Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99673 * 2 1 4 4 C 1.52991 * 109.47266 * 269.99674 * 3 2 1 5 5 C 1.53003 * 109.47245 * 184.99866 * 4 3 2 6 6 C 1.52999 * 109.47386 * 305.00460 * 4 3 2 7 7 O 1.42903 * 109.47162 * 65.00082 * 4 3 2 8 8 C 1.34773 * 120.00061 * 179.97438 * 2 1 3 9 9 O 1.21282 * 119.99503 * 179.97438 * 8 2 1 10 10 C 1.50694 * 120.00092 * 0.02562 * 8 2 1 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 2 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.08995 * 109.47181 * 269.99950 * 1 2 3 26 26 H 1.09006 * 109.47212 * 30.00135 * 1 2 3 27 27 H 1.09002 * 109.46759 * 149.99698 * 1 2 3 28 28 H 1.09005 * 109.47035 * 30.00183 * 3 2 1 29 29 H 1.08998 * 109.46561 * 149.99684 * 3 2 1 30 30 H 1.08998 * 109.46315 * 60.00573 * 5 4 3 31 31 H 1.09005 * 109.46902 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47147 * 300.00104 * 5 4 3 33 33 H 1.08996 * 109.47294 * 59.99927 * 6 4 3 34 34 H 1.08997 * 109.47557 * 179.97438 * 6 4 3 35 35 H 1.09007 * 109.46850 * 299.99917 * 6 4 3 36 36 H 0.96703 * 113.99623 * 59.99783 * 7 4 3 37 37 H 1.09001 * 109.46892 * 59.99768 * 10 8 2 38 38 H 1.08991 * 109.47294 * 299.99778 * 10 8 2 39 39 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 40 40 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 41 41 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 42 42 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 43 43 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.3237 2.9682 -1.4442 6 6 3.1708 0.5914 -2.1991 7 8 1.2060 1.9936 -2.0814 8 6 2.1389 -1.1672 0.0005 9 8 3.3517 -1.1670 0.0001 10 6 1.3855 -2.4722 0.0005 11 6 2.3648 -3.6177 0.0005 12 6 2.7397 -4.2061 -1.1860 13 6 3.6353 -5.2641 -1.1883 14 6 4.1685 -5.7373 0.0010 15 6 3.8127 -5.1603 1.1984 16 6 2.9043 -4.0855 1.2127 17 6 2.5319 -3.4842 2.4372 18 1 2.1937 -2.4587 2.4542 19 6 2.6018 -4.2177 3.6268 20 7 2.5176 -5.5230 3.5964 21 14 2.8153 -3.3334 5.2583 22 1 2.8596 -4.3292 6.3591 23 1 4.0821 -2.5589 5.2395 24 1 1.6731 -2.4090 5.4734 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0285 0.5139 29 1 3.1498 1.1385 0.5139 30 1 4.2745 2.7522 -0.9569 31 1 3.5058 3.2826 -2.4720 32 1 2.8119 3.7655 -0.9052 33 1 2.5501 -0.3046 -2.1978 34 1 3.3521 0.9058 -3.2268 35 1 4.1216 0.3754 -1.7117 36 1 0.6955 2.6950 -1.6542 37 1 0.7591 -2.5301 -0.8897 38 1 0.7585 -2.5298 0.8902 39 1 2.3311 -3.8451 -2.1182 40 1 3.9201 -5.7231 -2.1234 41 1 4.8657 -6.5620 -0.0126 42 1 4.2295 -5.5303 2.1234 43 1 2.3225 -5.9770 2.7618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305822425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -78.816556 kcal Electronic energy + Delta-G solvation = -24245.885623 eV Core-core repulsion = 20869.311920 eV Total energy + Delta-G solvation = -3376.573703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91331 -38.12173 -37.21284 -34.71244 -33.80617 -32.57338 -31.57393 -29.16972 -27.86725 -27.34845 -26.71793 -25.30397 -24.55215 -20.89962 -20.74188 -20.09218 -18.74892 -17.63318 -16.86471 -16.35987 -15.91861 -15.33430 -14.87171 -14.74806 -14.49690 -14.09709 -13.84231 -13.42298 -12.98945 -12.83606 -12.52088 -12.43193 -12.25921 -12.13879 -12.01046 -11.96519 -11.75322 -11.62929 -11.41346 -11.19514 -11.13769 -10.81082 -10.74347 -10.43146 -10.36474 -10.28162 -9.59169 -9.33608 -9.10339 -8.91597 -8.22306 -7.50556 -7.45767 -7.07962 -4.37449 2.79135 2.89277 3.17054 3.30776 3.31119 3.39166 3.42655 4.05034 4.20197 4.62631 4.74667 4.83995 4.95095 5.17616 5.30359 5.42675 5.52986 5.59749 5.70001 5.78968 5.82836 5.84492 5.86863 5.98460 6.03519 6.10653 6.13031 6.22722 6.37946 6.41008 6.50119 6.72706 6.83284 7.05064 7.25823 7.46638 7.57956 7.69953 7.83750 7.87721 7.91794 8.00291 8.25850 8.39704 8.82810 8.85749 8.97442 10.11313 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.005487 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.482734 B = 5101.336709 C = 6132.991290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.622 5.622 3 C 0.093 3.907 4 C 0.112 3.888 5 C -0.175 4.175 6 C -0.129 4.129 7 O -0.557 6.557 8 C 0.518 3.482 9 O -0.518 6.518 10 C -0.068 4.068 11 C -0.183 4.183 12 C -0.069 4.069 13 C -0.252 4.252 14 C -0.087 4.087 15 C -0.216 4.216 16 C 0.117 3.883 17 C -0.516 4.516 18 H 0.071 0.929 19 C 0.040 3.960 20 N -0.800 5.800 21 Si 1.060 2.940 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.367 0.633 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 13.504 -5.104 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.358 5.358 3 C -0.031 4.031 4 C 0.070 3.930 5 C -0.233 4.233 6 C -0.187 4.187 7 O -0.362 6.362 8 C 0.308 3.692 9 O -0.392 6.392 10 C -0.107 4.107 11 C -0.185 4.185 12 C -0.087 4.087 13 C -0.272 4.272 14 C -0.105 4.105 15 C -0.235 4.235 16 C 0.114 3.886 17 C -0.544 4.544 18 H 0.089 0.911 19 C -0.181 4.181 20 N -0.423 5.423 21 Si 0.884 3.116 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.203 1.203 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.214 0.786 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.715 12.684 -3.855 13.767 hybrid contribution -0.420 0.791 -1.329 1.603 sum -4.135 13.475 -5.184 15.018 Atomic orbital electron populations 1.21713 0.79928 1.03055 1.01101 1.47826 1.06629 1.05444 1.75902 1.22040 0.98784 0.86095 0.96163 1.21737 0.83991 0.94751 0.92506 1.22428 1.00861 0.97328 1.02691 1.21723 1.00608 0.97115 0.99215 1.86618 1.32802 1.59571 1.57195 1.21138 0.88466 0.84932 0.74702 1.90659 1.14044 1.86942 1.47576 1.20268 0.97722 0.90265 1.02489 1.19038 1.04395 1.01342 0.93725 1.20350 0.97056 0.95880 0.95448 1.20253 1.07281 1.03449 0.96189 1.20595 0.98437 0.98181 0.93297 1.21130 1.03182 1.02666 0.96544 1.17383 0.88760 0.90376 0.92094 1.20421 1.41102 1.00540 0.92379 0.91090 1.26906 0.91500 0.95277 1.04430 1.70449 1.28735 1.09600 1.33522 0.83720 0.77961 0.75834 0.74114 1.19880 1.20083 1.20304 0.93189 0.91378 0.91068 0.91059 0.89159 0.91270 0.91734 0.92490 0.91995 0.93020 0.90272 0.78623 0.90799 0.88824 0.89702 0.89513 0.89444 0.87806 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.06 59.85 0.60 1.61 16 2 N -0.62 -9.51 2.53 -181.57 -0.46 -9.97 16 3 C 0.09 1.22 4.76 -4.04 -0.02 1.20 16 4 C 0.11 1.36 1.18 -90.62 -0.11 1.25 16 5 C -0.17 -1.70 8.82 37.16 0.33 -1.38 16 6 C -0.13 -1.96 7.47 37.16 0.28 -1.68 16 7 O -0.56 -6.31 11.80 -35.23 -0.42 -6.73 16 8 C 0.52 10.24 5.59 -10.99 -0.06 10.18 16 9 O -0.52 -12.16 13.79 5.56 0.08 -12.08 16 10 C -0.07 -1.37 3.73 -29.03 -0.11 -1.48 16 11 C -0.18 -4.45 4.43 -103.91 -0.46 -4.92 16 12 C -0.07 -1.61 9.66 -39.66 -0.38 -1.99 16 13 C -0.25 -5.90 10.05 -39.29 -0.39 -6.30 16 14 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 15 C -0.22 -5.75 7.95 -38.87 -0.31 -6.05 16 16 C 0.12 3.13 5.30 -106.82 -0.57 2.56 16 17 C -0.52 -13.71 8.08 -37.74 -0.30 -14.02 16 18 H 0.07 1.87 6.73 -52.49 -0.35 1.51 16 19 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 20 N -0.80 -21.35 12.31 55.55 0.68 -20.67 16 21 Si 1.06 22.13 30.00 -169.99 -5.10 17.03 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.64 7.11 -51.93 -0.37 0.27 16 27 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 28 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.09 6.24 -51.93 -0.32 0.76 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.31 7.44 -51.92 -0.39 0.92 16 36 H 0.37 2.63 9.04 45.56 0.41 3.04 16 37 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 38 H 0.09 1.89 7.02 -51.93 -0.36 1.53 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 42 H 0.10 2.84 6.49 -52.49 -0.34 2.50 16 43 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -31.42 344.69 -7.71 -39.13 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.70 Total: 10.66 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.99 Total: -22.57 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.22 Total: -30.63 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.34 Total: -18.81 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.42 -7.71 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305822425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.689 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds