * 180.02562 * 8 7 6 39 39 H 1.08004 * 119.81591 * 359.97438 * 12 11 9 40 40 H 1.08006 * 119.79663 * 180.28023 * 13 12 11 41 41 H 1.08003 * 119.98654 * 179.71917 * 14 13 12 42 42 H 0.96993 * 120.00063 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.20359 * 359.94934 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 3.9136 3.6513 1.2014 7 6 2.6505 4.5065 1.0820 8 8 2.8008 5.4299 0.0019 9 6 4.6408 3.3331 -1.1024 10 8 5.1018 4.4575 -1.0823 11 6 4.7188 2.5239 -2.3377 12 6 3.7425 1.5577 -2.6047 13 6 3.8059 0.8007 -3.7606 14 6 4.8366 0.9807 -4.6565 15 6 5.8309 1.9441 -4.4024 16 6 6.8902 2.1319 -5.3205 17 1 6.7377 1.9275 -6.3700 18 6 8.1357 2.5826 -4.8691 19 7 8.3869 2.6345 -3.5862 20 14 9.4396 3.1101 -6.0982 21 1 8.9236 4.2389 -6.9136 22 1 10.6601 3.5418 -5.3705 23 1 9.7721 1.9685 -6.9878 24 6 5.7652 2.7184 -3.2316 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 4.7835 4.3003 1.3024 35 1 3.8359 3.0089 2.0785 36 1 1.7921 3.8620 0.8923 37 1 2.4945 5.0556 2.0105 38 1 2.0361 6.0062 -0.1322 39 1 2.9331 1.4049 -1.9062 40 1 3.0449 0.0605 -3.9598 41 1 4.8818 0.3827 -5.5547 42 1 9.2501 2.9473 -3.2733 43 1 6.5230 3.4604 -3.0278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298604364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -57.423862 kcal Electronic energy + Delta-G solvation = -23986.725646 eV Core-core repulsion = 20611.079600 eV Total energy + Delta-G solvation = -3375.646046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71792 -37.22452 -36.44909 -36.04876 -33.80231 -33.61546 -30.81795 -29.42328 -29.18793 -28.13682 -25.32272 -23.64466 -23.21382 -21.14451 -21.07258 -20.91820 -18.71520 -17.62187 -17.16934 -16.24595 -15.78299 -15.44856 -14.99307 -14.80783 -14.46260 -14.05962 -13.64906 -13.55516 -13.25973 -13.04913 -12.65272 -12.54934 -12.44480 -12.25112 -11.84592 -11.64200 -11.39371 -11.19592 -11.10485 -11.09311 -11.01731 -11.00383 -10.62020 -10.37446 -10.24299 -9.92057 -9.75714 -9.55683 -9.18488 -8.75590 -8.15287 -7.51480 -7.36930 -6.69661 -4.37878 2.36992 2.87194 3.10861 3.13062 3.18838 3.55407 3.92820 3.97567 4.45509 4.67700 4.91643 4.95145 5.09877 5.25790 5.29061 5.33799 5.41068 5.53637 5.60926 5.69204 5.71933 5.80284 5.82332 5.86824 6.02433 6.10880 6.16910 6.20804 6.28761 6.37040 6.50612 6.74709 7.03962 7.05782 7.13850 7.28374 7.45852 7.74452 7.84934 7.86694 7.97576 8.13021 8.24679 8.56969 8.87480 8.89652 9.12396 10.24621 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.004890 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.413164 B = 5724.400524 C = 6833.468874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.139 4.139 4 C 0.079 3.921 5 N -0.614 5.614 6 C 0.118 3.882 7 C 0.057 3.943 8 O -0.546 6.546 9 C 0.570 3.430 10 O -0.526 6.526 11 C -0.124 4.124 12 C -0.235 4.235 13 C -0.103 4.103 14 C -0.209 4.209 15 C 0.100 3.900 16 C -0.462 4.462 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.798 5.798 20 Si 0.913 3.087 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.091 4.091 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.367 0.633 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.282 0.718 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -2.630 9.568 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.177 4.177 4 C -0.044 4.044 5 N -0.348 5.348 6 C -0.005 4.005 7 C -0.022 4.022 8 O -0.349 6.349 9 C 0.361 3.639 10 O -0.402 6.402 11 C -0.127 4.127 12 C -0.254 4.254 13 C -0.122 4.122 14 C -0.229 4.229 15 C 0.098 3.902 16 C -0.492 4.492 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.424 5.424 20 Si 0.738 3.262 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.212 0.788 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.168 -2.247 9.705 14.234 hybrid contribution -0.066 0.381 -0.246 0.459 sum -10.234 -1.866 9.459 14.060 Atomic orbital electron populations 1.21758 0.96043 1.01362 1.01626 1.21485 0.95665 0.96639 1.02438 1.22148 0.96340 0.96982 1.02250 1.22465 0.93407 0.83395 1.05123 1.47693 1.61265 1.12944 1.12873 1.21331 0.98022 0.93480 0.87689 1.22729 0.98295 0.91700 0.89499 1.86843 1.43653 1.51749 1.52673 1.18797 0.75969 0.86104 0.83048 1.90693 1.46211 1.19459 1.83821 1.19531 0.98967 0.99097 0.95116 1.21160 1.01999 1.02149 1.00130 1.20472 0.97689 0.99172 0.94836 1.21157 0.99246 1.01680 1.00809 1.17594 0.91592 0.88989 0.92055 1.19535 0.94668 1.39480 0.95509 0.90318 1.25912 0.99819 0.93025 0.95755 1.69745 1.23700 1.34296 1.14617 0.86286 0.79234 0.79927 0.80776 1.18828 1.20309 1.19067 1.21623 0.96314 0.99059 0.94092 0.92894 0.93141 0.92683 0.91277 0.92067 0.92193 0.90983 0.85571 0.92357 0.89828 0.89842 0.93684 0.93858 0.78838 0.86265 0.89021 0.88747 0.90662 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 3 C -0.14 -1.68 3.87 -26.73 -0.10 -1.78 16 4 C 0.08 1.16 4.85 -4.04 -0.02 1.14 16 5 N -0.61 -10.90 2.56 -174.79 -0.45 -11.35 16 6 C 0.12 1.75 5.66 -4.04 -0.02 1.72 16 7 C 0.06 0.74 7.28 37.16 0.27 1.01 16 8 O -0.55 -8.88 11.91 -51.30 -0.61 -9.49 16 9 C 0.57 13.14 6.96 -12.31 -0.09 13.06 16 10 O -0.53 -13.88 15.15 -10.74 -0.16 -14.04 16 11 C -0.12 -3.01 5.47 -105.04 -0.57 -3.58 16 12 C -0.24 -4.97 7.40 -38.92 -0.29 -5.26 16 13 C -0.10 -2.20 10.01 -39.73 -0.40 -2.60 16 14 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 15 C 0.10 2.69 5.55 -106.87 -0.59 2.10 16 16 C -0.46 -12.39 9.06 -37.73 -0.34 -12.73 16 17 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 18 C 0.07 1.86 5.26 -17.34 -0.09 1.77 16 19 N -0.80 -21.47 10.83 55.55 0.60 -20.87 16 20 Si 0.91 19.26 29.57 -169.99 -5.03 14.24 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.09 -2.48 8.20 -38.44 -0.32 -2.79 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 31 H 0.07 1.00 6.88 -51.93 -0.36 0.65 16 32 H 0.13 2.15 4.07 -51.93 -0.21 1.94 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.42 7.56 -51.93 -0.39 1.03 16 35 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.05 0.53 5.97 -51.93 -0.31 0.22 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.37 4.10 9.12 45.56 0.42 4.52 16 39 H 0.12 2.13 3.02 -52.48 -0.16 1.97 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 42 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 43 H 0.13 3.90 6.06 -52.49 -0.32 3.58 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -32.18 342.95 -8.65 -40.82 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.44 Total: 11.30 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.73 Total: -15.77 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.15 Total: -32.22 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.77 Total: -23.53 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.18 -8.65 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298604364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.601 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds