Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00166 * 2 1 4 4 C 1.38756 * 120.05130 * 359.71887 * 3 2 1 5 5 C 1.38121 * 119.93794 * 179.70211 * 4 3 2 6 6 C 1.38287 * 120.06200 * 0.60151 * 5 4 3 7 7 C 1.38250 * 120.10785 * 359.67369 * 6 5 4 8 8 C 1.50697 * 119.97337 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47380 * 269.98259 * 8 7 6 10 10 O 1.21284 * 119.99384 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47031 * 299.99807 * 13 12 11 15 15 C 1.52998 * 109.47254 * 59.99887 * 13 12 11 16 16 C 1.50702 * 109.47284 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99951 * 1.34285 * 16 13 12 18 18 C 1.37872 * 120.00137 * 181.34580 * 16 13 12 19 19 N 1.31519 * 120.00067 * 193.97591 * 18 16 13 20 20 Si 1.86804 * 120.00037 * 13.97474 * 18 16 13 21 21 H 1.48501 * 109.46847 * 84.54719 * 20 18 16 22 22 H 1.48500 * 109.46900 * 204.54634 * 20 18 16 23 23 H 1.48498 * 109.46938 * 324.54942 * 20 18 16 24 24 C 1.38168 * 120.05183 * 0.02768 * 7 6 5 25 25 H 1.08997 * 109.46817 * 60.00718 * 1 2 3 26 26 H 1.08998 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47393 * 300.00108 * 1 2 3 28 28 H 1.07999 * 120.02736 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.96858 * 180.29900 * 5 4 3 30 30 H 1.07991 * 119.94813 * 179.70247 * 6 5 4 31 31 H 1.08996 * 109.46941 * 29.98374 * 8 7 6 32 32 H 1.08999 * 109.47009 * 149.98409 * 8 7 6 33 33 H 0.97004 * 119.99789 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46703 * 299.99486 * 12 11 9 35 35 H 1.08994 * 109.47154 * 59.99586 * 12 11 9 36 36 H 1.09002 * 109.47066 * 69.36641 * 14 13 12 37 37 H 1.09002 * 109.47242 * 189.36949 * 14 13 12 38 38 H 1.09004 * 109.47099 * 309.36543 * 14 13 12 39 39 H 1.08994 * 109.47523 * 60.00006 * 15 13 12 40 40 H 1.09006 * 109.47314 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.47046 * 299.99695 * 15 13 12 42 42 H 0.96999 * 119.99798 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.02270 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0059 5 6 1.9209 3.6047 0.0003 6 6 3.3019 3.6758 -0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0001 9 6 6.0626 2.6247 -1.4207 10 8 5.2756 2.5815 -2.3426 11 7 7.3858 2.6953 -1.6669 12 6 7.8735 2.7217 -3.0481 13 6 9.4013 2.8026 -3.0480 14 6 9.8445 4.0768 -2.3262 15 6 9.9766 1.5818 -2.3271 16 6 9.9031 2.8290 -4.4687 17 1 9.2014 2.8138 -5.2896 18 6 11.2579 2.8727 -4.7207 19 7 11.6935 3.1706 -5.9253 20 14 12.4749 2.5086 -3.3510 21 1 12.6764 1.0411 -3.2451 22 1 13.7717 3.1658 -3.6535 23 1 11.9438 3.0293 -2.0657 24 6 3.4311 1.2848 0.0000 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2128 2.3203 -0.0109 29 1 1.3340 4.5113 0.0006 30 1 3.7922 4.6380 -0.0001 31 1 5.8757 3.5066 0.5136 32 1 5.9714 1.7292 0.5142 33 1 8.0151 2.7295 -0.9295 34 1 7.5581 1.8136 -3.5620 35 1 7.4632 3.5911 -3.5617 36 1 9.6286 3.9852 -1.2617 37 1 10.9155 4.2213 -2.4687 38 1 9.3051 4.9317 -2.7341 39 1 9.6609 0.6741 -2.8412 40 1 11.0652 1.6397 -2.3266 41 1 9.6138 1.5623 -1.2994 42 1 12.6467 3.2009 -6.1026 43 1 4.0207 0.3799 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316135127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -64.290038 kcal Electronic energy + Delta-G solvation = -22849.435185 eV Core-core repulsion = 19473.491399 eV Total energy + Delta-G solvation = -3375.943786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28857 -40.56639 -38.70355 -38.05176 -34.95676 -33.73089 -33.22874 -31.43345 -29.13894 -28.08296 -27.98266 -27.22424 -26.51197 -23.52309 -22.60413 -21.27327 -20.89755 -18.78198 -18.31851 -17.90153 -17.27863 -16.96110 -16.93029 -16.61302 -16.56912 -16.28445 -15.20147 -15.02300 -14.86523 -14.75863 -14.45381 -14.26534 -14.18287 -13.94198 -13.73618 -13.40242 -13.09130 -12.84076 -12.67651 -12.44922 -12.38486 -12.13328 -11.96156 -11.93932 -11.74679 -11.73293 -11.09190 -10.87247 -10.61114 -10.37771 -9.95496 -9.76867 -9.12748 -8.29991 -6.31957 0.34045 0.52364 1.37302 1.38831 1.52070 1.75229 2.29692 2.35490 2.43438 2.90060 3.06434 3.69371 3.89552 4.03691 4.13198 4.18181 4.26126 4.33271 4.38217 4.38778 4.43168 4.43822 4.55718 4.66903 4.72421 4.77962 4.82015 4.85886 4.89274 4.96715 5.08399 5.10241 5.20737 5.34462 5.46274 5.49017 5.57639 5.64391 5.73929 5.81866 5.84051 6.30887 6.47776 6.69557 6.74726 7.32962 7.39559 8.87508 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034672 B = 0.002903 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.374988 B = 9642.468042 C = 9761.974419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.108 3.892 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.036 4.036 8 C -0.095 4.095 9 C 0.506 3.494 10 O -0.589 6.589 11 N -0.711 5.711 12 C 0.158 3.842 13 C 0.028 3.972 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.520 4.520 17 H 0.024 0.976 18 C 0.014 3.986 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.282 1.282 22 H -0.316 1.316 23 H -0.199 1.199 24 C -0.161 4.161 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.414 0.586 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.264 0.736 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.213 -1.554 21.359 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.063 3.937 4 C -0.233 4.233 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.037 4.037 8 C -0.134 4.134 9 C 0.294 3.706 10 O -0.469 6.469 11 N -0.364 5.364 12 C 0.034 3.966 13 C 0.027 3.973 14 C -0.198 4.198 15 C -0.205 4.205 16 C -0.558 4.558 17 H 0.042 0.958 18 C -0.183 4.183 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.210 1.210 22 H -0.246 1.246 23 H -0.123 1.123 24 C -0.180 4.180 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.252 0.748 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.561 -1.751 20.591 27.777 hybrid contribution 0.844 -0.182 -0.549 1.023 sum -17.716 -1.933 20.042 26.819 Atomic orbital electron populations 1.23321 0.76519 1.05463 1.02200 1.86036 1.23487 1.27068 1.88886 1.19173 0.92462 0.84941 0.97085 1.21492 1.01043 0.92053 1.08687 1.21244 0.94571 0.97910 0.96590 1.21222 0.94506 0.98333 1.03308 1.19286 0.94798 0.92559 0.97018 1.20766 0.91759 1.08277 0.92567 1.21194 0.81940 0.75220 0.92221 1.90709 1.56477 1.51388 1.48311 1.46041 1.07133 1.74105 1.09095 1.20973 0.94326 0.99208 0.82105 1.18650 0.90973 0.93728 0.93977 1.22221 1.00760 0.97584 0.99269 1.22303 0.99234 0.98630 1.00283 1.21071 0.92071 1.50974 0.91707 0.95785 1.25909 1.00495 0.93813 0.98058 1.70125 1.15100 1.49158 1.24399 0.86309 0.76013 0.77922 0.82197 1.20968 1.24566 1.12290 1.20426 0.92091 0.98462 1.07009 0.92209 0.86482 0.91259 0.83407 0.83265 0.84572 0.84384 0.85124 0.74810 0.94496 0.94457 0.91046 0.93665 0.94150 0.93735 0.94666 0.90313 0.92685 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.77 10.50 -92.44 -0.97 -8.74 16 3 C 0.11 2.64 6.69 22.51 0.15 2.79 16 4 C -0.21 -4.32 9.04 22.37 0.20 -4.12 16 5 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 6 C -0.16 -3.37 9.70 22.28 0.22 -3.16 16 7 C -0.04 -0.85 4.37 -19.88 -0.09 -0.93 16 8 C -0.09 -1.81 5.83 29.10 0.17 -1.64 16 9 C 0.51 15.11 7.82 87.66 0.69 15.80 16 10 O -0.59 -23.95 16.03 -3.04 -0.05 -23.99 16 11 N -0.71 -20.72 5.00 -463.07 -2.32 -23.03 16 12 C 0.16 6.31 4.49 86.38 0.39 6.70 16 13 C 0.03 1.17 0.50 -52.93 -0.03 1.14 16 14 C -0.14 -5.19 7.53 71.98 0.54 -4.65 16 15 C -0.15 -5.41 7.52 71.98 0.54 -4.87 16 16 C -0.52 -28.93 8.62 25.60 0.22 -28.71 16 17 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 18 C 0.01 0.82 5.32 84.65 0.45 1.27 16 19 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 20 Si 0.95 42.50 22.79 68.60 1.56 44.06 16 21 H -0.28 -12.46 7.10 99.48 0.71 -11.75 16 22 H -0.32 -14.68 7.11 99.48 0.71 -13.97 16 23 H -0.20 -7.40 4.65 99.48 0.46 -6.94 16 24 C -0.16 -4.13 9.64 22.36 0.22 -3.91 16 25 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 28 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 29 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.14 2.45 8.06 -2.92 -0.02 2.43 16 31 H 0.14 1.72 8.08 -2.39 -0.02 1.70 16 32 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.41 8.99 6.26 -92.71 -0.58 8.41 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 37 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 38 H 0.04 1.52 8.12 -2.38 -0.02 1.50 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.34 2.25 -2.38 -0.01 1.34 16 41 H 0.08 2.12 6.86 -2.38 -0.02 2.11 16 42 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -77.83 339.81 3.72 -74.10 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.19 Total: 21.01 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.00 Total: -24.36 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.02 Total: -82.08 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.02 Total: -32.73 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.56 Total: 44.06 kcal Total: -77.83 3.72 -74.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316135127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.814 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds