Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47036 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47193 * 300.00389 * 14 13 12 16 16 C 1.53002 * 109.46647 * 60.00387 * 14 13 12 17 17 C 1.50696 * 109.47133 * 180.02562 * 14 13 12 18 18 H 1.07995 * 120.00360 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99935 * 180.02562 * 17 14 13 20 20 N 1.31523 * 120.00122 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47463 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47002 * 120.00176 * 21 19 17 24 24 H 1.48506 * 109.47341 * 239.99974 * 21 19 17 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 33 33 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 34 34 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 35 35 H 1.08995 * 109.47471 * 300.00256 * 13 12 10 36 36 H 1.09004 * 109.47342 * 60.00763 * 13 12 10 37 37 H 1.09003 * 109.46973 * 59.99848 * 15 14 13 38 38 H 1.09006 * 109.46918 * 179.97438 * 15 14 13 39 39 H 1.08994 * 109.47324 * 299.99734 * 15 14 13 40 40 H 1.08997 * 109.47512 * 60.00428 * 16 14 13 41 41 H 1.09006 * 109.47126 * 179.97438 * 16 14 13 42 42 H 1.09001 * 109.47045 * 299.99549 * 16 14 13 43 43 H 0.97001 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.1307 -3.3461 -3.0356 15 6 7.5048 -3.0579 -2.4274 16 6 5.4207 -4.4183 -2.2066 17 6 6.3008 -3.8353 -4.4507 18 1 5.8571 -3.2872 -5.2686 19 6 7.0228 -4.9829 -4.7013 20 7 7.5627 -5.6508 -3.7052 21 14 7.2342 -5.5890 -6.4555 22 1 6.5357 -4.6661 -7.3857 23 1 8.6796 -5.6315 -6.7937 24 1 6.6561 -6.9510 -6.5817 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0010 29 1 1.3339 4.5114 0.0026 30 1 3.7920 4.6381 -0.0024 31 1 5.1344 2.5754 -0.0023 32 1 5.2326 0.2265 0.4336 33 1 3.7469 -0.7414 0.5899 34 1 5.5282 -2.0811 -0.9257 35 1 4.3154 -2.2697 -3.4693 36 1 5.8005 -1.3012 -3.6265 37 1 7.3821 -2.7038 -1.4039 38 1 8.1005 -3.9708 -2.4268 39 1 8.0106 -2.2941 -3.0180 40 1 4.4418 -4.6236 -2.6398 41 1 6.0163 -5.3312 -2.2066 42 1 5.2981 -4.0641 -1.1830 43 1 8.0710 -6.4579 -3.8816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316085673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -59.799516 kcal Electronic energy + Delta-G solvation = -23267.476470 eV Core-core repulsion = 19891.727408 eV Total energy + Delta-G solvation = -3375.749062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39280 -38.94193 -37.38630 -36.26665 -33.18093 -32.83343 -30.81362 -30.15559 -28.07970 -27.13497 -25.68994 -25.46076 -24.57653 -22.17692 -21.81827 -19.92067 -18.73910 -18.03130 -16.81882 -16.36817 -15.86457 -15.79380 -15.58680 -14.87586 -14.74434 -14.54133 -14.41091 -13.75155 -13.30872 -13.09663 -12.90520 -12.81791 -12.45796 -12.14302 -12.07290 -11.93499 -11.40617 -11.24940 -11.17048 -11.16539 -10.88088 -10.83985 -10.63653 -10.34727 -10.17825 -9.59607 -9.48686 -9.23944 -8.84122 -8.73106 -8.40621 -8.22569 -8.13979 -5.99832 -4.09573 1.28499 1.44235 3.21124 3.25132 3.28555 3.37044 3.41942 3.62978 4.06502 4.43067 4.65467 4.75284 4.91650 4.99762 5.05800 5.21406 5.26888 5.27651 5.38488 5.45435 5.50941 5.56687 5.71316 6.00248 6.26835 6.31079 6.37646 6.39890 6.50153 6.55704 6.75242 6.84553 6.86714 6.98762 7.06156 7.12969 7.36109 7.40193 7.59272 7.72274 8.04445 8.13411 8.23246 8.42222 8.84005 8.92416 9.56122 11.01566 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.003255 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.684382 B = 8600.310136 C = 8849.631944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.143 3.857 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.089 4.089 9 C -0.097 4.097 10 C 0.509 3.491 11 O -0.546 6.546 12 N -0.719 5.719 13 C 0.133 3.867 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.007 0.993 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.007 0.993 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 13.081 12.036 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.097 3.903 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.177 4.177 7 C -0.089 4.089 8 C -0.090 4.090 9 C -0.137 4.137 10 C 0.295 3.705 11 O -0.424 6.424 12 N -0.370 5.370 13 C 0.011 3.989 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.232 0.768 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.026 0.974 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.902 13.138 11.378 20.003 hybrid contribution 0.036 -0.472 -0.666 0.817 sum -9.865 12.666 10.712 19.300 Atomic orbital electron populations 1.23036 0.78606 1.03942 1.01047 1.86098 1.21157 1.26785 1.88341 1.18787 0.91716 0.84269 0.95499 1.21154 0.99795 0.92400 1.09554 1.20872 0.94694 0.96762 0.97999 1.20973 0.93901 0.98206 1.04588 1.20860 0.99862 0.91034 0.97137 1.18687 0.90271 0.94818 1.05270 1.20519 1.00915 0.96132 0.96149 1.20368 0.78644 0.81011 0.90525 1.90664 1.48562 1.56913 1.46280 1.46287 1.53528 1.26051 1.11168 1.21666 0.99897 0.97327 0.80019 1.18361 0.91146 0.89000 0.96040 1.21822 0.99982 1.01845 0.95136 1.21821 0.99416 1.02666 0.94883 1.21042 1.32777 1.08988 0.91475 0.92434 1.24884 0.95296 0.96402 0.96984 1.69821 1.35101 1.17467 1.30122 0.86525 0.77768 0.78640 0.85013 1.19772 1.21076 1.21078 0.92889 0.92693 0.88265 0.85683 0.86087 0.86021 0.85472 0.88376 0.87995 0.76825 0.92943 0.92929 0.97450 0.89649 0.95496 0.95516 0.89646 0.97429 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.33 9.63 -19.42 -0.19 -4.51 16 3 C 0.14 2.01 6.66 -39.22 -0.26 1.75 16 4 C -0.21 -2.50 9.04 -39.43 -0.36 -2.85 16 5 C -0.09 -0.92 10.04 -39.60 -0.40 -1.32 16 6 C -0.16 -1.77 10.04 -39.56 -0.40 -2.17 16 7 C -0.07 -0.89 9.68 -39.61 -0.38 -1.27 16 8 C -0.09 -1.27 4.39 -104.48 -0.46 -1.73 16 9 C -0.10 -1.33 5.55 -29.04 -0.16 -1.50 16 10 C 0.51 9.25 7.82 -10.98 -0.09 9.17 16 11 O -0.55 -12.08 16.03 5.56 0.09 -11.99 16 12 N -0.72 -13.23 4.96 -60.30 -0.30 -13.53 16 13 C 0.13 2.93 4.50 -4.04 -0.02 2.91 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 17 C -0.50 -13.42 8.01 -34.44 -0.28 -13.69 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.81 9.35 55.43 0.52 -23.29 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 33 H 0.10 1.29 7.69 -51.93 -0.40 0.89 16 34 H 0.40 6.52 6.16 -40.82 -0.25 6.27 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -31.20 348.52 -7.48 -38.69 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.46 Total: 5.39 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.37 Total: -11.90 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.22 Total: -36.82 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.10 Total: -16.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.20 -7.48 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316085673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.112 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds