Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46775 * 2 1 4 4 C 1.53005 * 109.46775 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99977 * 71.05342 * 5 4 3 7 7 C 1.53002 * 109.47202 * 264.01683 * 6 5 4 8 8 O 1.42900 * 109.47442 * 295.00209 * 7 6 5 9 9 C 1.34785 * 119.99932 * 251.05330 * 5 4 3 10 10 O 1.21547 * 119.99876 * 183.43152 * 9 5 4 11 11 C 1.47879 * 119.99926 * 3.43139 * 9 5 4 12 12 C 1.39922 * 120.02893 * 28.90412 * 11 9 5 13 13 C 1.38325 * 120.36074 * 179.74150 * 12 11 9 14 14 C 1.37748 * 120.41314 * 0.56235 * 13 12 11 15 15 C 1.40756 * 120.03915 * 359.69635 * 14 13 12 16 16 C 1.41438 * 120.17931 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99602 * 28.80515 * 16 15 14 18 18 C 1.39933 * 119.99913 * 208.80129 * 16 15 14 19 19 N 1.30830 * 120.00195 * 10.48910 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 190.49058 * 18 16 15 21 21 H 1.48498 * 109.47282 * 59.99458 * 20 18 16 22 22 H 1.48501 * 109.47142 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46899 * 299.99983 * 20 18 16 24 24 C 1.38994 * 120.02542 * 209.18377 * 11 9 5 25 25 H 1.09000 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47099 * 299.99866 * 1 2 3 27 27 H 1.09001 * 109.47218 * 59.99394 * 1 2 3 28 28 H 1.09001 * 109.46596 * 240.00001 * 2 1 3 29 29 H 1.09002 * 109.47071 * 120.00071 * 2 1 3 30 30 H 1.09001 * 109.47558 * 60.00590 * 3 2 1 31 31 H 1.09002 * 109.47379 * 299.99883 * 3 2 1 32 32 H 1.09002 * 109.47099 * 60.00134 * 4 3 2 33 33 H 1.09001 * 109.47218 * 300.00606 * 4 3 2 34 34 H 1.09002 * 109.47362 * 144.02128 * 6 5 4 35 35 H 1.08993 * 109.47534 * 24.02103 * 6 5 4 36 36 H 1.09001 * 109.46512 * 55.00282 * 7 6 5 37 37 H 1.09002 * 109.46973 * 174.99954 * 7 6 5 38 38 H 0.96690 * 114.00175 * 180.02562 * 8 7 6 39 39 H 1.08004 * 119.81591 * 359.97438 * 12 11 9 40 40 H 1.08006 * 119.79663 * 180.28023 * 13 12 11 41 41 H 1.08003 * 119.98654 * 179.71917 * 14 13 12 42 42 H 0.96993 * 120.00063 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.20359 * 359.94934 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 3.9136 3.6513 1.2014 7 6 2.6505 4.5065 1.0820 8 8 2.8008 5.4299 0.0019 9 6 4.6408 3.3331 -1.1024 10 8 5.1018 4.4575 -1.0823 11 6 4.7188 2.5239 -2.3377 12 6 3.7425 1.5577 -2.6047 13 6 3.8059 0.8007 -3.7606 14 6 4.8366 0.9807 -4.6565 15 6 5.8309 1.9441 -4.4024 16 6 6.8902 2.1319 -5.3205 17 1 6.7377 1.9275 -6.3700 18 6 8.1357 2.5826 -4.8691 19 7 8.3869 2.6345 -3.5862 20 14 9.4396 3.1101 -6.0982 21 1 8.9236 4.2389 -6.9136 22 1 10.6601 3.5418 -5.3705 23 1 9.7721 1.9685 -6.9878 24 6 5.7652 2.7184 -3.2316 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 4.7835 4.3003 1.3024 35 1 3.8359 3.0089 2.0785 36 1 1.7921 3.8620 0.8923 37 1 2.4945 5.0556 2.0105 38 1 2.0361 6.0062 -0.1322 39 1 2.9331 1.4049 -1.9062 40 1 3.0449 0.0605 -3.9598 41 1 4.8818 0.3827 -5.5547 42 1 9.2501 2.9473 -3.2733 43 1 6.5230 3.4604 -3.0278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298604364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -78.118979 kcal Electronic energy + Delta-G solvation = -23987.623054 eV Core-core repulsion = 20611.079600 eV Total energy + Delta-G solvation = -3376.543454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31245 -38.92930 -37.93795 -37.24345 -35.49442 -34.93478 -32.44272 -31.28807 -30.52518 -29.33624 -27.23329 -25.04236 -24.34192 -22.85370 -22.64999 -21.91525 -20.35074 -19.27584 -18.45177 -17.72720 -17.48836 -16.93965 -16.65223 -16.22928 -15.77033 -15.29876 -15.11621 -15.01663 -14.54089 -14.47896 -14.20494 -14.11820 -13.91829 -13.39459 -13.28045 -13.07088 -12.84861 -12.81846 -12.57099 -12.42726 -12.13954 -12.10508 -11.99281 -11.84469 -11.74378 -11.42713 -11.33418 -11.06566 -10.84671 -10.49798 -9.64754 -9.33820 -9.27059 -8.60356 -6.39159 0.49974 1.02162 1.35578 1.47905 1.49094 2.12804 2.15703 2.20952 2.79670 3.46171 3.67262 3.81967 3.97344 4.05551 4.25452 4.30627 4.34195 4.40731 4.48663 4.52085 4.59177 4.61100 4.77201 4.83701 4.85118 4.92660 5.00765 5.06572 5.09826 5.18872 5.22985 5.32965 5.37436 5.43239 5.53981 5.56919 5.75981 5.88285 5.97294 6.06938 6.30117 6.46776 6.66020 6.90200 6.96458 6.98548 7.41567 8.35595 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.004890 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.413164 B = 5724.400524 C = 6833.468874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.129 4.129 4 C 0.072 3.928 5 N -0.602 5.602 6 C 0.108 3.892 7 C 0.057 3.943 8 O -0.587 6.587 9 C 0.561 3.439 10 O -0.575 6.575 11 C -0.137 4.137 12 C -0.210 4.210 13 C -0.100 4.100 14 C -0.213 4.213 15 C 0.067 3.933 16 C -0.500 4.500 17 H 0.082 0.918 18 C 0.026 3.974 19 N -0.838 5.838 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.284 0.716 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 -4.380 10.959 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.168 4.168 4 C -0.049 4.049 5 N -0.334 5.334 6 C -0.014 4.014 7 C -0.021 4.021 8 O -0.394 6.394 9 C 0.351 3.649 10 O -0.455 6.455 11 C -0.140 4.140 12 C -0.229 4.229 13 C -0.118 4.118 14 C -0.233 4.233 15 C 0.065 3.935 16 C -0.530 4.530 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.465 5.465 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.176 1.176 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.793 -4.039 11.131 17.432 hybrid contribution 0.533 0.838 -0.513 1.118 sum -12.260 -3.201 10.618 16.532 Atomic orbital electron populations 1.21746 0.94990 1.02110 1.01841 1.21482 0.96519 0.95081 1.02915 1.22057 0.93703 0.98529 1.02463 1.22641 0.95495 0.81428 1.05372 1.47709 1.59332 1.14246 1.12123 1.21717 0.98067 0.93965 0.87672 1.22843 0.97466 0.91664 0.90164 1.86809 1.45506 1.52904 1.54172 1.18762 0.76431 0.85474 0.84206 1.90656 1.48593 1.21420 1.84781 1.19857 0.98794 0.99924 0.95452 1.21648 1.01302 0.99635 1.00279 1.20958 0.97643 0.99504 0.93718 1.21456 0.99067 1.00906 1.01857 1.17931 0.92962 0.90167 0.92408 1.19831 0.95723 1.41694 0.95798 0.89967 1.26827 1.01843 0.92464 0.97513 1.69869 1.24278 1.35726 1.16627 0.85203 0.76257 0.79715 0.78231 1.18670 1.19681 1.17563 1.21395 0.97427 0.99927 0.96182 0.91951 0.92134 0.93324 0.92034 0.90496 0.89994 0.92754 0.88109 0.89323 0.92914 0.85259 0.91813 0.90481 0.76767 0.82478 0.84355 0.87323 0.90597 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.96 5.92 30.60 0.18 -1.78 16 3 C -0.13 -2.59 3.87 30.60 0.12 -2.47 16 4 C 0.07 1.91 4.85 86.38 0.42 2.33 16 5 N -0.60 -20.68 2.56 -825.18 -2.11 -22.79 16 6 C 0.11 2.97 5.66 86.38 0.49 3.46 16 7 C 0.06 1.32 7.28 71.98 0.52 1.84 16 8 O -0.59 -18.77 11.91 -133.62 -1.59 -20.36 16 9 C 0.56 26.62 6.96 86.80 0.60 27.23 16 10 O -0.57 -32.07 15.15 11.50 0.17 -31.90 16 11 C -0.14 -6.86 5.47 -20.14 -0.11 -6.97 16 12 C -0.21 -8.62 7.40 22.70 0.17 -8.45 16 13 C -0.10 -4.08 10.01 22.17 0.22 -3.85 16 14 C -0.21 -10.22 9.78 22.77 0.22 -10.00 16 15 C 0.07 3.79 5.55 -21.32 -0.12 3.67 16 16 C -0.50 -28.18 9.06 23.47 0.21 -27.97 16 17 H 0.08 4.36 7.87 -2.91 -0.02 4.33 16 18 C 0.03 1.43 5.26 85.25 0.45 1.88 16 19 N -0.84 -48.15 10.83 21.82 0.24 -47.91 16 20 Si 0.99 41.05 29.57 68.60 2.03 43.08 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.13 -7.49 8.20 23.01 0.19 -7.30 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.33 6.44 -2.39 -0.02 1.32 16 31 H 0.05 1.31 6.88 -2.39 -0.02 1.30 16 32 H 0.10 3.21 4.07 -2.39 -0.01 3.20 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 35 H 0.13 2.32 8.03 -2.39 -0.02 2.30 16 36 H 0.06 1.23 5.97 -2.39 -0.01 1.22 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.38 8.30 9.12 -74.06 -0.68 7.62 16 39 H 0.16 5.19 3.02 -2.91 -0.01 5.18 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.28 15.06 8.30 -92.71 -0.77 14.29 16 43 H 0.09 6.02 6.06 -2.91 -0.02 6.00 16 Total: -1.00 -77.29 342.95 3.37 -73.92 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.35 Total: 35.70 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.28 Total: -29.75 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.87 Total: -70.70 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -1.42 Total: -52.26 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -77.29 3.37 -73.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298604364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.199 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds