Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47036 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47193 * 300.00389 * 14 13 12 16 16 C 1.53002 * 109.46647 * 60.00387 * 14 13 12 17 17 C 1.50696 * 109.47133 * 180.02562 * 14 13 12 18 18 H 1.07995 * 120.00360 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99935 * 180.02562 * 17 14 13 20 20 N 1.31523 * 120.00122 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47463 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47002 * 120.00176 * 21 19 17 24 24 H 1.48506 * 109.47341 * 239.99974 * 21 19 17 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 33 33 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 34 34 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 35 35 H 1.08995 * 109.47471 * 300.00256 * 13 12 10 36 36 H 1.09004 * 109.47342 * 60.00763 * 13 12 10 37 37 H 1.09003 * 109.46973 * 59.99848 * 15 14 13 38 38 H 1.09006 * 109.46918 * 179.97438 * 15 14 13 39 39 H 1.08994 * 109.47324 * 299.99734 * 15 14 13 40 40 H 1.08997 * 109.47512 * 60.00428 * 16 14 13 41 41 H 1.09006 * 109.47126 * 179.97438 * 16 14 13 42 42 H 1.09001 * 109.47045 * 299.99549 * 16 14 13 43 43 H 0.97001 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.1307 -3.3461 -3.0356 15 6 7.5048 -3.0579 -2.4274 16 6 5.4207 -4.4183 -2.2066 17 6 6.3008 -3.8353 -4.4507 18 1 5.8571 -3.2872 -5.2686 19 6 7.0228 -4.9829 -4.7013 20 7 7.5627 -5.6508 -3.7052 21 14 7.2342 -5.5890 -6.4555 22 1 6.5357 -4.6661 -7.3857 23 1 8.6796 -5.6315 -6.7937 24 1 6.6561 -6.9510 -6.5817 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0010 29 1 1.3339 4.5114 0.0026 30 1 3.7920 4.6381 -0.0024 31 1 5.1344 2.5754 -0.0023 32 1 5.2326 0.2265 0.4336 33 1 3.7469 -0.7414 0.5899 34 1 5.5282 -2.0811 -0.9257 35 1 4.3154 -2.2697 -3.4693 36 1 5.8005 -1.3012 -3.6265 37 1 7.3821 -2.7038 -1.4039 38 1 8.1005 -3.9708 -2.4268 39 1 8.0106 -2.2941 -3.0180 40 1 4.4418 -4.6236 -2.6398 41 1 6.0163 -5.3312 -2.2066 42 1 5.2981 -4.0641 -1.1830 43 1 8.0710 -6.4579 -3.8816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316085673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -78.271070 kcal Electronic energy + Delta-G solvation = -23268.277457 eV Core-core repulsion = 19891.727408 eV Total energy + Delta-G solvation = -3376.550049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39344 -40.34800 -38.35755 -37.97824 -34.94453 -33.89004 -32.64400 -31.01953 -29.14586 -28.02330 -27.55390 -27.37075 -26.27630 -23.04918 -22.87083 -21.32608 -20.58016 -18.94675 -18.32957 -17.62122 -17.31042 -16.97156 -16.62359 -16.45076 -16.17791 -16.03523 -15.30458 -14.91104 -14.83017 -14.64434 -14.38177 -14.04305 -13.91814 -13.37651 -13.25497 -13.08945 -12.97051 -12.84568 -12.66128 -12.57462 -12.26189 -12.19673 -12.13904 -11.98148 -11.72562 -11.47804 -11.25814 -10.85530 -10.67279 -10.39889 -9.88944 -9.76528 -9.05495 -8.02477 -6.18232 0.38522 0.54877 1.40772 1.44741 1.54428 1.79012 2.36508 2.42738 2.51452 2.94709 3.20810 3.72471 3.90826 4.06363 4.17356 4.27677 4.37487 4.37910 4.45123 4.50628 4.52095 4.58399 4.68004 4.70618 4.72961 4.84911 5.00266 5.07134 5.11086 5.15191 5.20491 5.39241 5.41408 5.51939 5.62408 5.63807 5.67248 5.68051 5.91963 6.15870 6.22375 6.44070 6.48862 6.75024 6.86089 7.41273 7.49459 8.96560 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.003255 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.684382 B = 8600.310136 C = 8849.631944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.219 4.219 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.083 4.083 8 C -0.120 4.120 9 C -0.085 4.085 10 C 0.508 3.492 11 O -0.589 6.589 12 N -0.713 5.713 13 C 0.150 3.850 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.042 0.958 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.281 1.281 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.409 0.591 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.015 0.985 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 14.204 13.359 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.074 3.926 4 C -0.237 4.237 5 C -0.104 4.104 6 C -0.182 4.182 7 C -0.101 4.101 8 C -0.121 4.121 9 C -0.125 4.125 10 C 0.296 3.704 11 O -0.469 6.469 12 N -0.364 5.364 13 C 0.026 3.974 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.568 4.568 18 H 0.060 0.940 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.246 0.754 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.233 14.254 12.734 21.680 hybrid contribution 0.080 -0.764 -1.072 1.319 sum -10.153 13.489 11.662 20.520 Atomic orbital electron populations 1.23275 0.76839 1.05164 1.02058 1.86041 1.23188 1.27279 1.88571 1.19110 0.92196 0.84978 0.96331 1.21478 1.00912 0.92232 1.09124 1.21301 0.95031 0.97534 0.96550 1.21355 0.94291 0.98914 1.03656 1.21163 1.00866 0.91077 0.96968 1.18927 0.90751 0.95419 1.07019 1.20498 1.02819 0.96439 0.92730 1.21183 0.77100 0.79985 0.92102 1.90640 1.50082 1.58056 1.48160 1.46126 1.53897 1.26507 1.09915 1.21203 0.98127 0.96184 0.81866 1.18359 0.92008 0.89715 0.94868 1.21661 0.98772 1.00500 0.96832 1.21664 0.98149 1.01484 0.96470 1.21308 1.33227 1.09481 0.92767 0.93992 1.25452 0.95139 0.96532 1.00026 1.69917 1.35076 1.17517 1.31242 0.85705 0.77696 0.78026 0.81367 1.20145 1.20582 1.20639 0.90796 0.92681 0.87057 0.83757 0.83151 0.83529 0.84112 0.85282 0.86854 0.75392 0.95040 0.94665 0.94212 0.91871 0.96344 0.96572 0.91812 0.94334 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -9.19 9.63 -92.39 -0.89 -10.08 16 3 C 0.12 3.25 6.66 22.51 0.15 3.40 16 4 C -0.22 -4.84 9.04 22.37 0.20 -4.64 16 5 C -0.09 -1.66 10.04 22.26 0.22 -1.44 16 6 C -0.16 -3.29 10.04 22.28 0.22 -3.07 16 7 C -0.08 -1.94 9.68 22.25 0.22 -1.73 16 8 C -0.12 -3.28 4.39 -19.77 -0.09 -3.36 16 9 C -0.09 -2.21 5.55 29.10 0.16 -2.05 16 10 C 0.51 18.14 7.82 87.65 0.69 18.82 16 11 O -0.59 -26.28 16.03 -3.02 -0.05 -26.33 16 12 N -0.71 -25.56 4.96 -463.07 -2.30 -27.85 16 13 C 0.15 6.67 4.50 86.38 0.39 7.06 16 14 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 16 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 17 C -0.53 -28.62 8.01 25.60 0.21 -28.42 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 19 C 0.03 1.51 5.15 84.65 0.44 1.94 16 20 N -0.90 -48.32 9.35 21.45 0.20 -48.12 16 21 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 26 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.14 2.45 6.30 -2.91 -0.02 2.43 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.13 2.47 8.05 -2.38 -0.02 2.45 16 33 H 0.11 2.66 7.69 -2.38 -0.02 2.64 16 34 H 0.41 12.55 6.16 -92.71 -0.57 11.98 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 38 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 42 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 43 H 0.26 13.42 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -68.08 348.52 4.48 -63.60 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.43 Total: 22.83 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 5.05 Total: -19.24 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.10 Total: -75.97 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.94 Total: -36.41 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.08 4.48 -63.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316085673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.667 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds