Wall clock time and date at job start Tue Mar 31 2020 07:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 H 1.09004 * 109.46918 * 304.99806 * 3 2 1 5 5 C 1.52997 * 109.47417 * 64.99987 * 3 2 1 6 6 C 1.50699 * 109.46962 * 185.00406 * 3 2 1 7 7 C 1.38162 * 120.02527 * 299.97273 * 6 3 2 8 8 C 1.38251 * 120.05707 * 180.02562 * 7 6 3 9 9 C 1.38286 * 120.10766 * 0.02562 * 8 7 6 10 10 C 1.38119 * 120.06026 * 359.97438 * 9 8 7 11 11 C 1.38711 * 120.03185 * 120.00121 * 6 3 2 12 12 O 1.35901 * 120.05524 * 359.97438 * 11 6 3 13 13 C 1.42895 * 117.00364 * 179.97438 * 12 11 6 14 14 C 1.50704 * 109.47337 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99817 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99620 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00745 * 359.97438 * 16 14 13 18 18 C 1.37099 * 119.99877 * 180.02562 * 16 14 13 19 19 H 1.08006 * 119.99680 * 24.38966 * 18 16 14 20 20 C 1.38945 * 120.00457 * 204.39401 * 18 16 14 21 21 N 1.31416 * 119.99772 * 12.65652 * 20 18 16 22 22 Si 1.86798 * 120.00599 * 192.65414 * 20 18 16 23 23 H 1.48507 * 109.46668 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47551 * 119.99831 * 22 20 18 25 25 H 1.48499 * 109.47537 * 240.00321 * 22 20 18 26 26 H 1.09001 * 109.46929 * 299.99871 * 1 2 3 27 27 H 1.08998 * 109.46781 * 60.00150 * 1 2 3 28 28 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47100 * 240.00306 * 2 1 3 30 30 H 1.08998 * 109.47262 * 119.99249 * 2 1 3 31 31 H 1.08994 * 109.47325 * 59.99965 * 5 3 2 32 32 H 1.09004 * 109.47107 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.47109 * 299.99901 * 5 3 2 34 34 H 1.08001 * 119.97596 * 0.02567 * 7 6 3 35 35 H 1.07996 * 119.94467 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.96828 * 180.27811 * 9 8 7 37 37 H 1.07999 * 120.03517 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47452 * 300.00985 * 13 12 11 39 39 H 1.09003 * 109.46630 * 60.00374 * 13 12 11 40 40 H 1.09007 * 109.46570 * 85.86016 * 17 16 14 41 41 H 1.08991 * 109.47495 * 205.86663 * 17 16 14 42 42 H 1.09006 * 109.46917 * 325.87201 * 17 16 14 43 43 H 0.97003 * 119.99829 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.3154 0.8177 0.8341 8 6 5.6933 0.8195 0.7214 9 6 6.3008 1.4485 -0.3498 10 6 5.5321 2.0764 -1.3103 11 6 4.1489 2.0757 -1.1996 12 8 3.3903 2.6928 -2.1433 13 6 4.0831 3.3228 -3.2226 14 6 3.0855 3.9498 -4.1621 15 8 1.8980 3.8658 -3.9300 16 7 3.5129 4.6038 -5.2603 17 6 4.9473 4.7058 -5.5405 18 6 2.6054 5.1747 -6.1148 19 1 1.6269 5.4557 -5.7542 20 6 2.9444 5.3917 -7.4447 21 7 4.0232 4.8342 -7.9471 22 14 1.8667 6.4756 -8.5185 23 1 0.7206 6.9799 -7.7201 24 1 2.6634 7.6240 -9.0200 25 1 1.3596 5.6850 -9.6688 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0699 1.5877 2.1491 32 1 1.9982 3.1545 1.3070 33 1 0.5489 2.1253 1.3969 34 1 3.8433 0.3261 1.6719 35 1 6.2961 0.3287 1.4711 36 1 7.3772 1.4446 -0.4381 37 1 6.0070 2.5672 -2.1469 38 1 4.7452 4.0939 -2.8286 39 1 4.6713 2.5790 -3.7601 40 1 5.2750 3.8199 -6.0846 41 1 5.1375 5.5936 -6.1433 42 1 5.4965 4.7793 -4.6018 43 1 4.2601 4.9860 -8.8754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299524793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:57 Heat of formation + Delta-G solvation = -70.760254 kcal Electronic energy + Delta-G solvation = -23339.491757 eV Core-core repulsion = 19963.267402 eV Total energy + Delta-G solvation = -3376.224356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47332 -40.29686 -38.47242 -36.92121 -36.67164 -33.78811 -32.10286 -31.11968 -30.00067 -29.20144 -27.95214 -26.18946 -25.68971 -23.68698 -22.81320 -21.13249 -20.56698 -19.21692 -18.91555 -17.71916 -17.36066 -17.20734 -16.59665 -16.37743 -15.93323 -15.57252 -15.48905 -15.31885 -14.93843 -14.60301 -14.33960 -13.96504 -13.66390 -13.51021 -13.34096 -13.19332 -13.16270 -12.97085 -12.70000 -12.69008 -12.59572 -12.44571 -12.20396 -12.12940 -11.99011 -11.63697 -11.46554 -11.27335 -11.06701 -10.44915 -9.76240 -9.72335 -9.04551 -8.40894 -6.06954 0.42830 0.54114 1.33283 1.39611 1.53186 1.84950 1.92468 2.33653 2.86004 3.01260 3.14720 3.69558 3.75925 3.89295 3.97107 4.13109 4.16531 4.17481 4.24377 4.35672 4.48683 4.55692 4.57007 4.61540 4.71797 4.76156 4.77209 4.95245 5.04461 5.09679 5.12468 5.15532 5.27111 5.29401 5.38846 5.39758 5.46814 5.53792 5.63093 5.68382 5.90347 6.03265 6.36167 6.52196 7.08450 7.32698 7.89496 8.62691 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.003814 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.622601 B = 7338.956272 C = 8401.272182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.053 4.053 4 H 0.045 0.955 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.219 4.219 11 C 0.097 3.903 12 O -0.317 6.317 13 C 0.069 3.931 14 C 0.433 3.567 15 O -0.621 6.621 16 N -0.453 5.453 17 C 0.114 3.886 18 C -0.347 4.347 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.892 5.892 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.261 1.261 25 H -0.274 1.274 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -8.023 16.562 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.072 4.072 4 H 0.064 0.936 5 C -0.192 4.192 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.173 4.173 9 C -0.104 4.104 10 C -0.238 4.238 11 C 0.052 3.948 12 O -0.230 6.230 13 C -0.009 4.009 14 C 0.222 3.778 15 O -0.508 6.508 16 N -0.173 5.173 17 C -0.029 4.029 18 C -0.475 4.475 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.530 5.530 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.186 1.186 25 H -0.200 1.200 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.896 -8.032 16.449 19.231 hybrid contribution -0.381 0.731 -1.335 1.569 sum 5.515 -7.301 15.114 17.667 Atomic orbital electron populations 1.21829 0.95360 1.02155 1.01672 1.21514 0.96208 0.94566 1.02060 1.20008 0.90585 0.97567 0.99018 0.93637 1.21820 1.01721 0.99691 0.95937 1.19481 0.96420 1.01821 0.94583 1.21092 0.93852 0.97161 0.97540 1.21422 0.94577 1.01774 0.99515 1.21278 1.00856 0.95281 0.93014 1.21505 0.91881 1.06879 1.03503 1.19411 0.90842 0.94728 0.89827 1.86133 1.35656 1.67719 1.33505 1.22329 0.93536 0.97845 0.87167 1.20512 0.89275 0.82711 0.85352 1.90504 1.19556 1.63960 1.76787 1.43740 1.07524 1.45829 1.20240 1.21575 0.79195 1.02873 0.99225 1.19645 0.98020 1.38647 0.91201 0.91217 1.26109 0.98591 0.98073 0.97232 1.70050 1.26225 1.41146 1.15626 0.84907 0.78091 0.78060 0.77456 1.19957 1.18565 1.19985 0.91223 0.94800 0.91411 0.93808 0.89565 0.90338 0.94198 0.91628 0.83080 0.82821 0.83134 0.84717 0.87984 0.88570 0.93261 0.91701 0.91233 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.67 71.98 0.70 -2.70 16 2 C -0.11 -2.51 5.14 30.60 0.16 -2.36 16 3 C -0.05 -1.52 2.52 -11.54 -0.03 -1.55 16 4 H 0.05 1.73 6.99 -2.39 -0.02 1.71 16 5 C -0.13 -3.10 8.76 71.98 0.63 -2.47 16 6 C -0.12 -3.50 4.79 -19.77 -0.09 -3.60 16 7 C -0.08 -1.65 8.76 22.25 0.19 -1.46 16 8 C -0.15 -2.84 10.04 22.28 0.22 -2.62 16 9 C -0.09 -1.77 10.04 22.25 0.22 -1.54 16 10 C -0.22 -5.86 9.04 22.37 0.20 -5.66 16 11 C 0.10 3.21 6.66 22.51 0.15 3.36 16 12 O -0.32 -13.17 8.44 -73.40 -0.62 -13.79 16 13 C 0.07 2.73 3.83 71.24 0.27 3.00 16 14 C 0.43 22.67 7.70 87.66 0.68 23.34 16 15 O -0.62 -38.50 16.21 15.99 0.26 -38.24 16 16 N -0.45 -23.96 3.01 -658.89 -1.98 -25.95 16 17 C 0.11 4.91 8.44 127.77 1.08 5.99 16 18 C -0.35 -20.17 9.24 84.04 0.78 -19.39 16 19 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 20 C 0.00 0.13 5.04 84.92 0.43 0.56 16 21 N -0.89 -46.89 10.84 21.66 0.23 -46.66 16 22 Si 0.99 42.52 29.57 68.60 2.03 44.55 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.07 1.33 6.57 -2.39 -0.02 1.32 16 27 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.55 7.57 -2.39 -0.02 1.53 16 31 H 0.08 1.37 7.39 -2.39 -0.02 1.35 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.39 6.57 -2.38 -0.02 1.38 16 34 H 0.15 2.27 7.16 -2.91 -0.02 2.25 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.14 3.27 6.30 -2.91 -0.02 3.25 16 38 H 0.10 3.36 6.93 -2.39 -0.02 3.34 16 39 H 0.10 3.36 7.63 -2.39 -0.02 3.34 16 40 H 0.05 2.15 7.83 -2.38 -0.02 2.13 16 41 H 0.06 2.95 6.80 -2.39 -0.02 2.94 16 42 H 0.07 2.32 6.61 -2.38 -0.02 2.30 16 43 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -73.44 347.86 6.50 -66.94 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.00 Total: 20.23 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.59 Total: -7.08 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.75 Total: -72.60 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.36 Total: -52.03 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.44 6.50 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.825 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds