Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00166 * 2 1 4 4 C 1.38756 * 120.05130 * 359.71887 * 3 2 1 5 5 C 1.38121 * 119.93794 * 179.70211 * 4 3 2 6 6 C 1.38287 * 120.06200 * 0.60151 * 5 4 3 7 7 C 1.38250 * 120.10785 * 359.67369 * 6 5 4 8 8 C 1.50697 * 119.97337 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47380 * 269.98259 * 8 7 6 10 10 O 1.21284 * 119.99384 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47031 * 299.99807 * 13 12 11 15 15 C 1.52998 * 109.47254 * 59.99887 * 13 12 11 16 16 C 1.50702 * 109.47284 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99951 * 1.34285 * 16 13 12 18 18 C 1.37872 * 120.00137 * 181.34580 * 16 13 12 19 19 N 1.31519 * 120.00067 * 193.97591 * 18 16 13 20 20 Si 1.86804 * 120.00037 * 13.97474 * 18 16 13 21 21 H 1.48501 * 109.46847 * 84.54719 * 20 18 16 22 22 H 1.48500 * 109.46900 * 204.54634 * 20 18 16 23 23 H 1.48498 * 109.46938 * 324.54942 * 20 18 16 24 24 C 1.38168 * 120.05183 * 0.02768 * 7 6 5 25 25 H 1.08997 * 109.46817 * 60.00718 * 1 2 3 26 26 H 1.08998 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47393 * 300.00108 * 1 2 3 28 28 H 1.07999 * 120.02736 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.96858 * 180.29900 * 5 4 3 30 30 H 1.07991 * 119.94813 * 179.70247 * 6 5 4 31 31 H 1.08996 * 109.46941 * 29.98374 * 8 7 6 32 32 H 1.08999 * 109.47009 * 149.98409 * 8 7 6 33 33 H 0.97004 * 119.99789 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46703 * 299.99486 * 12 11 9 35 35 H 1.08994 * 109.47154 * 59.99586 * 12 11 9 36 36 H 1.09002 * 109.47066 * 69.36641 * 14 13 12 37 37 H 1.09002 * 109.47242 * 189.36949 * 14 13 12 38 38 H 1.09004 * 109.47099 * 309.36543 * 14 13 12 39 39 H 1.08994 * 109.47523 * 60.00006 * 15 13 12 40 40 H 1.09006 * 109.47314 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.47046 * 299.99695 * 15 13 12 42 42 H 0.96999 * 119.99798 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.02270 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0059 5 6 1.9209 3.6047 0.0003 6 6 3.3019 3.6758 -0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0001 9 6 6.0626 2.6247 -1.4207 10 8 5.2756 2.5815 -2.3426 11 7 7.3858 2.6953 -1.6669 12 6 7.8735 2.7217 -3.0481 13 6 9.4013 2.8026 -3.0480 14 6 9.8445 4.0768 -2.3262 15 6 9.9766 1.5818 -2.3271 16 6 9.9031 2.8290 -4.4687 17 1 9.2014 2.8138 -5.2896 18 6 11.2579 2.8727 -4.7207 19 7 11.6935 3.1706 -5.9253 20 14 12.4749 2.5086 -3.3510 21 1 12.6764 1.0411 -3.2451 22 1 13.7717 3.1658 -3.6535 23 1 11.9438 3.0293 -2.0657 24 6 3.4311 1.2848 0.0000 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2128 2.3203 -0.0109 29 1 1.3340 4.5113 0.0006 30 1 3.7922 4.6380 -0.0001 31 1 5.8757 3.5066 0.5136 32 1 5.9714 1.7292 0.5142 33 1 8.0151 2.7295 -0.9295 34 1 7.5581 1.8136 -3.5620 35 1 7.4632 3.5911 -3.5617 36 1 9.6286 3.9852 -1.2617 37 1 10.9155 4.2213 -2.4687 38 1 9.3051 4.9317 -2.7341 39 1 9.6609 0.6741 -2.8412 40 1 11.0652 1.6397 -2.3266 41 1 9.6138 1.5623 -1.2994 42 1 12.6467 3.2009 -6.1026 43 1 4.0207 0.3799 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316135127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -40.912047 kcal Electronic energy + Delta-G solvation = -22848.421440 eV Core-core repulsion = 19473.491399 eV Total energy + Delta-G solvation = -3374.930040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36447 -39.36033 -37.62988 -36.61037 -33.30039 -32.65918 -31.46493 -30.61372 -28.11155 -27.34885 -26.39924 -25.59483 -24.71690 -22.66968 -21.60574 -20.05847 -19.17222 -17.88823 -16.89935 -16.45077 -16.11732 -16.07527 -15.89074 -15.24641 -15.14675 -14.98653 -14.16815 -13.86449 -13.53426 -13.31556 -13.23181 -12.92914 -12.69353 -12.50964 -12.23594 -12.19564 -12.05968 -11.94337 -11.64479 -11.24006 -11.21900 -10.95522 -10.43932 -10.31497 -10.17596 -10.07205 -9.58622 -9.13906 -8.87646 -8.68686 -8.53251 -8.43741 -8.27776 -6.15081 -4.12393 1.20910 1.39013 2.98192 3.08929 3.23461 3.30391 3.38181 3.49821 3.90387 4.35028 4.56186 4.64846 4.86299 4.89905 4.91945 5.07732 5.15547 5.18206 5.20635 5.27464 5.34805 5.48290 5.60390 5.77904 5.93261 6.04463 6.06237 6.18193 6.32451 6.34930 6.47496 6.50867 6.52340 6.61956 6.64988 6.69318 6.79435 6.96837 7.21864 7.26515 7.42636 7.71901 7.94594 8.44511 8.62602 8.90585 9.48763 10.98095 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034672 B = 0.002903 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.374988 B = 9642.468042 C = 9761.974419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.020 4.020 8 C -0.107 4.107 9 C 0.507 3.493 10 O -0.538 6.538 11 N -0.724 5.724 12 C 0.142 3.858 13 C 0.028 3.972 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.513 4.513 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.891 5.891 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.249 1.249 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.396 0.604 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.265 0.735 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.697 -1.761 17.182 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.021 4.021 8 C -0.147 4.147 9 C 0.292 3.708 10 O -0.415 6.415 11 N -0.375 5.375 12 C 0.020 3.980 13 C 0.027 3.973 14 C -0.200 4.200 15 C -0.205 4.205 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.175 1.175 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.231 0.769 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.023 -1.956 16.352 24.414 hybrid contribution 0.883 -0.108 0.868 1.243 sum -17.139 -2.063 17.220 24.383 Atomic orbital electron populations 1.23027 0.78594 1.03789 1.01256 1.86069 1.21221 1.27069 1.88882 1.18926 0.92201 0.84084 0.96774 1.21174 0.99773 0.92480 1.09546 1.20856 0.94481 0.96905 0.97634 1.20905 0.93788 0.97911 1.03338 1.19067 0.93902 0.92503 0.96618 1.20734 0.92633 1.05274 0.96018 1.20345 0.82765 0.77089 0.90622 1.90721 1.55300 1.49348 1.46156 1.46309 1.06430 1.74138 1.10637 1.21495 0.95200 1.01467 0.79832 1.18717 0.90251 0.91463 0.96844 1.22298 1.01802 0.99256 0.96599 1.22363 0.99820 1.00403 0.97883 1.20728 0.92683 1.51993 0.89722 0.90566 1.24979 0.98290 0.94100 0.95389 1.69955 1.14735 1.46712 1.21404 0.87290 0.79471 0.78016 0.83388 1.21355 1.23422 1.17494 1.20218 0.91371 0.98098 1.05816 0.92663 0.88361 0.92800 0.85736 0.85840 0.85948 0.87841 0.87946 0.76929 0.92052 0.91954 0.95901 0.92536 0.93413 0.92788 0.94055 0.95137 0.92554 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.74 10.50 -19.43 -0.20 -3.95 16 3 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.66 16 5 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 6 C -0.14 -1.68 9.70 -39.56 -0.38 -2.06 16 7 C -0.02 -0.26 4.37 -104.64 -0.46 -0.71 16 8 C -0.11 -1.20 5.83 -29.04 -0.17 -1.37 16 9 C 0.51 8.06 7.82 -10.99 -0.09 7.97 16 10 O -0.54 -10.94 16.03 5.55 0.09 -10.85 16 11 N -0.72 -11.53 5.00 -60.30 -0.30 -11.83 16 12 C 0.14 2.85 4.49 -4.04 -0.02 2.83 16 13 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 14 C -0.14 -2.85 7.53 37.16 0.28 -2.57 16 15 C -0.15 -2.96 7.52 37.16 0.28 -2.68 16 16 C -0.51 -13.80 8.62 -34.44 -0.30 -14.10 16 17 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 19 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 20 Si 0.89 21.01 22.79 -169.99 -3.87 17.13 16 21 H -0.29 -6.77 7.10 56.52 0.40 -6.36 16 22 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.25 -5.33 4.65 56.52 0.26 -5.07 16 24 C -0.14 -1.79 9.64 -39.43 -0.38 -2.17 16 25 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.40 5.32 6.26 -40.82 -0.26 5.06 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 37 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 38 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 41 H 0.03 0.50 6.86 -51.92 -0.36 0.14 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -33.14 339.81 -6.19 -39.33 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.36 Total: 4.74 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.43 Total: -13.77 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.47 Total: -37.75 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.11 Total: -14.80 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -3.87 Total: 17.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.14 -6.19 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316135127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.586 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds