Wall clock time and date at job start Tue Mar 31 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47444 * 2 1 4 4 H 1.09001 * 109.46520 * 305.53687 * 3 2 1 5 5 C 1.50702 * 109.46927 * 185.54120 * 3 2 1 6 6 O 1.21289 * 119.99885 * 263.91752 * 5 3 2 7 7 N 1.34773 * 120.00153 * 83.92309 * 5 3 2 8 8 C 1.37097 * 120.00035 * 355.29457 * 7 5 3 9 9 H 1.08005 * 119.99737 * 38.12334 * 8 7 5 10 10 C 1.38951 * 120.00214 * 217.84266 * 8 7 5 11 11 N 1.31404 * 120.00012 * 21.08072 * 10 8 7 12 12 Si 1.86799 * 120.00088 * 201.07966 * 10 8 7 13 13 H 1.48507 * 109.47287 * 90.00016 * 12 10 8 14 14 H 1.48500 * 109.47384 * 209.99965 * 12 10 8 15 15 H 1.48497 * 109.47396 * 330.00048 * 12 10 8 16 16 C 1.46498 * 120.00267 * 175.30254 * 7 5 3 17 17 C 1.53006 * 109.46831 * 269.64835 * 16 7 5 18 18 O 1.42901 * 109.47346 * 64.99657 * 17 16 7 19 19 C 1.42900 * 114.00118 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47177 * 65.53819 * 3 2 1 21 21 C 1.38235 * 119.99665 * 59.72761 * 20 3 2 22 22 C 1.38232 * 119.99710 * 179.78588 * 21 20 3 23 23 C 1.38237 * 120.00043 * 0.44671 * 22 21 20 24 24 C 1.38235 * 120.00156 * 359.80453 * 23 22 21 25 25 C 1.38229 * 119.99820 * 240.00124 * 20 3 2 26 26 H 1.08994 * 109.47883 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46632 * 300.00394 * 1 2 3 28 28 H 1.09004 * 109.47160 * 59.99632 * 1 2 3 29 29 H 1.09000 * 109.47029 * 240.00058 * 2 1 3 30 30 H 1.09004 * 109.47160 * 120.00368 * 2 1 3 31 31 H 0.97004 * 120.00475 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47172 * 29.64328 * 16 7 5 33 33 H 1.09000 * 109.47833 * 149.64503 * 16 7 5 34 34 H 1.09002 * 109.47041 * 184.99669 * 17 16 7 35 35 H 1.09002 * 109.47030 * 304.99675 * 17 16 7 36 36 H 1.08995 * 109.46955 * 59.99995 * 19 18 17 37 37 H 1.08997 * 109.46990 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47019 * 300.00299 * 19 18 17 39 39 H 1.08004 * 120.00361 * 359.97438 * 21 20 3 40 40 H 1.07996 * 120.00407 * 180.27091 * 22 21 20 41 41 H 1.08002 * 120.00040 * 179.83180 * 23 22 21 42 42 H 1.07992 * 120.00585 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.00325 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 3.5408 1.4446 -0.1372 6 8 4.2400 1.5230 0.8508 7 7 4.1061 1.3594 -1.3577 8 6 3.3202 1.1738 -2.4656 9 1 2.3631 1.6691 -2.5379 10 6 3.7576 0.3532 -3.4982 11 7 4.6821 -0.5524 -3.2710 12 14 3.0312 0.5375 -5.2093 13 1 3.8318 1.5197 -5.9838 14 1 3.0551 -0.7761 -5.9013 15 1 1.6293 1.0156 -5.1031 16 6 5.5602 1.4648 -1.5005 17 6 5.9468 2.9298 -1.7138 18 8 5.6263 3.6825 -0.5421 19 6 5.9488 5.0714 -0.6373 20 6 1.6529 2.1123 1.2933 21 6 2.0943 1.5970 2.4976 22 6 1.7428 2.2139 3.6837 23 6 0.9422 3.3407 3.6659 24 6 0.4965 3.8529 2.4618 25 6 0.8516 3.2385 1.2755 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.9878 -1.1251 -3.9918 32 1 6.0422 1.0897 -0.5976 33 1 5.8850 0.8749 -2.3576 34 1 7.0171 2.9986 -1.9083 35 1 5.3963 3.3306 -2.5650 36 1 5.3980 5.5163 -1.4659 37 1 5.6756 5.5722 0.2915 38 1 7.0190 5.1849 -0.8098 39 1 2.7164 0.7142 2.5118 40 1 2.0913 1.8139 4.6244 41 1 0.6654 3.8211 4.5927 42 1 -0.1286 4.7334 2.4478 43 1 0.5034 3.6387 0.3347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316572531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:31 Heat of formation + Delta-G solvation = -58.480843 kcal Electronic energy + Delta-G solvation = -24519.225323 eV Core-core repulsion = 21143.533443 eV Total energy + Delta-G solvation = -3375.691880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.50465 -38.07287 -36.87824 -34.73605 -34.18671 -31.57572 -30.43403 -30.07813 -29.32556 -26.57475 -25.64651 -24.73346 -22.40587 -22.10518 -21.68420 -20.09837 -18.90475 -17.02369 -16.29823 -15.95626 -15.58663 -15.28673 -14.82854 -14.51540 -14.37335 -14.25709 -13.93236 -13.68858 -13.43051 -12.94427 -12.69358 -12.48160 -12.08110 -11.94239 -11.78019 -11.51110 -11.37983 -11.20407 -11.07629 -10.95350 -10.86217 -10.66799 -10.47332 -10.34182 -10.22555 -10.06532 -9.89619 -9.11127 -8.98059 -8.49695 -8.24996 -8.01609 -7.42964 -6.37070 -4.05943 1.86451 1.93645 3.09898 3.20462 3.21558 4.01051 4.10749 4.31390 4.55656 4.82205 4.98398 5.31246 5.35536 5.43102 5.60414 5.66560 5.72987 5.74259 5.77074 5.88526 5.98589 6.01019 6.06485 6.08964 6.15619 6.21354 6.31238 6.37201 6.48176 6.49634 6.59750 6.60890 6.78773 6.88784 6.92166 6.96457 7.06756 7.21640 7.30492 7.45171 7.53585 7.89547 8.00873 8.40377 9.11335 9.60172 10.06185 10.65049 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.006638 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.021171 B = 4217.346034 C = 5380.143375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.053 4.053 4 H 0.090 0.910 5 C 0.493 3.507 6 O -0.581 6.581 7 N -0.441 5.441 8 C -0.334 4.334 9 H 0.087 0.913 10 C 0.043 3.957 11 N -0.862 5.862 12 Si 0.908 3.092 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.118 3.882 17 C 0.049 3.951 18 O -0.369 6.369 19 C 0.033 3.967 20 C -0.048 4.048 21 C -0.075 4.075 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.119 4.119 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 5.365 4.236 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.075 4.075 4 H 0.108 0.892 5 C 0.281 3.719 6 O -0.465 6.465 7 N -0.161 5.161 8 C -0.462 4.462 9 H 0.105 0.895 10 C -0.162 4.162 11 N -0.499 5.499 12 Si 0.735 3.265 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.193 1.193 16 C -0.006 4.006 17 C -0.029 4.029 18 O -0.287 6.287 19 C -0.064 4.064 20 C -0.049 4.049 21 C -0.093 4.093 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.389 5.153 4.762 8.275 hybrid contribution -0.087 0.401 -1.391 1.450 sum -4.476 5.553 3.371 7.889 Atomic orbital electron populations 1.21755 0.96289 1.00858 1.01371 1.21349 0.94989 0.94564 1.03177 1.20110 0.95312 0.97354 0.94681 0.89182 1.20047 0.88887 0.79495 0.83481 1.90532 1.63883 1.54501 1.37544 1.43198 1.04768 1.63280 1.04812 1.19373 1.03536 1.27218 0.96032 0.89519 1.25306 0.97166 0.93653 1.00120 1.69912 1.30231 1.16996 1.32738 0.86231 0.79706 0.77724 0.82866 1.20422 1.20983 1.19334 1.21428 0.83572 0.91773 1.03857 1.23129 0.97245 0.94784 0.87737 1.88150 1.84542 1.18028 1.37995 1.22612 0.98166 0.84433 1.01229 1.19664 0.95630 0.94788 0.94768 1.21044 0.96796 1.00042 0.91467 1.21075 0.99092 0.96650 0.97961 1.20972 0.99594 0.97201 0.97418 1.20943 1.01282 0.99984 0.92699 1.21015 0.98966 0.95864 0.97847 0.93249 0.93205 0.92850 0.89593 0.92473 0.92102 0.91803 0.86691 0.94458 0.93513 0.94989 0.90629 0.95177 0.85827 0.86843 0.87064 0.86922 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.73 37.16 0.36 -1.90 16 2 C -0.10 -1.94 5.22 -26.73 -0.14 -2.08 16 3 C -0.05 -1.09 1.67 -92.92 -0.16 -1.24 16 4 H 0.09 1.83 6.29 -51.93 -0.33 1.50 16 5 C 0.49 11.97 6.31 -10.99 -0.07 11.90 16 6 O -0.58 -15.38 13.64 4.76 0.06 -15.32 16 7 N -0.44 -10.90 2.50 -114.81 -0.29 -11.19 16 8 C -0.33 -8.13 7.91 -14.93 -0.12 -8.25 16 9 H 0.09 2.05 6.49 -52.48 -0.34 1.71 16 10 C 0.04 1.04 4.96 -17.47 -0.09 0.95 16 11 N -0.86 -21.92 11.46 55.50 0.64 -21.28 16 12 Si 0.91 18.86 29.60 -169.99 -5.03 13.82 16 13 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 C 0.12 2.80 5.48 -4.04 -0.02 2.78 16 17 C 0.05 1.02 6.28 37.16 0.23 1.25 16 18 O -0.37 -8.05 9.73 -36.02 -0.35 -8.41 16 19 C 0.03 0.54 11.01 101.05 1.11 1.66 16 20 C -0.05 -0.91 3.64 -104.63 -0.38 -1.29 16 21 C -0.08 -1.41 7.82 -39.58 -0.31 -1.72 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -2.00 9.67 -39.58 -0.38 -2.39 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.75 7.40 -51.92 -0.38 0.37 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.81 7.43 -51.93 -0.39 1.42 16 30 H 0.06 1.08 7.19 -51.93 -0.37 0.71 16 31 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.06 1.61 7.35 -51.93 -0.38 1.22 16 33 H 0.12 2.83 5.53 -51.93 -0.29 2.54 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 2.46 6.89 -52.48 -0.36 2.10 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.77 7.95 -52.49 -0.42 1.35 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -28.86 350.09 -7.46 -36.32 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.62 Total: 8.31 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.15 Total: -7.54 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.35 Total: -32.47 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.29 Total: -23.72 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.86 -7.46 -36.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316572531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.157 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds