Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47374 * 2 1 4 4 H 1.08999 * 109.47189 * 54.99639 * 3 2 1 5 5 C 1.53003 * 109.46885 * 294.99882 * 3 2 1 6 6 C 1.50697 * 109.47367 * 174.99765 * 3 2 1 7 7 C 1.38171 * 120.02439 * 59.99793 * 6 3 2 8 8 C 1.38247 * 120.05282 * 179.97438 * 7 6 3 9 9 C 1.38294 * 120.11390 * 0.04268 * 8 7 6 10 10 C 1.38127 * 120.05253 * 359.97438 * 9 8 7 11 11 C 1.38711 * 120.03035 * 239.97381 * 6 3 2 12 12 O 1.35898 * 120.05461 * 0.04802 * 11 6 3 13 13 C 1.42900 * 117.00022 * 180.02562 * 12 11 6 14 14 C 1.50700 * 109.47072 * 180.02562 * 13 12 11 15 15 O 1.21290 * 119.99911 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99921 * 359.97438 * 16 14 13 18 18 C 1.37092 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.08003 * 120.00187 * 24.38692 * 18 16 14 20 20 C 1.38949 * 119.99950 * 204.39089 * 18 16 14 21 21 N 1.31412 * 119.99979 * 12.65760 * 20 18 16 22 22 Si 1.86799 * 120.00351 * 192.65389 * 20 18 16 23 23 H 1.48509 * 109.46899 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47399 * 119.99716 * 22 20 18 25 25 H 1.48501 * 109.47476 * 240.00080 * 22 20 18 26 26 H 1.08996 * 109.47146 * 300.00224 * 1 2 3 27 27 H 1.08993 * 109.46754 * 60.00225 * 1 2 3 28 28 H 1.08996 * 109.47352 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47073 * 239.99227 * 2 1 3 30 30 H 1.09007 * 109.46680 * 119.99741 * 2 1 3 31 31 H 1.08994 * 109.47177 * 59.99866 * 5 3 2 32 32 H 1.08996 * 109.47118 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.47009 * 299.99868 * 5 3 2 34 34 H 1.08001 * 119.97516 * 359.97438 * 7 6 3 35 35 H 1.07995 * 119.94409 * 180.02562 * 8 7 6 36 36 H 1.07989 * 119.97086 * 179.70127 * 9 8 7 37 37 H 1.07996 * 120.02351 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.46810 * 299.99755 * 13 12 11 39 39 H 1.09001 * 109.47333 * 59.99309 * 13 12 11 40 40 H 1.09003 * 109.46658 * 85.87187 * 17 16 14 41 41 H 1.08994 * 109.47153 * 205.86504 * 17 16 14 42 42 H 1.08994 * 109.47521 * 325.87356 * 17 16 14 43 43 H 0.96997 * 120.00314 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3154 0.8170 -0.8339 8 6 5.6933 0.8188 -0.7212 9 6 6.3009 1.4471 0.3505 10 6 5.5321 2.0753 1.3108 11 6 4.1490 2.0760 1.1993 12 8 3.3904 2.6931 2.1429 13 6 4.0834 3.3236 3.2219 14 6 3.0857 3.9495 4.1622 15 8 1.8981 3.8644 3.9307 16 7 3.5131 4.6046 5.2597 17 6 4.9476 4.7078 5.5390 18 6 2.6055 5.1735 6.1153 19 1 1.5951 4.7949 6.1605 20 6 2.9856 6.2373 6.9244 21 7 4.1216 6.8593 6.7014 22 14 1.8819 6.7835 8.3290 23 1 0.6692 5.9272 8.3673 24 1 2.6170 6.6592 9.6133 25 1 1.4817 8.1986 8.1226 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5491 2.1251 -1.3970 32 1 1.9991 3.1539 -1.3076 33 1 2.0700 1.5874 -2.1492 34 1 3.8432 0.3250 -1.6714 35 1 6.2961 0.3283 -1.4710 36 1 7.3772 1.4430 0.4388 37 1 6.0071 2.5655 2.1477 38 1 4.6719 2.5801 3.7595 39 1 4.7451 4.0948 2.8276 40 1 5.3597 5.5671 5.0099 41 1 5.1009 4.8334 6.6107 42 1 5.4492 3.8001 5.2039 43 1 4.3871 7.6016 7.2664 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299524795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = -70.746462 kcal Electronic energy + Delta-G solvation = -23337.665622 eV Core-core repulsion = 19961.441864 eV Total energy + Delta-G solvation = -3376.223757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47306 -40.29599 -38.47213 -36.92079 -36.67138 -33.78821 -32.10099 -31.11977 -30.00124 -29.20272 -27.95241 -26.18883 -25.69101 -23.68596 -22.81233 -21.13208 -20.56647 -19.21700 -18.91555 -17.71863 -17.37944 -17.18085 -16.60971 -16.37680 -15.91675 -15.59502 -15.48783 -15.30455 -14.94377 -14.58748 -14.36581 -13.91935 -13.71259 -13.50721 -13.32338 -13.19335 -13.16201 -12.97235 -12.69980 -12.68996 -12.60403 -12.44576 -12.19766 -12.12897 -11.99303 -11.63445 -11.46545 -11.27287 -11.06685 -10.44902 -9.76232 -9.72304 -9.04545 -8.40858 -6.06896 0.42798 0.54136 1.33283 1.39607 1.53163 1.84936 1.92484 2.33663 2.86003 3.01273 3.14735 3.69528 3.75917 3.89294 3.97293 4.13220 4.15545 4.18537 4.24460 4.35692 4.48671 4.55914 4.56971 4.61376 4.71890 4.76077 4.77218 4.95267 5.04673 5.09474 5.12593 5.15568 5.27205 5.29458 5.38907 5.39775 5.46961 5.53788 5.63072 5.68380 5.90343 6.03261 6.36210 6.52210 7.08478 7.32711 7.89529 8.62733 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.003813 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.413119 B = 7341.870556 C = 8428.859705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.053 4.053 4 H 0.045 0.955 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.219 4.219 11 C 0.097 3.903 12 O -0.317 6.317 13 C 0.069 3.931 14 C 0.433 3.567 15 O -0.621 6.621 16 N -0.453 5.453 17 C 0.114 3.886 18 C -0.347 4.347 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.892 5.892 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.261 1.261 25 H -0.274 1.274 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -12.095 -14.052 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.072 4.072 4 H 0.064 0.936 5 C -0.192 4.192 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.173 4.173 9 C -0.104 4.104 10 C -0.238 4.238 11 C 0.052 3.948 12 O -0.230 6.230 13 C -0.009 4.009 14 C 0.221 3.779 15 O -0.508 6.508 16 N -0.173 5.173 17 C -0.029 4.029 18 C -0.475 4.475 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.530 5.530 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.186 1.186 25 H -0.200 1.200 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.714 -11.942 -14.038 19.296 hybrid contribution -0.376 0.881 1.241 1.568 sum 5.338 -11.061 -12.797 17.737 Atomic orbital electron populations 1.21828 0.95379 1.02167 1.01656 1.21508 0.96179 0.94463 1.02120 1.20006 0.90592 0.97631 0.98949 0.93634 1.21825 1.01724 0.99653 0.96037 1.19482 0.96419 1.01827 0.94580 1.21093 0.93853 0.97181 0.97518 1.21422 0.94576 1.01797 0.99495 1.21280 1.00850 0.95278 0.93017 1.21505 0.91881 1.06806 1.03575 1.19408 0.90846 0.94664 0.89887 1.86134 1.35643 1.67650 1.33585 1.22329 0.93514 0.97851 0.87179 1.20515 0.89383 0.85136 0.82822 1.90505 1.19563 1.65381 1.75359 1.43738 1.07638 1.46856 1.19096 1.21573 0.79307 0.99426 1.02564 1.19643 0.95102 1.15074 1.17696 0.91221 1.26107 0.98615 0.94243 1.01033 1.70045 1.23166 1.21070 1.38758 0.84909 0.78063 0.77900 0.77650 1.19962 1.18557 1.19990 0.94769 0.91328 0.91352 0.89593 0.93642 0.91616 0.94351 0.90324 0.83081 0.82824 0.83132 0.84716 0.87997 0.88552 0.93255 0.91706 0.91234 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.67 71.98 0.70 -2.65 16 2 C -0.11 -2.46 5.14 30.59 0.16 -2.30 16 3 C -0.05 -1.52 2.52 -11.54 -0.03 -1.55 16 4 H 0.05 1.73 6.99 -2.39 -0.02 1.71 16 5 C -0.14 -3.17 8.76 71.98 0.63 -2.54 16 6 C -0.12 -3.50 4.79 -19.77 -0.09 -3.60 16 7 C -0.08 -1.65 8.76 22.26 0.19 -1.46 16 8 C -0.16 -2.84 10.04 22.28 0.22 -2.62 16 9 C -0.09 -1.76 10.04 22.26 0.22 -1.54 16 10 C -0.22 -5.86 9.04 22.37 0.20 -5.66 16 11 C 0.10 3.22 6.66 22.51 0.15 3.37 16 12 O -0.32 -13.17 8.44 -73.36 -0.62 -13.79 16 13 C 0.07 2.73 3.83 71.24 0.27 3.00 16 14 C 0.43 22.66 7.70 87.66 0.68 23.34 16 15 O -0.62 -38.50 16.21 15.98 0.26 -38.24 16 16 N -0.45 -23.96 3.01 -658.90 -1.98 -25.94 16 17 C 0.11 4.91 8.44 127.77 1.08 5.99 16 18 C -0.35 -20.17 9.24 84.04 0.78 -19.39 16 19 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 20 C 0.00 0.13 5.04 84.93 0.43 0.56 16 21 N -0.89 -46.88 10.84 21.66 0.23 -46.64 16 22 Si 0.99 42.52 29.57 68.60 2.03 44.55 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.31 6.56 -2.39 -0.02 1.29 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.52 7.57 -2.39 -0.02 1.50 16 30 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.42 6.56 -2.39 -0.02 1.40 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.39 7.39 -2.39 -0.02 1.38 16 34 H 0.15 2.27 7.16 -2.91 -0.02 2.25 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.14 8.06 -2.92 -0.02 2.11 16 37 H 0.14 3.26 6.30 -2.91 -0.02 3.25 16 38 H 0.10 3.35 6.92 -2.39 -0.02 3.34 16 39 H 0.10 3.36 7.63 -2.39 -0.02 3.34 16 40 H 0.05 2.15 7.83 -2.39 -0.02 2.14 16 41 H 0.06 2.95 6.80 -2.39 -0.02 2.94 16 42 H 0.07 2.32 6.61 -2.39 -0.02 2.30 16 43 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -73.42 347.86 6.50 -66.92 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.00 Total: 20.19 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.59 Total: -7.05 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.75 Total: -72.59 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.36 Total: -52.03 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.42 6.50 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.829 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds