Wall clock time and date at job start Tue Mar 31 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46877 * 2 1 4 4 H 1.08994 * 109.47218 * 55.00321 * 3 2 1 5 5 O 1.42903 * 109.47162 * 294.99961 * 3 2 1 6 6 C 1.53006 * 109.46947 * 175.00053 * 3 2 1 7 7 C 1.52995 * 109.46832 * 184.99984 * 6 3 2 8 8 N 1.46501 * 109.46781 * 179.97438 * 7 6 3 9 9 C 1.34784 * 119.99968 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99906 * 180.02562 * 9 8 7 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 8 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.08996 * 109.47444 * 299.99917 * 1 2 3 27 27 H 1.09006 * 109.47587 * 59.99872 * 1 2 3 28 28 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46887 * 240.00503 * 2 1 3 30 30 H 1.08993 * 109.47376 * 120.00342 * 2 1 3 31 31 H 0.96698 * 114.00377 * 300.00072 * 5 3 2 32 32 H 1.09001 * 109.47059 * 64.99873 * 6 3 2 33 33 H 1.09002 * 109.47087 * 305.00334 * 6 3 2 34 34 H 1.08998 * 109.47497 * 60.00595 * 7 6 3 35 35 H 1.09002 * 109.47570 * 300.00054 * 7 6 3 36 36 H 0.96998 * 120.00101 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.47299 * 60.00523 * 11 9 8 38 38 H 1.08998 * 109.47401 * 299.99992 * 11 9 8 39 39 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 41 41 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6618 2.0815 -1.2211 6 6 3.5648 1.4444 0.1257 7 6 4.0643 2.8851 0.2511 8 7 5.5243 2.8868 0.3721 9 6 6.1890 4.0529 0.4946 10 8 5.5784 5.1007 0.5052 11 6 7.6909 4.0547 0.6185 12 6 8.1830 5.4737 0.7421 13 6 8.5976 6.1611 -0.3759 14 6 9.0570 7.4641 -0.2641 15 6 9.0981 8.0922 0.9714 16 6 8.6818 7.4267 2.1015 17 6 8.2144 6.1032 2.0001 18 6 7.7845 5.4093 3.1546 19 1 7.8772 4.3345 3.2045 20 6 7.2387 6.1152 4.2326 21 7 7.1511 5.5486 5.4085 22 14 6.6353 7.8668 3.9926 23 1 7.7479 8.8142 4.2567 24 1 6.1591 8.0393 2.5966 25 1 5.5193 8.1392 4.9336 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0140 1.6544 -2.0139 32 1 4.0029 0.9836 -0.7597 33 1 3.8570 0.8800 1.0113 34 1 3.6263 3.3458 1.1365 35 1 3.7721 3.4494 -0.6345 36 1 6.0127 2.0488 0.3633 37 1 8.1291 3.5937 -0.2667 38 1 7.9832 3.4907 1.5043 39 1 8.5694 5.6817 -1.3433 40 1 9.3850 7.9943 -1.1460 41 1 9.4575 9.1079 1.0468 42 1 8.7143 7.9180 3.0627 43 1 7.4029 4.6183 5.5186 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305817305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:02 Heat of formation + Delta-G solvation = -120.842419 kcal Electronic energy + Delta-G solvation = -22954.520359 eV Core-core repulsion = 19576.124278 eV Total energy + Delta-G solvation = -3378.396081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86229 -39.50383 -38.96758 -35.93587 -35.59713 -33.79940 -33.57375 -32.02348 -31.70623 -28.74295 -26.75386 -26.05984 -23.32605 -22.96366 -22.44946 -21.91761 -20.91423 -20.02085 -17.94949 -17.47588 -17.33559 -16.89481 -16.78507 -16.57667 -16.05728 -15.79956 -15.53600 -15.18261 -14.84580 -14.61619 -14.33025 -13.97970 -13.88991 -13.66109 -13.49986 -13.08697 -12.92765 -12.82653 -12.62331 -12.52874 -12.21388 -12.16249 -11.94722 -11.83182 -11.68216 -11.59265 -11.14770 -11.03542 -10.86113 -10.65422 -10.03402 -9.56182 -9.34127 -9.14863 -6.48359 0.81533 0.90549 1.30517 1.50922 1.72304 1.81829 2.15280 2.32967 2.70912 3.46342 3.53511 3.74354 3.91106 4.04591 4.08025 4.24181 4.26217 4.28128 4.38947 4.48361 4.54343 4.56010 4.63615 4.68956 4.75403 4.90360 4.93433 4.98213 5.01975 5.09560 5.11166 5.25427 5.33528 5.40349 5.50747 5.54121 5.62088 5.83557 5.89873 6.03031 6.18985 6.48381 6.66273 6.75025 6.88812 6.89313 7.43873 8.07338 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.003844 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.156360 B = 7282.492233 C = 8116.887294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.082 0.918 5 O -0.578 6.578 6 C -0.147 4.147 7 C 0.124 3.876 8 N -0.725 5.725 9 C 0.513 3.487 10 O -0.576 6.576 11 C -0.071 4.071 12 C -0.176 4.176 13 C -0.080 4.080 14 C -0.232 4.232 15 C -0.089 4.089 16 C -0.266 4.266 17 C 0.084 3.916 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.015 3.985 21 N -0.853 5.853 22 Si 1.097 2.903 23 H -0.256 1.256 24 H -0.280 1.280 25 H -0.287 1.287 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.388 0.612 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.055 0.945 36 H 0.414 0.586 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -13.018 -12.336 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C 0.049 3.951 4 H 0.100 0.900 5 O -0.385 6.385 6 C -0.185 4.185 7 C 0.000 4.000 8 N -0.379 5.379 9 C 0.301 3.699 10 O -0.454 6.454 11 C -0.110 4.110 12 C -0.178 4.178 13 C -0.098 4.098 14 C -0.251 4.251 15 C -0.107 4.107 16 C -0.285 4.285 17 C 0.081 3.919 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.198 4.198 21 N -0.478 5.478 22 Si 0.921 3.079 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.214 1.214 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.237 0.763 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.251 0.749 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.667 -10.672 -11.030 17.156 hybrid contribution 1.087 -2.062 -0.442 2.372 sum -6.580 -12.734 -11.472 18.359 Atomic orbital electron populations 1.21719 0.95519 1.01881 1.01763 1.22166 0.96749 0.95604 1.03954 1.21887 0.92083 0.93825 0.87323 0.90015 1.86601 1.77260 1.58174 1.16505 1.22443 0.96959 0.94078 1.05003 1.21205 0.79697 0.98746 1.00335 1.45894 1.07741 1.08683 1.75590 1.21140 0.90953 0.83373 0.74452 1.90666 1.70746 1.33702 1.50308 1.20322 0.90469 0.95887 1.04326 1.19540 1.08395 0.96926 0.92932 1.20909 0.97037 0.94865 0.97020 1.20900 1.10674 0.96341 0.97152 1.21008 0.97774 0.99047 0.92848 1.21309 1.11107 0.97816 0.98297 1.17813 0.89071 0.92085 0.92906 1.20478 1.39294 0.95491 1.01086 0.92170 1.27806 0.92221 1.08928 0.90871 1.70612 1.39329 1.14700 1.23190 0.83266 0.76908 0.71519 0.76181 1.18187 1.20598 1.21394 0.93530 0.92796 0.91740 0.89922 0.90204 0.76302 0.88402 0.89201 0.94937 0.92656 0.74916 0.86101 0.89207 0.85609 0.85306 0.85773 0.88453 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.81 71.98 0.71 -1.30 16 2 C -0.15 -1.72 5.61 30.59 0.17 -1.55 16 3 C 0.11 1.79 2.97 30.60 0.09 1.88 16 4 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 5 O -0.58 -10.78 12.41 -148.98 -1.85 -12.63 16 6 C -0.15 -2.35 5.01 30.59 0.15 -2.20 16 7 C 0.12 3.38 5.57 86.38 0.48 3.86 16 8 N -0.72 -20.80 5.56 -463.06 -2.57 -23.37 16 9 C 0.51 20.46 7.82 87.66 0.69 21.15 16 10 O -0.58 -29.56 16.03 -3.03 -0.05 -29.61 16 11 C -0.07 -2.64 5.36 29.10 0.16 -2.48 16 12 C -0.18 -8.13 4.43 -19.40 -0.09 -8.22 16 13 C -0.08 -3.31 9.66 22.22 0.21 -3.09 16 14 C -0.23 -9.37 10.05 22.46 0.23 -9.14 16 15 C -0.09 -3.88 10.02 22.22 0.22 -3.65 16 16 C -0.27 -13.48 7.26 22.73 0.16 -13.31 16 17 C 0.08 4.44 5.13 -21.29 -0.11 4.33 16 18 C -0.53 -30.07 8.80 23.46 0.21 -29.86 16 19 H 0.06 3.42 6.60 -2.91 -0.02 3.40 16 20 C 0.01 0.84 5.42 85.26 0.46 1.30 16 21 N -0.85 -49.11 13.65 21.82 0.30 -48.82 16 22 Si 1.10 55.18 24.89 68.60 1.71 56.89 16 23 H -0.26 -11.73 6.45 99.48 0.64 -11.09 16 24 H -0.28 -14.98 7.01 99.48 0.70 -14.28 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.79 7.82 -2.38 -0.02 0.77 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.39 4.11 9.05 -74.06 -0.67 3.44 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.68 7.82 -2.39 -0.02 1.66 16 36 H 0.41 8.36 8.47 -92.71 -0.79 7.58 16 37 H 0.12 3.36 8.06 -2.39 -0.02 3.34 16 38 H 0.09 3.41 6.51 -2.39 -0.02 3.39 16 39 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 41 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.10 4.95 4.43 -2.91 -0.01 4.93 16 43 H 0.28 15.55 8.73 -92.71 -0.81 14.74 16 Total: -1.00 -74.95 352.84 0.73 -74.22 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.55 Total: 25.59 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.75 Total: -42.28 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.27 Total: -72.19 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.90 Total: -42.23 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 1.71 Total: 56.89 kcal Total: -74.95 0.73 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305817305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds