Wall clock time and date at job start Tue Mar 31 2020 07:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 H 1.09004 * 109.46918 * 304.99806 * 3 2 1 5 5 C 1.52997 * 109.47417 * 64.99987 * 3 2 1 6 6 C 1.50699 * 109.46962 * 185.00406 * 3 2 1 7 7 C 1.38162 * 120.02527 * 299.97273 * 6 3 2 8 8 C 1.38251 * 120.05707 * 180.02562 * 7 6 3 9 9 C 1.38286 * 120.10766 * 0.02562 * 8 7 6 10 10 C 1.38119 * 120.06026 * 359.97438 * 9 8 7 11 11 C 1.38711 * 120.03185 * 120.00121 * 6 3 2 12 12 O 1.35901 * 120.05524 * 359.97438 * 11 6 3 13 13 C 1.42895 * 117.00364 * 179.97438 * 12 11 6 14 14 C 1.50704 * 109.47337 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99817 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99620 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00745 * 359.97438 * 16 14 13 18 18 C 1.37099 * 119.99877 * 180.02562 * 16 14 13 19 19 H 1.08006 * 119.99680 * 24.38966 * 18 16 14 20 20 C 1.38945 * 120.00457 * 204.39401 * 18 16 14 21 21 N 1.31416 * 119.99772 * 12.65652 * 20 18 16 22 22 Si 1.86798 * 120.00599 * 192.65414 * 20 18 16 23 23 H 1.48507 * 109.46668 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47551 * 119.99831 * 22 20 18 25 25 H 1.48499 * 109.47537 * 240.00321 * 22 20 18 26 26 H 1.09001 * 109.46929 * 299.99871 * 1 2 3 27 27 H 1.08998 * 109.46781 * 60.00150 * 1 2 3 28 28 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47100 * 240.00306 * 2 1 3 30 30 H 1.08998 * 109.47262 * 119.99249 * 2 1 3 31 31 H 1.08994 * 109.47325 * 59.99965 * 5 3 2 32 32 H 1.09004 * 109.47107 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.47109 * 299.99901 * 5 3 2 34 34 H 1.08001 * 119.97596 * 0.02567 * 7 6 3 35 35 H 1.07996 * 119.94467 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.96828 * 180.27811 * 9 8 7 37 37 H 1.07999 * 120.03517 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47452 * 300.00985 * 13 12 11 39 39 H 1.09003 * 109.46630 * 60.00374 * 13 12 11 40 40 H 1.09007 * 109.46570 * 85.86016 * 17 16 14 41 41 H 1.08991 * 109.47495 * 205.86663 * 17 16 14 42 42 H 1.09006 * 109.46917 * 325.87201 * 17 16 14 43 43 H 0.97003 * 119.99829 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.3154 0.8177 0.8341 8 6 5.6933 0.8195 0.7214 9 6 6.3008 1.4485 -0.3498 10 6 5.5321 2.0764 -1.3103 11 6 4.1489 2.0757 -1.1996 12 8 3.3903 2.6928 -2.1433 13 6 4.0831 3.3228 -3.2226 14 6 3.0855 3.9498 -4.1621 15 8 1.8980 3.8658 -3.9300 16 7 3.5129 4.6038 -5.2603 17 6 4.9473 4.7058 -5.5405 18 6 2.6054 5.1747 -6.1148 19 1 1.6269 5.4557 -5.7542 20 6 2.9444 5.3917 -7.4447 21 7 4.0232 4.8342 -7.9471 22 14 1.8667 6.4756 -8.5185 23 1 0.7206 6.9799 -7.7201 24 1 2.6634 7.6240 -9.0200 25 1 1.3596 5.6850 -9.6688 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0699 1.5877 2.1491 32 1 1.9982 3.1545 1.3070 33 1 0.5489 2.1253 1.3969 34 1 3.8433 0.3261 1.6719 35 1 6.2961 0.3287 1.4711 36 1 7.3772 1.4446 -0.4381 37 1 6.0070 2.5672 -2.1469 38 1 4.7452 4.0939 -2.8286 39 1 4.6713 2.5790 -3.7601 40 1 5.2750 3.8199 -6.0846 41 1 5.1375 5.5936 -6.1433 42 1 5.4965 4.7793 -4.6018 43 1 4.2601 4.9860 -8.8754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299524793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:58 Heat of formation + Delta-G solvation = -53.931853 kcal Electronic energy + Delta-G solvation = -23338.762023 eV Core-core repulsion = 19963.267402 eV Total energy + Delta-G solvation = -3375.494621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25948 -38.56222 -37.11153 -35.91609 -34.66673 -31.76441 -31.10516 -30.00173 -28.79585 -27.83304 -26.14578 -24.73089 -24.30206 -22.57895 -21.75628 -19.78269 -19.10011 -17.92957 -16.92600 -16.10108 -15.88184 -15.80264 -15.42786 -14.73223 -14.51359 -14.34499 -14.03069 -13.98318 -13.76866 -13.38953 -12.91887 -12.78160 -12.31885 -12.06310 -12.02325 -11.78041 -11.71770 -11.56743 -11.45936 -11.33795 -11.23316 -10.93950 -10.74053 -10.66291 -10.40956 -10.35092 -10.32380 -10.26199 -9.08056 -8.75325 -8.45001 -7.94332 -7.74503 -6.38877 -3.95570 1.40035 1.56464 3.12102 3.21243 3.26364 3.37744 3.76200 3.85046 4.14467 4.70652 4.78667 4.94082 5.03880 5.06827 5.13048 5.15995 5.21326 5.37712 5.45444 5.55383 5.58692 5.59282 5.66014 5.70412 5.71224 5.76849 5.96671 6.04096 6.09351 6.10646 6.20307 6.24326 6.35922 6.42366 6.50890 6.58246 6.73628 6.74261 6.89940 7.09107 7.51686 7.63661 8.07332 8.41752 9.11310 9.31550 9.87338 10.66364 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.003814 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.622601 B = 7338.956272 C = 8401.272182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.052 4.052 4 H 0.094 0.906 5 C -0.140 4.140 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.166 4.166 9 C -0.085 4.085 10 C -0.212 4.212 11 C 0.139 3.861 12 O -0.283 6.283 13 C 0.052 3.948 14 C 0.448 3.552 15 O -0.567 6.567 16 N -0.442 5.442 17 C 0.108 3.892 18 C -0.305 4.305 19 H 0.100 0.900 20 C 0.031 3.969 21 N -0.882 5.882 22 Si 0.928 3.072 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.281 1.281 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -7.038 14.888 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.071 4.071 4 H 0.112 0.888 5 C -0.198 4.198 6 C -0.109 4.109 7 C -0.098 4.098 8 C -0.184 4.184 9 C -0.103 4.103 10 C -0.230 4.230 11 C 0.093 3.907 12 O -0.194 6.194 13 C -0.027 4.027 14 C 0.235 3.765 15 O -0.449 6.449 16 N -0.163 5.163 17 C -0.036 4.036 18 C -0.433 4.433 19 H 0.118 0.882 20 C -0.172 4.172 21 N -0.521 5.521 22 Si 0.755 3.245 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.207 1.207 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.676 -7.040 14.778 16.777 hybrid contribution 0.236 0.496 -0.870 1.029 sum 3.911 -6.544 13.908 15.861 Atomic orbital electron populations 1.21832 0.95821 1.01260 1.02226 1.21543 0.95794 0.95850 1.01687 1.20068 0.90432 0.96778 0.99800 0.88760 1.21858 1.01145 1.00471 0.96283 1.19222 0.96077 1.01360 0.94204 1.20770 0.93353 0.97935 0.97722 1.20949 0.94651 1.03336 0.99485 1.20878 0.99414 0.96324 0.93692 1.21311 0.92779 1.06464 1.02476 1.19023 0.89707 0.92651 0.89369 1.86181 1.34107 1.66503 1.32643 1.22608 0.95524 0.96945 0.87611 1.19526 0.88782 0.83334 0.84855 1.90556 1.16876 1.62073 1.75436 1.43471 1.06250 1.46161 1.20407 1.21553 0.80997 1.03943 0.97129 1.19706 0.97960 1.35953 0.89660 0.88204 1.25367 0.97347 0.97620 0.96869 1.69996 1.25724 1.41406 1.14957 0.85830 0.79837 0.79356 0.79515 1.19119 1.20595 1.20652 0.92622 0.92261 0.93080 0.91996 0.92357 0.93014 0.92705 0.92267 0.85841 0.86364 0.86143 0.85398 0.90725 0.90391 0.92729 0.90263 0.95755 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 37.16 0.36 -1.36 16 2 C -0.11 -1.34 5.14 -26.73 -0.14 -1.48 16 3 C -0.05 -0.73 2.52 -91.77 -0.23 -0.96 16 4 H 0.09 1.63 6.99 -51.93 -0.36 1.26 16 5 C -0.14 -1.66 8.76 37.16 0.33 -1.33 16 6 C -0.11 -1.57 4.79 -104.48 -0.50 -2.07 16 7 C -0.08 -0.96 8.76 -39.60 -0.35 -1.31 16 8 C -0.17 -1.87 10.04 -39.56 -0.40 -2.27 16 9 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 10 C -0.21 -2.99 9.04 -39.43 -0.36 -3.35 16 11 C 0.14 2.29 6.66 -39.22 -0.26 2.02 16 12 O -0.28 -5.58 8.44 -39.34 -0.33 -5.92 16 13 C 0.05 1.00 3.83 36.01 0.14 1.14 16 14 C 0.45 11.20 7.70 -10.99 -0.08 11.11 16 15 O -0.57 -16.35 16.21 -14.36 -0.23 -16.58 16 16 N -0.44 -11.30 3.01 -122.19 -0.37 -11.67 16 17 C 0.11 2.32 8.44 59.85 0.51 2.83 16 18 C -0.31 -8.48 9.24 -14.93 -0.14 -8.62 16 19 H 0.10 2.91 7.45 -52.48 -0.39 2.52 16 20 C 0.03 0.82 5.04 -17.47 -0.09 0.73 16 21 N -0.88 -23.18 10.84 55.50 0.60 -22.58 16 22 Si 0.93 20.55 29.57 -169.99 -5.03 15.53 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.60 7.57 -51.93 -0.39 0.21 16 31 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 34 H 0.12 1.21 7.16 -52.49 -0.38 0.83 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.66 6.30 -52.49 -0.33 1.33 16 38 H 0.07 1.25 6.93 -51.93 -0.36 0.89 16 39 H 0.08 1.36 7.63 -51.93 -0.40 0.97 16 40 H 0.05 1.20 7.83 -51.92 -0.41 0.79 16 41 H 0.08 1.81 6.80 -51.93 -0.35 1.45 16 42 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 43 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -31.40 347.86 -8.18 -39.58 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.45 Total: 2.71 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.61 Total: -6.32 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.23 Total: -34.25 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.56 Total: -22.49 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.40 -8.18 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.356 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds